Update IntegratePeaksMD_ellipsoid_test.py PlotPeakByLofValue_test.py...

Update IntegratePeaksMD_ellipsoid_test.py PlotPeakByLofValue_test.py WANDPowderReduction_group_test.py calgoniotest.py centroidmd_leanelasticpeak.py compare_LeakElasticPeaks_test.py ellipsoid_shapes.py ellipsoid_shell.py ellipsoid_shell3.py etest.py etest_fake.py etest_fake2.py etest_fake3.py event_test.py findleanelasticpeakstest.py goniometer_test.py goniometer_test_long.py indexpeakstest.py leanpeaksworkpsacetest.py multig.py peak_ellipsoid_integrate_test.py peaks_test.py peaksworkspacesaveload.py predictpeakstest.py quick_peak_test.py

IntegratePeaksMD_ellipsoid_test.py

+# import mantid algorithms, numpy and matplotlib
+from mantid.simpleapi import *
+import matplotlib.pyplot as plt
+import numpy as np
+
+ws = CreateMDWorkspace(Dimensions='3', Extents='0.5,1.5,0.5,1.5,0.5,1.5',
+                       Names='Q_lab_x,Q_lab_y,Q_lab_z', Units='U,U,U',
+                       Frames='QLab,QLab,QLab',
+                       SplitInto='2', SplitThreshold='50')
+expt_info = CreateSampleWorkspace()
+ws.addExperimentInfo(expt_info)
+nevents=10000000
+FakeMDEventData(ws, UniformParams=f'{nevents},0.98,1.02,0.98,1.02,0.98,1.02')
+# add peak
+p = CreatePeaksWorkspace(InstrumentWorkspace='ws', NumberOfPeaks=0, OutputWorkspace='peaks')
+SetUB('peaks', 1,1,1,90,90,90)
+pk = p.createPeak([1,1,1]) # axes aligned with viewing axes
+p.addPeak(pk)
+a = 0.005
+b = 0.013
+c = 0.013
+#a=b=c=0.005
+p=IntegratePeaksMD(InputWorkspace='ws', PeakRadius=[a,b,c], Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='ellipsoid')
+print("Integrate Intensity =", p.getPeak(0).getIntensity())
+print("Approx. Expected Intensity=", 4/3*np.pi*(a*b*c)*nevents*25**3)

PlotPeakByLofValue_test.py

+from mantid.simpleapi import *
+import numpy as np
+
+ws = CreateSampleWorkspace()
+
+#create string of workspaces to fit (ws,i0; ws,i1, ws,i2 ...)
+workspaces = [ws.name() + ',i%d' % i for i in range(ws.getNumberHistograms())]
+workspaces = ';'.join(workspaces)
+
+
+function = "name=Gaussian,Height=10.0041,PeakCentre=10098.6,Sigma=48.8581"
+peaks = PlotPeakByLogValue(workspaces, function, Spectrum=1)
+
+function = "name=Gaussian,Height=10.0041,PeakCentre=10098.6,Sigma=48.8581;name=FlatBackground,A0=0.3"
+peaks = PlotPeakByLogValue(workspaces, function, Spectrum=1)

WANDPowderReduction_group_test.py

+# import mantid algorithms, numpy and matplotlib
+from mantid.simpleapi import *
+import matplotlib.pyplot as plt
+import numpy as np
+
+from mantid.simpleapi import (
+    WANDPowderReduction,
+    CreateSampleWorkspace,CloneWorkspace, GroupWorkspaces
+)
+from mantid.api import WorkspaceGroup
+import numpy as np
+
+
+event_data = CreateSampleWorkspace(
+    NumBanks=1,
+    BinWidth=20000,
+    PixelSpacing=0.1,
+    BankPixelWidth=100,
+    WorkspaceType="Event",
+)
+event_cal = CreateSampleWorkspace(
+    NumBanks=1,
+    BinWidth=20000,
+    PixelSpacing=0.1,
+    BankPixelWidth=100,
+    WorkspaceType="Event",
+    Function="Flat background",
+)
+event_bkg = CreateSampleWorkspace(
+    NumBanks=1,
+    BinWidth=20000,
+    PixelSpacing=0.1,
+    BankPixelWidth=100,
+    WorkspaceType="Event",
+    Function="Flat background",
+)
+
+pd_out = WANDPowderReduction(
+    InputWorkspace=[event_data, event_data],
+    CalibrationWorkspace=event_cal,
+    BackgroundWorkspace=event_bkg,
+    Target="Theta",
+    NumberBins=1000,
+    NormaliseBy="None",
+    Sum=True,
+)
+
+pd_out2 = WANDPowderReduction(
+    InputWorkspace=[event_data, event_data],
+    CalibrationWorkspace=event_cal,
+    BackgroundWorkspace=event_bkg,
+    Target="Theta",
+    NumberBins=1000,
+    NormaliseBy="None",
+    Sum=True,
+)
+
+event_data2 = CloneWorkspace(event_data)
+
+event_data_group2 = WorkspaceGroup()
+event_data_group2.addWorkspace(event_data)
+event_data_group2.addWorkspace(event_data2)
+
+pd_out = WANDPowderReduction(
+    InputWorkspace=event_data_group2,
+    CalibrationWorkspace=event_cal,
+    BackgroundWorkspace=event_bkg,
+    Target="Theta",
+    NumberBins=1000,
+    NormaliseBy="None",
+    Sum=False,
+)
+
+event_data_group = GroupWorkspaces([event_data,event_data2])
+pd_out = WANDPowderReduction(
+    InputWorkspace=event_data_group,
+    CalibrationWorkspace=event_cal,
+    BackgroundWorkspace=event_bkg,
+    Target="Theta",
+    NumberBins=1000,
+    NormaliseBy="None",
+    Sum=False,
+)
\ No newline at end of file

calgoniotest.py

+from mantid.geometry import Goniometer
+from mantid.kernel import V3D, FloatTimeSeriesProperty
+import numpy as np
+from mantid.simpleapi import CreatePeaksWorkspace, HFIRCalculateGoniometer, AddTimeSeriesLog, LoadEmptyInstrument
+
+omega = np.deg2rad(42)
+
+R = np.array([[np.cos(omega), 0, np.sin(omega)],
+              [0, 1, 0],
+              [-np.sin(omega), 0, np.cos(omega)]])
+
+wl = 1.54
+k = 2*np.pi/wl
+theta = np.deg2rad(47)
+phi = np.deg2rad(13)
+
+q_lab = np.array([-np.sin(theta)*np.cos(phi),
+                   -np.sin(theta)*np.sin(phi),
+                   1 - np.cos(theta)]) * k
+
+q_sample = np.dot(np.linalg.inv(R), q_lab)
+
+peaks = CreatePeaksWorkspace(OutputType="LeanElasticPeak", NumberOfPeaks=0)
+
+p = peaks.createPeakQSample(q_sample)
+peaks.addPeak(p)
+
+HFIRCalculateGoniometer(peaks, wl, OverrideProperty=True, InnerGoniometer=True)
+
+g = Goniometer()
+g.setR(peaks.getPeak(0).getGoniometerMatrix())
+print(g.getEulerAngles('YZY'))
+assert np.isclose(g.getEulerAngles('YZY')[0], 42)
+
+
+chi = np.deg2rad(-3)
+phi = np.deg2rad(23)
+
+R1 = np.array([[np.cos(omega), 0, -np.sin(omega)], # omega 0,1,0,-1
+               [               0, 1,                 0],
+               [np.sin(omega), 0,  np.cos(omega)]])
+R2 = np.array([[ np.cos(chi),  np.sin(chi), 0], # chi 0,0,1,-1
+               [-np.sin(chi),  np.cos(chi), 0],
+               [              0,               0, 1]])
+R3 = np.array([[np.cos(phi), 0, -np.sin(phi)], # phi 0,1,0,-1
+               [             0, 1,               0],
+               [np.sin(phi), 0,  np.cos(phi)]])
+R = np.dot(np.dot(R1, R2), R3)
+
+q_sample = np.dot(np.linalg.inv(R), q_lab)
+
+
+peaks = CreatePeaksWorkspace(OutputType="LeanElasticPeak", NumberOfPeaks=0)
+
+p = peaks.createPeakQSample(q_sample)
+p.setGoniometerMatrix(np.dot(R2, R3))
+peaks.addPeak(p)
+
+HFIRCalculateGoniometer(peaks, wl)
+
+g = Goniometer()
+g.setR(peaks.getPeak(0).getGoniometerMatrix())
+print(g.getEulerAngles('YZY'))
+assert np.isclose(g.getEulerAngles('YZY')[0], -42)
+assert np.isclose(g.getEulerAngles('YZY')[1], 3)
+assert np.isclose(g.getEulerAngles('YZY')[2], -23)
+
+
+peaks = CreatePeaksWorkspace(NumberOfPeaks=0, OutputType="LeanElasticPeak")
+
+#peaks.run().getGoniometer().setR(np.dot(R1, R2))
+peaks.run().getGoniometer().setR(R)
+p = peaks.createPeakQSample(q_sample)
+peaks.addPeak(p)
+
+HFIRCalculateGoniometer(peaks, wl, OverrideProperty=True, InnerGoniometer=True)
+
+g = Goniometer()
+g.setR(peaks.getPeak(0).getGoniometerMatrix())
+print(g.getEulerAngles('YZY'))
+assert np.isclose(g.getEulerAngles('YZY')[0], -42)
+assert np.isclose(g.getEulerAngles('YZY')[1], 3)
+assert np.isclose(g.getEulerAngles('YZY')[2], -23)

centroidmd_leanelasticpeak.py

+from mantid.simpleapi import *
+
+peaks = CreatePeaksWorkspace(NumberOfPeaks=0)
+p = peaks.createPeakQSample((1,1,1)) # starting at [1,1,1]
+p.setWavelength(1.54)
+peaks.addPeak(p)
+
+ws = CreateMDWorkspace(Dimensions='3', Extents='0.5,1.5,0.5,1.5,0.5,1.5',
+                       Names='x,y,z', Units='rlu,rlu,rlu',
+                       Frames='QSample,QSample,QSample')
+
+# Create a fake peak at [1.1, 0.9, 1.05]
+FakeMDEventData(ws, PeakParams='1000000,1.1,0.9,1.05,0.2')
+
+centroid_peaks = CentroidPeaksMD(ws, peaks)
+print("Qsample (should be approx [1.1, 0.9, 1.05]) =",centroid_peaks.getPeak(0).getQSampleFrame())
+print("Wavelength =",centroid_peaks.getPeak(0).getWavelength())

compare_LeakElasticPeaks_test.py

+from mantid.simpleapi import *
+from mantid.geometry import OrientedLattice
+from itertools import permutations
+import numpy as np
+
+ol=OrientedLattice(5,7,12,90,90,120)
+ub=ol.getUB()
+print(ub)
+
+peaks = CreatePeaksWorkspace(NumberOfPeaks=0)
+
+peaks.addPeak(peaks.createPeakQSample(2*np.pi*np.dot(ub,[1,1,1])))
+peaks.addPeak(peaks.createPeakQSample(2*np.pi*np.dot(ub,[1,1,0])))
+peaks.addPeak(peaks.createPeakQSample(2*np.pi*np.dot(ub,[1,2,0])))
+
+
+peaks2 = CreatePeaksWorkspace(NumberOfPeaks=0)
+
+peaks2.addPeak(peaks2.createPeakQSample(2*np.pi*np.dot(ub,[1,1,1])))
+peaks2.addPeak(peaks2.createPeakQSample(2*np.pi*np.dot(ub,[1,1,0])))
+peaks2.addPeak(peaks2.createPeakQSample(2*np.pi*np.dot(ub,[1,2,0])))
+
+
+CompareWorkspaces(peaks, peaks2, Tolerance=1e-4)
+
+
+ws = CreateSampleWorkspace()
+peaks = CreatePeaksWorkspace(InstrumentWorkspace='ws')
+peaks2 = CreatePeaksWorkspace(InstrumentWorkspace='ws')
+peaks.getPeak(0).setRunNumber(123)
+CompareWorkspaces(peaks, peaks2, Tolerance=1e-4)

ellipsoid_shapes.py

+# import mantid algorithms, numpy and matplotlib
+from mantid.simpleapi import *
+import matplotlib.pyplot as plt
+import numpy as np
+
+ws = CreateMDWorkspace(Dimensions='3', Extents='-2,2,-2,2,-2,2',
+                       Names='Q_lab_x,Q_lab_y,Q_lab_z', Units='U,U,U',
+                       Frames='QLab,QLab,QLab',
+                       SplitInto='2', SplitThreshold='50')
+expt_info = CreateSampleWorkspace()
+ws.addExperimentInfo(expt_info)
+
+# add peak
+p = CreatePeaksWorkspace(InstrumentWorkspace='ws', NumberOfPeaks=0, OutputWorkspace='peaks')
+SetUB('peaks', 1,1,1,90,90,90)
+pk = p.createPeak([1,1,1]) # axes aligned with viewing axes
+p.addPeak(pk)
+
+a=0.3
+b=0.4
+c=0.5
+IntegratePeaksMD(InputWorkspace='ws', PeakRadius=[a,b,c], Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='ellipsoid')
+
+a=0.4
+b=0.3
+c=0.3
+b_in_a = 0.4
+b_in_b = 0.4
+b_in_c = 0.4
+b_out_a = 0.4
+b_out_b = 0.5
+b_out_c = 0.5
+IntegratePeaksMD(InputWorkspace='ws', PeakRadius=[a,b,c], BackgroundInnerRadius=[b_in_a, b_in_b, b_in_c], BackgroundOuterRadius=[b_out_a, b_out_b, b_out_c], Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='ellipsoid_bg')
+
+
+IntegratePeaksMD(InputWorkspace='ws',
+PeakRadius=0.3,
+        BackgroundInnerRadius=0.4,
+        BackgroundOuterRadius=0.5,
+        PeaksWorkspace='peaks', OutputWorkspace='sphere_bg')

ellipsoid_shell.py

+import matplotlib.pyplot as plt
+from matplotlib.path import Path
+from matplotlib.patches import Circle, Ellipse, Patch, PathPatch, Wedge
+from matplotlib.transforms import Affine2D, IdentityTransform
+import numpy as np
+
+class EllipticalShell(Patch):
+    """
+    Elliptical shell patch.
+    """
+
+    def __str__(self):
+        return f"EllipticalShell(center={self.center}, width={self.width}, height={self.height}, thick={self.thick}, angle={self.angle})"
+
+    def __init__(self, center, width, height, thick, angle=0.0, **kwargs):
+        """
+        Draw an elliptical ring centered at *x*, *y* center with outer width (horizontal diameter)
+        *width* and outer height (vertical diameter) *height* with a fractional ring thickness of *thick*
+        ( [r_outer - r_inner]/r_outer where r is the major radius).
+        Valid kwargs are:
+        %(Patch)s
+        """
+        super().__init__(**kwargs)
+        self.center = center
+        self.height, self.width = height, width
+        self.thick = thick
+        self.angle = angle
+        self._recompute_path()
+        # Note: This cannot be calculated until this is added to an Axes
+        self._patch_transform = IdentityTransform()
+
+    def _recompute_path(self):
+        # Form the outer ring
+        arc = Path.arc(theta1=0.0, theta2=360.0)
+        print(f'{arc=}')
+        # Draw the outer unit circle followed by a reversed and scaled inner circle
+        v1 = arc.vertices
+        v2 = arc.vertices[::-1] * float(1.0 - self.thick)  # self.thick is fractional thickness
+        print(f'{v1=} {v2=}')
+        v = np.vstack([v1, v2, v1[0, :], (0, 0)])
+        print(f'{v=}')
+        c = np.hstack([arc.codes, arc.codes, Path.MOVETO, Path.CLOSEPOLY])
+        print(f'{c=}')
+        c[len(arc.codes)] = Path.MOVETO
+        # Final shape acheieved through axis transformation. See _recompute_transform
+        self._path = Path(v, c)
+
+    def _recompute_transform(self):
+        """NOTE: This cannot be called until after this has been added
+                 to an Axes, otherwise unit conversion will fail. This
+                 makes it very important to call the accessor method and
+                 not directly access the transformation member variable.
+        """
+        center = (self.convert_xunits(self.center[0]), self.convert_yunits(self.center[1]))
+        width = self.convert_xunits(self.width)
+        height = self.convert_yunits(self.height)
+        self._patch_transform = Affine2D() \
+            .scale(width * 0.5, height * 0.5) \
+            .rotate_deg(self.angle) \
+            .translate(*center)
+
+    def get_patch_transform(self):
+        self._recompute_transform()
+        return self._patch_transform
+
+    def get_path(self):
+        if self._path is None:
+            self._recompute_path()
+        return self._path
+
+
+
+fig, ax = plt.subplots(subplot_kw={'aspect': 'equal'})
+
+e3 = EllipticalShell(center=(0, 0),
+                     width=1,
+                     height=1,
+                     thick=0.5,
+                     angle=0)
+ax.add_patch(e3)
+e3.set_facecolor((1, 0, 0))
+
+
+e1 = Ellipse(xy=(0, 0),
+             width=0.1,
+             height=1,
+             angle=0)
+ax.add_patch(e1)
+e1.set_facecolor((0, 0, 1))
+
+e2 = Ellipse(xy=(0, 0),
+             width=0.1,
+             height=1,
+             angle=90)
+ax.add_patch(e2)
+e2.set_facecolor((0, 1, 0))
+
+
+ax.set_xlim(-1, 1)
+ax.set_ylim(-1, 1)
+
+arc = Path.arc(theta1=0.0, theta2=360.0)
+v1 = arc.vertices
+v2 = arc.vertices[::-1] * float(1.0 - 0.5)  # self.thick is fractional thickness
+
+
+ax.scatter(v1[:,0], v1[:,1])
+ax.scatter(v2[:,0], v2[:,1])
+
+plt.show()

ellipsoid_shell3.py

+import matplotlib.pyplot as plt
+from matplotlib.path import Path
+from matplotlib.patches import Circle, Ellipse, Patch, PathPatch, Wedge
+from matplotlib.transforms import Affine2D, IdentityTransform
+import numpy as np
+
+class EllipticalShell(Patch):
+    """
+    Elliptical shell patch.
+    """
+
+    def __str__(self):
+        return f"EllipticalShell(center={self.center}, width={self.width}, height={self.height}, thick={self.thick}, angle={self.angle})"
+
+    def __init__(self, center, width, height, thick, angle=0.0, **kwargs):
+        """
+        Draw an elliptical ring centered at *x*, *y* center with outer width (horizontal diameter)
+        *width* and outer height (vertical diameter) *height* with a fractional ring thickness of *thick*
+        ( [r_outer - r_inner]/r_outer where r is the major radius).
+        Valid kwargs are:
+        %(Patch)s
+        """
+        super().__init__(**kwargs)
+        self.center = center
+        self.height, self.width = height, width
+        self.thick = thick
+        self.angle = angle
+        self._recompute_path()
+        # Note: This cannot be calculated until this is added to an Axes
+        self._patch_transform = IdentityTransform()
+
+    def _recompute_path(self):
+        # Form the outer ring
+        arc = Path.arc(theta1=0.0, theta2=360.0)
+        print(f'{arc=}')
+        # Draw the outer unit circle followed by a reversed and scaled inner circle
+        v1 = arc.vertices
+        v2 = np.zeros_like(v1)
+        v2[:, 0] = v1[::-1, 0] * float(1.0 - self.thick[0])
+        v2[:, 1] = v1[::-1, 1] * float(1.0 - self.thick[1])
+        print(f'{v1=} {v2=}')
+        v = np.vstack([v1, v2, v1[0, :], (0, 0)])
+        print(f'{v=}')
+        c = np.hstack([arc.codes, arc.codes, Path.MOVETO, Path.CLOSEPOLY])
+        print(f'{c=}')
+        c[len(arc.codes)] = Path.MOVETO
+        # Final shape acheieved through axis transformation. See _recompute_transform
+        self._path = Path(v, c)
+
+    def _recompute_transform(self):
+        """NOTE: This cannot be called until after this has been added
+                 to an Axes, otherwise unit conversion will fail. This
+                 makes it very important to call the accessor method and
+                 not directly access the transformation member variable.
+        """
+        center = (self.convert_xunits(self.center[0]), self.convert_yunits(self.center[1]))
+        width = self.convert_xunits(self.width)
+        height = self.convert_yunits(self.height)
+        self._patch_transform = Affine2D() \
+            .scale(width * 0.5, height * 0.5) \
+            .rotate_deg(self.angle) \
+            .translate(*center)
+
+    def get_patch_transform(self):
+        self._recompute_transform()
+        return self._patch_transform
+
+    def get_path(self):
+        if self._path is None:
+            self._recompute_path()
+        return self._path
+
+
+
+fig, ax = plt.subplots(subplot_kw={'aspect': 'equal'})
+
+e3 = EllipticalShell(center=(0, 0),
+                     width=1,
+                     height=1,
+                     thick=(0.5, 0.0),
+                     angle=0)
+ax.add_patch(e3)
+e3.set_facecolor((1, 0, 0))
+
+
+e1 = Ellipse(xy=(0, 0),
+             width=0.1,
+             height=1,
+             angle=0)
+ax.add_patch(e1)
+e1.set_facecolor((0, 0, 1))
+
+e2 = Ellipse(xy=(0, 0),
+             width=0.1,
+             height=1,
+             angle=90)
+ax.add_patch(e2)
+e2.set_facecolor((0, 1, 0))
+
+
+ax.set_xlim(-1, 1)
+ax.set_ylim(-1, 1)
+
+arc = Path.arc(theta1=0.0, theta2=360.0)
+v1 = arc.vertices
+v2 = arc.vertices[::-1] * float(1.0 - 0.5)  # self.thick is fractional thickness
+
+
+ax.scatter(v1[:,0], v1[:,1])
+ax.scatter(v2[:,0], v2[:,1])
+
+plt.show()

etest.py

+# import mantid algorithms, numpy and matplotlib
+from mantid.simpleapi import *
+import matplotlib.pyplot as plt
+import numpy as np
+
+Load(Filename='SXD23767.raw', OutputWorkspace='SXD23767', LoaderName='LoadRaw', LoaderVersion='3')
+ConvertToDiffractionMDWorkspace(InputWorkspace='SXD23767', OutputWorkspace='SXD23767MD', OneEventPerBin='0')
+FindSXPeaks(InputWorkspace='SXD23767', PeakFindingStrategy='AllPeaks', AbsoluteBackground=2000, 
+ResolutionStrategy='AbsoluteResolution', XResolution=200, PhiResolution=3, TwoThetaResolution=3, 
+OutputWorkspace='peaks')
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius=0.1, Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int', 
+UseOnePercentBackgroundCorrection=False)
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.2,0.3', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int2', 
+UseOnePercentBackgroundCorrection=False)
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius=0.1, PeaksWorkspace='peaks', OutputWorkspace='peaks_ints', 
+UseOnePercentBackgroundCorrection=False)
+
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.2,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_intbg', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius='0.2,0.2,0.1', BackgroundOuterRadius='0.2,0.3,0.2')
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.2,0.3', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_intbg2', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius='0.1,0.2,0.3', BackgroundOuterRadius='0.2,0.3,0.4')
+
+
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius=0.1, Ellipsoid=False, PeaksWorkspace='peaks', OutputWorkspace='peaks_int01', 
+UseOnePercentBackgroundCorrection=False)
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int02', 
+UseOnePercentBackgroundCorrection=False)
+
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius=0.1, Ellipsoid=False, PeaksWorkspace='peaks', OutputWorkspace='peaks_int11', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius=0.15, BackgroundOuterRadius=0.2)
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int12', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius='0.15,0.15,0.15', BackgroundOuterRadius='0.2,0.2,0.2')
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int03', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius='0.15,0.15,0.15', BackgroundOuterRadius='0.15,0.15,0.15')
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int04', 
+UseOnePercentBackgroundCorrection=False, BackgroundOuterRadius='0.1,0.1,0.1')
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius=0.1, Ellipsoid=False, PeaksWorkspace='peaks', OutputWorkspace='peaks_int05', 
+UseOnePercentBackgroundCorrection=False, BackgroundInnerRadius=0.15, BackgroundOuterRadius=0.15)
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int06', 
+UseOnePercentBackgroundCorrection=False, BackgroundOuterRadius='0.05,0.05,0.05')
+
+
+IntegratePeaksMD(InputWorkspace='SXD23767MD', PeakRadius='0.1,0.1,0.1', Ellipsoid=True, PeaksWorkspace='peaks', OutputWorkspace='peaks_int21', 
+UseOnePercentBackgroundCorrection=False, BackgroundOuterRadius='0.2,0.05,0.2')

etest_fake.py

+# import mantid algorithms, numpy and matplotlib
+from mantid.simpleapi import *
+import matplotlib.pyplot as plt
+import numpy as np
+
+ws = CreateMDWorkspace(Dimensions='3', Extents='0.5,1.5,0.5,1.5,0.5,1.5',