Reorganize class file and glossary stuff

% XXX temporary: show page margins

%\usepackage{showframe}

%\renewcommand\makeostipage\relax

%\renewcommand\makecoverpage\relax

%\renewcommand\maketitlepage\relax

\usepackage{threeparttable}

%\usepackage{enumitem}

% Acronym support (ac, acl)

\usepackage[shortcuts]{glossaries}

\setacronymstyle{long-short}

% Use inline small italic blue for comments

\definecolor{note}{RGB}{50,100,200}

\renewcommand{\marginpar}[1]{\small\em\color{note}[#1]}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% AUTHORSHIP & PUBLISHING

\newacronym{nrc}{NRC}{Nuclear Regulatory Commission}

\newacronym{tm}{TM}{Technical memo}

\newacronym{ornl}{ORNL}{Oak Ridge National Laboratory}

\newacronym{tnr}{TNR}{Times New Roman}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% FRONT MATTER

\listoftables

% LIST OF ACRONYMS

% NOTE: this will only print if `makeindex X.ist -o X.gls X.glo` is executed.

% This is part of the included makefile

\printglossary

% This is part of the included Makefile.

\printacronyms

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% ADDITIONAL FRONT MATTER (OPTIONAL)

list may include any or all of the following sections and should begin on an

odd-numbered page in the order listed below:

\noindent{FOREWORD {\color{blue}{\emph {[Note: Spelling is not ``FORWARD.'']}}}}\\

\noindent{PREFACE}\\

\noindent{ACKNOWLEDGMENTS}\\

\noindent{EXECUTIVE SUMMARY OR SUMMARY}\\

\noindent{ABSTRACT}

\begin{itemize}

  \item FOREWORD \marginpar{Note: spelling is not ``FORWARD.''}

  \item PREFACE

  \item ACKNOWLEDGMENTS

  \item EXECUTIVE SUMMARY OR SUMMARY

  \item ABSTRACT

\end{itemize}

Each section of the front material begins on an odd-numbered page. The

abstract, if very brief, may begin on page 1 inserted above the introduction

section.

\bigskip

\phantomsection

\addcontentsline{toc}{section}{GENERAL INFORMATION}

\begin{center}

  {\textbf{GENERAL INFORMATION}}

\end{center}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% ADDITIONAL FRONT MATTER (OPTIONAL)

\section*{General Information}

Document margins are 1 in. all around.

If symbols, they will appear the following order: \footnote{First},

\footnote{Second}, \footnote{Third}, \footnote{Fourth}, \footnote{Fifth},

\footnote{etc}. Symbols \emph{are not} used as table footnote indicators (see

Section~\ref{Table Placement}).

Section~\ref{sec:tables}).

% Returns footnotes back to Arabic numbers.

\renewcommand*{\thefootnote}{\arabic{footnote}}

bibliographic citations.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% \section*{Acknowledgment}

% Add acknowledgment if applicable.

\section*{Acknowledgment}

Add acknowledgment if applicable.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% ABSTRACT

\label{sec:firstsec}

Begin text here. You can reference acronyms such as \ac{ornl}, and when

referencing the next time they will automatically be shortened (such as

\ac{ornl}).

referencing the next time they will automatically be replaced with shortened

versions such as \ac{ornl}.

The body of the document is paginated consecutively (i.e., 1, 2, 3) or by

section (i.e., 1-1, 2-1, 3-1) using Arabic numbers centered at the bottom of

each page. Blank backup pages are not numbered.

When typing your document in LaTeX, it might be useful to break the line at the

right-hand side by hitting the return key

so that any version control system you might be using can recognize changes with

better granularity. These version control

systems (e.g., SVN, Git, Mercurial) track changes by line number, so the more

frequent line breaks that a document has,

the better control over changes and merges the author(s) will have. These breaks

are treated as spaces in the final output.

right-hand side by hitting the return key so that any version control system you

might be using can recognize changes with better granularity. These version

control systems (e.g., SVN, Git, Mercurial) track changes by line number, so the

more frequent line breaks that a document has, the better control over changes

and merges the author(s) will have. These breaks are treated as spaces in the

final output.

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\subsection{Second-Order Heading}

\subsection{Figures}

Insert figures after the text callout but as close to the call out as possible.

(They always have a caption describing them and they

are always numbered. LaTeX automatically floats Tables and Figures, depending on

how much space is left on the page at

the point that they are processed. If there is not enough room on the current

page, the float is moved to the top of the next

page.) Figures are numbered consecutively (i.e., Figure 1, Figure 2) except in

large reports, where they may be numbered consecutively by section (i.e., Figure

1.1, Figure 1.2).

(They always have a caption describing them and they are always numbered. LaTeX

automatically floats Tables and Figures, depending on how much space is left on

the page at the point that they are processed. If there is not enough room on

the current page, the float is moved to the top of the next page.) Figures are

numbered consecutively (i.e., Figure 1, Figure 2) except in large reports, where

they may be numbered consecutively by section (i.e., Figure 1.1, Figure 1.2).

All figures are pulled in from source files that should be placed in a directory

to which the author can link in the LaTeX file.

In this template, the image files for the figures are in the same directory as

the main LaTeX document, but it is common practice

to also place them in a sub folder named "figures" or similar.

to which the author can link in the LaTeX file.  In this template, the image

files for the figures are in the same directory as the main LaTeX document, but

it is common practice to also place them in a sub folder named "figures" or

similar.

\begin{figure}[ht]

	\begin{center}

	\includegraphics[width=5.5in, height=2.5in]{figures/fig1.png}

	\vspace{-.1in}

  \flushleft\caption[All figure captions are 10 pt, bold, Times New Roman.]{All

    figure captions are 10 pt, bold, Times New Roman. \textmd{If you have a

  \flushleft\caption[All figure captions are 10 pt, bold, \ac{tnr}.]{All

    figure captions are 10 pt, bold, \ac{tnr}. \textmd{If you have a

    two-line or more figure caption it is flush left. Only the first sentence of

  a figure caption is bolded.}}

	\end{center}

\subsection{Tables}

As with figures, tables are numbered consecutively, or consecutively by section,

and should follow their call out (see

Table \ref{tab:1}) in the text as closely as possible. (LaTeX automatically

floats Tables and Figures, depending on how much

space is left on the page at the point that they are processed. If there is not

enough room on the current page, the float is moved

to the top of the next page.) Tables are formatted using small TNR. To

accommodate large tables, the font size can be decreased

and, if necessary, landscaped.

and should follow their call out (see Table \ref{tab:1}) in the text as closely

as possible. (LaTeX automatically floats Tables and Figures, depending on how

much space is left on the page at the point that they are processed. If there is

not enough room on the current page, the float is moved to the top of the next

page.) Tables are formatted using small TNR. To accommodate large tables, the

font size can be decreased and, if necessary, landscaped.

\begin{table}[ht]

  \centering

\NeedsTeXFormat{LaTeX2e}[1995/12/01]

\ProvidesClass{ornltm}[2016/09/16 ORNL Technical Memorandum class]

%%%%%%%%%%% TYPE AND GEOMETRY %%%%%%%%%%%

\LoadClass[11pt,letterpaper,twoside]{article}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% GEOMETRY

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\LoadClass[11pt,letterpaper,twoside]{article}

\RequirePackage[margin=1in,footskip=.75in]{geometry}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% FONTS

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% ams math must be loaded before txfonts

\usepackage{amsmath}

\RequirePackage{amsmath}

% Use Times for math font and text font.

\RequirePackage[T1]{fontenc}

\RequirePackage{txfonts}

% bold math must be loaded after Times font

% Bold math must be loaded after Times font

\RequirePackage{bm}

% Macro for bold sans-serif

% Bold sans-serif

\newcommand{\textbsf}[1]{{\bfseries\sffamily #1}}

% Macro for bold italics

% Bold italics

\newcommand{\textbi}[1]{{\bfseries\itshape #1}}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\RequirePackage[pdfusetitle]{hyperref} % url and links in PDF

\RequirePackage{emptypage} % create a blank page with no numbers

\RequirePackage{tocloft} % table of contents styling

% Footer for cover page

\fancypagestyle{coverpage}

{

  \renewcommand{\headrulewidth}{0pt}

  \fancyhf{}

  \fancyfoot[L]{\includegraphics[width=3.72in]{textlogo.png}}

}

\RequirePackage[shortcuts]{glossaries} % acronyms

% Set footrule width for pages w/footnotes.

% THIS DOESN'T WORK.

\renewcommand{\footrulewidth}{0.4pt}

% \renewcommand{\footrulewidth}{0.4pt}

% ORNL official green color

\definecolor{ornlgreen}{RGB}{0,121,52}

% Add pretty link colors

\hypersetup{

	colorlinks,

  linkcolor=[rgb]{0.082,0.274,0.407},

  linkcolor=[rgb]{0.01,0.05,0.1},

	citecolor=[rgb]{0.780,0.647,0.258},

	urlcolor=[rgb]{0.325,0.494,0.658}

}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% TITLE STYLES 

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Show five levels of depth in title labels

\setcounter{secnumdepth}{5} 

\titleformat{\paragraph}{\bf}{\thetitle}{1ex}{}[]

\titleformat{\subparagraph}{\bf\itshape}{\relax}{0pt}{}[]

%% TABLE OF CONTENTS, FIGURES, TABLES %%

% Make the contents, figure, and table titles uppercase

\renewcommand\cfttoctitlefont{\bfseries\MakeUppercase}

\renewcommand\cftloftitlefont{\bfseries\MakeUppercase}

\renewcommand\cftlottitlefont{\bfseries\MakeUppercase}

% Squish section lines together

\setlength{\cftbeforesecskip}{0pt}

% Add leaders to all sections and subsections in the TOC.

\renewcommand\cftsecleader{\cftdotfill{\cftdotsep}}

% Clear the page before TOC if it is in the ``front matter''

\AtBeginDocument{%

\let\@origcfttoc\tableofcontents

\renewcommand{\tableofcontents}{%

\@cleariffrontmatter

\@origcfttoc%

}

}

% Contents/figures should have plain numbering if in the front matter

\renewcommand\@cfttocstart{%

  \if@mainmatter%

    \relax%

  \else%

    \pagestyle{plain}%

  \fi%

}

\renewcommand\@cfttocfinish{%

  \if@mainmatter%

    \relax%

  \else%

    \clearpage%

  \fi%

}

% Add section titles for figures/tables

\renewcommand\cftlofprehook{%

\phantomsection\addcontentsline{toc}{section}{List of Figures}%

}

\renewcommand\cftlotprehook{%

\phantomsection\addcontentsline{toc}{section}{List of Tables}%

}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% VARIABLES

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% COVER

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Footer for cover page

\fancypagestyle{coverpage}

{

  \renewcommand\headrulewidth{0pt}

  \fancyhf{}

  \fancyfoot[L]{\includegraphics[width=3.72in]{textlogo.png}}

}

\def\makecoverpage{%

\begin{titlepage}

\thispagestyle{coverpage}

\newif\if@mainmatter

\@mainmattertrue

\def\@cleariffrontmatter{\if@mainmatter\relax\else{\cleardoublepage}\fi}

\def\@cleariffrontmatter{\if@mainmatter\relax\else{\clearpage}\fi}

\def\@cleardbliffrontmatter{\if@mainmatter\relax\else{\cleardoublepage}\fi}

\newcommand{\frontmatter}{%

  \@mainmatterfalse%

  \section*{Abstract}%

}{}

% Add page break after every section by default. (TODO: not fully working)

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% TABLE OF CONTENTS, FIGURES, TABLE STYLES

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% Make the contents, figure, and table titles uppercase

\renewcommand\cfttoctitlefont{\bfseries\MakeUppercase}

\renewcommand\cftloftitlefont{\bfseries\MakeUppercase}

\renewcommand\cftlottitlefont{\bfseries\MakeUppercase}

% Squish section lines together

\setlength{\cftbeforesecskip}{0pt}

% Add leaders to all sections and subsections in the TOC.

\renewcommand\cftsecleader{\cftdotfill{\cftdotsep}}

% Clear the page before TOC if it is in the ``front matter''

\AtBeginDocument{%

\let\@origcfttoc\tableofcontents

\renewcommand\tableofcontents{%

\@cleardbliffrontmatter

\@origcfttoc%

}%

}

% Lists should have plain numbering if in the front matter

\renewcommand\@cfttocstart{%

  \if@mainmatter%

    \relax%

  \else%

    \pagestyle{plain}%

  \fi%

}

% Lists should clear the page after if in front matter

\renewcommand\@cfttocfinish{\@cleariffrontmatter}

% Add section titles for figures/tables

\renewcommand\cftlofprehook{%

\phantomsection\addcontentsline{toc}{section}{List of Figures}%

}

\renewcommand\cftlotprehook{%

\phantomsection\addcontentsline{toc}{section}{List of Tables}%

}

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% ACRONYMS

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

\setacronymstyle{long-short}

\providecommand*{\printacronyms}[1][]{%

\printglossary[type=\acronymtype,#1]}%

%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%

% MAIN MATTER

  %\titlespacing*{\section}{}{\stretch{1}}{\stretch{1}}%

	\gdef\thesection{\@Alph\c@section}%

	\pagenumbering{arabic}%

  \renewcommand{\thepage}{\thesection-\arabic{page}}%

  \renewcommand\thepage{\thesection-\arabic{page}}%

  % Reset equations

  \gdef\theequation{\@Alph\c@section.\arabic{equation}}%

  \@addtoreset{equation}{section}%