pycroscopy merge requestshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests2020-08-16T15:08:42Zhttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/236Update setup.py2020-08-16T15:08:42ZVasudevan, Rama K.Update setup.py*Created by: kevinsmia1939*
Fix the same as pyUSID based on bnavigator comment. Also remove Nose.*Created by: kevinsmia1939*
Fix the same as pyUSID based on bnavigator comment. Also remove Nose.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/197Ptychography -> ImageStack & dm3 working2019-01-19T13:52:05ZVasudevan, Rama K.Ptychography -> ImageStack & dm3 working*Created by: kbschliep*
Changed PtchographyTranslator to ImageStackTranslator
Opening folders of dm3's also works now after changing out read_image with read_dm3 and fixing a few related things. I also changed the hdf5 dataset names to...*Created by: kbschliep*
Changed PtchographyTranslator to ImageStackTranslator
Opening folders of dm3's also works now after changing out read_image with read_dm3 and fixing a few related things. I also changed the hdf5 dataset names to be more general rather than specific for Ptychography.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/241Added fix for singular spec dim2020-12-20T15:56:35ZVasudevan, Rama K.Added fix for singular spec dim*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/235Importing sidpy instead of pyUSID where appropriate2020-12-20T02:14:01ZVasudevan, Rama K.Importing sidpy instead of pyUSID where appropriate*Created by: ssomnath*
Please check, especially the BE notebook, before merging*Created by: ssomnath*
Please check, especially the BE notebook, before merginghttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/240Removed BE and Gmode components already present in BGlib2020-12-20T02:42:14ZVasudevan, Rama K.Removed BE and Gmode components already present in BGlib*Created by: ssomnath*
This should avoid unnecessary confusion in development and make it easier to completely reorganize this package. *Created by: ssomnath*
This should avoid unnecessary confusion in development and make it easier to completely reorganize this package. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/230Patching the LabviewH5Patcher2020-07-09T17:21:20ZVasudevan, Rama K.Patching the LabviewH5Patcher*Created by: ssomnath*
Accounting for naming differences in dimensions*Created by: ssomnath*
Accounting for naming differences in dimensionshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/231Not writing region references anymore for BE2020-07-10T21:20:42ZVasudevan, Rama K.Not writing region references anymore for BE*Created by: ssomnath*
Verified that SHO and loop fitting work without region references*Created by: ssomnath*
Verified that SHO and loop fitting work without region referenceshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/227Turning off printing massive UDVS step checking list2020-07-02T22:16:40ZVasudevan, Rama K.Turning off printing massive UDVS step checking list*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/148Fixes to documentation2018-04-29T18:22:51ZVasudevan, Rama K.Fixes to documentation*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/232Fixed bugs in import statements arising in cordoning of region references fun...2020-12-20T02:13:59ZVasudevan, Rama K.Fixed bugs in import statements arising in cordoning of region references funcs in pyUSID*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/217moved functions from fit_methods to be_relax_fit2020-04-24T21:09:50ZVasudevan, Rama K.moved functions from fit_methods to be_relax_fit*Created by: kongjy*
*Created by: kongjy*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/159More info in Process class + developing Translators2018-05-28T15:29:47ZVasudevan, Rama K.More info in Process class + developing Translators*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/216added check for dimensionality of spectroscopic values in read_spectrograms t...2020-04-17T19:53:04ZVasudevan, Rama K.added check for dimensionality of spectroscopic values in read_spectrograms to accomodate for data acquired with polarizer.*Created by: kongjy*
Previously, read_spectrograms did not take into account attenuation column in wavelength txt file associated with hyperspectral image *Created by: kongjy*
Previously, read_spectrograms did not take into account attenuation column in wavelength txt file associated with hyperspectral image https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/229Patching initial Labview generated H5 files2020-07-07T21:02:41ZVasudevan, Rama K.Patching initial Labview generated H5 files*Created by: ssomnath*
* Ensuring that the correct dimensions labels and units exist
* Adding time, date, and filename metadata to the measurement groups for consistency with the older BE translators*Created by: ssomnath*
* Ensuring that the correct dimensions labels and units exist
* Adding time, date, and filename metadata to the measurement groups for consistency with the older BE translatorshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/228Fixed silly error in post-translation check2020-07-06T17:41:55ZVasudevan, Rama K.Fixed silly error in post-translation check*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/211Edits to PiFM Translator, Added a Bandpass Filter class to processing/fft2019-10-02T01:16:25ZVasudevan, Rama K.Edits to PiFM Translator, Added a Bandpass Filter class to processing/fft*Created by: rajgiriUW*
The PiFM Translator seemed to fail for the newest version of software that includes a Power Spectrum, and also the description for the conventional spectra is now 7 lines instead of 3 so that part needed to chang...*Created by: rajgiriUW*
The PiFM Translator seemed to fail for the newest version of software that includes a Power Spectrum, and also the description for the conventional spectra is now 7 lines instead of 3 so that part needed to change. Checked on a few old datasets from older versions of software and it seems to work.
Added a Bandpass Filter class to processing/fft that allows an optional finite impulse response (or boxcar). A harmonic filter of num_harm = 1 is essentially the same thing, but the fir option is new. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/226More bug fixes to ODF translator2020-07-02T22:12:10ZVasudevan, Rama K.More bug fixes to ODF translator*Created by: ssomnath*
Now scales number of cycles to match with size of binary data
Less verbose output to stdout*Created by: ssomnath*
Now scales number of cycles to match with size of binary data
Less verbose output to stdouthttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/166Update to latest nanonispy release2018-06-05T11:41:37ZVasudevan, Rama K.Update to latest nanonispy release*Created by: donpatrice*
This should also close https://github.com/pycroscopy/pycroscopy/issues/163.*Created by: donpatrice*
This should also close https://github.com/pycroscopy/pycroscopy/issues/163.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/180Fixes to gmode_tune translator2018-06-19T19:45:41ZVasudevan, Rama K.Fixes to gmode_tune translator*Created by: Liambcollins*
*Created by: Liambcollins*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/225Bug fixes to BE ODF translation2020-07-02T21:22:09ZVasudevan, Rama K.Bug fixes to BE ODF translation*Created by: ssomnath*
* Correcting inconsistencies and errors in parameter values from old (circa 2010-2012) parameter files
* Catching rare situations when data files were empty
* Generating dummy BE arrays correctly now
* Immediat...*Created by: ssomnath*
* Correcting inconsistencies and errors in parameter values from old (circa 2010-2012) parameter files
* Catching rare situations when data files were empty
* Generating dummy BE arrays correctly now
* Immediately catching situations when parameter values do not match with expected options
* Added a lot of print statements in ``verbose`` mode to debug problems quickly