Commit 8c2e62e9 authored by Zhang, Yuanpeng's avatar Zhang, Yuanpeng ⭐
Browse files

updated to trials of calib

parent 18dfc157

.gitignore

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@@ -2,3 +2,4 @@ 
.cache/*

utils/finddata/__pycache__/*

.token

.notes
 
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.vscode/settings.json

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{

    "files.exclude": {

        "**/.git": true,

        "**/.svn": true,

        "**/.hg": true,

        "**/.DS_Store": true,

        "**/Thumbs.db": true,

        "**/.classpath": true,

        "**/.project": true,

        "**/.settings": true,

        "**/.factorypath": true

    }

}
 
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cal_config.json

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{

    "Diamond": "/SNS/NOM/IPTS-31346/nexus/NOM_235407.nxs.h5",

    "Diamond": "/SNS/NOM/IPTS-36186/nexus/NOM_237357.nxs.h5",

    "Instrument": "NOM",

    "Date": "2026-03-17",

    "SampleEnv": "furnace",

    "Date": "2026-03-30",

    "SampleEnv": "shifter",

    "OutputDir": "/SNS/NOM/shared/autoreduce/calibration",

    "GenShadowMask": "shadow_mask_furnace_235407.in",

    "DiaLattParam": 3.5671299351,

    "GenShadowMask": "shadow_mask_furnace_237357.in",

    "DiaLattParam": 3.567129935100,

    "GroupMethod": "KMEANS_ED",

    "SaveInitCalTable": true,

    "Quiet": true,

nom_cal

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#!/bin/bash



MAX_ATTEMPTS=5



run_calibration() {

    set -e



    working_dir="/SNS/NOM/shared/CALIBRATION/"

    cd $working_dir
@@ -53,46 +58,17 @@ if [ -d "tmp" ]; then 
        rm -rf tmp

    fi



# cp autogrouping_config_template.json autogrouping_config.json

# sed -i "s%TO_REPLACE_CALIBRANT%${dia_file}%" autogrouping_config.json

# sed -i "s%TO_REPLACE_GM%${group_method}%" autogrouping_config.json

# sed -i "s%TO_REPLACE_MF%mask_combined_cache.in%" autogrouping_config.json



# # Grouping

# # In case the `dev` environment is not working properly,

# # one can roll back to the `prod` version by switching

# # the commented line below.

# conda activate mantidtotalscattering-dev

# # conda activate mantidtotalscattering

# 

# echo "[Info] Grouping..."

# python autogrouping.py

# 

# conda deactivate

# 

# if [ "$group_method" = "KMEANS_ED" ]; then

# 	sed -i '3d' outputgrouping.xml

# 	sed -i '4d' outputgrouping.xml

# 	ex -s -c 3m4 -c w -c q outputgrouping.xml

# fi



    # External call to translate the mask file in plain text form to

    # its XML form.

#. /opt/anaconda/etc/profile.d/conda.sh

# conda activate ~y8z/miniconda/envs/nom_calib

    echo "[Info] Converting shadow mask file..."

    ~y8z/miniconda/envs/nom_calib/bin/python group_calib_prep.py

    echo "[Info] Done with shadow mask converting."

# conda deactivate



    cd $working_dir



    # Calibration

    echo "[Info] calibrating..."

    mantidpython $working_dir/utils/nom_cal.py $working_dir

# mantidpythonnightly $working_dir/utils/nom_cal.py $working_dir

# ~y8z/miniconda/envs/mantid-developer-v6.13.1.2/bin/python /SNS/users/y8z/pd_utils/mantid_v6p13p1p2/build/bin/AddPythonPath.py

# ~y8z/miniconda/envs/mantid-developer-v6.13.1.2/bin/python $working_dir/utils/nom_cal_local.py $working_dir $local_cc_file

    echo "[Info] Done with calibrating."



    if [ ! -d $out_dir/input_configs ] ; then
@@ -112,3 +88,20 @@ echo "Info> Calibration job done!" 
    echo "Info> h5 file written to $out_dir"

    echo "+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+-+"

    echo ""

}



for attempt in $(seq 1 $MAX_ATTEMPTS); do

    echo "[Info] Attempt $attempt of $MAX_ATTEMPTS..."

    if run_calibration; then

        exit 0

    else

        echo "[Warning] Attempt $attempt failed."

        if [ $attempt -lt $MAX_ATTEMPTS ]; then

            echo "[Info] Retrying..."

        fi

    fi

done



echo "[Error] Calibration failed after $MAX_ATTEMPTS attempts."

mantidpython $working_dir/utils/cal_fail_slack.py $working_dir/cal_config.json

exit 1

utils/cal_fail_slack.py

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import sys

sys.path.append("/SNS/users/y8z/miniconda/envs/slack/lib/python3.13/site-packages")

from slack_sdk import WebClient



slack_msg = "Calibration failed after 5 trials.\n"

slack_msg += f"Check the calibration configuration file at "

slack_msg += f"at, `{sys.argv[1]}`.\n"

sltk = "xoxb-970229573620-6616766768435-KI4xnOfT7roQo9fUpLSSAVjn"

client = WebClient(token=sltk)

client.chat_postMessage(channel="nomad-monitor", text=slack_msg)