pycroscopy merge requestshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests2020-12-20T02:13:53Zhttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/209Centralized Translation2020-12-20T02:13:53ZVasudevan, Rama K.Centralized Translation*Created by: ssomnath*
Translators popular at CNMS now implement a "is_valid_file()" function that tests whether or not a provided file can be translated by the translator.
New "ingest()" function accepts any file and translates to ...*Created by: ssomnath*
Translators popular at CNMS now implement a "is_valid_file()" function that tests whether or not a provided file can be translated by the translator.
New "ingest()" function accepts any file and translates to h5USID file
This feature addition will be essential for the data ingestion pipeline being developed by CADES for CNMShttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/212SHO and Loop Fitter as pyUSID.Process Classes2020-12-20T02:13:55ZVasudevan, Rama K.SHO and Loop Fitter as pyUSID.Process Classes*Created by: ssomnath*
Replaced majority of pycroscopy.analysis with content from https://github.com/ssomnath/be_processes
Verified with a few datasets.
**Note: This needs [pyUSID > 0.0.8](https://github.com/pycroscopy/pyUSID/rel...*Created by: ssomnath*
Replaced majority of pycroscopy.analysis with content from https://github.com/ssomnath/be_processes
Verified with a few datasets.
**Note: This needs [pyUSID > 0.0.8](https://github.com/pycroscopy/pyUSID/releases/tag/0.0.8)**https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/213Fixed Spectroscopic Dimensions in TR-KPFM translator2020-04-03T19:25:41ZVasudevan, Rama K.Fixed Spectroscopic Dimensions in TR-KPFM translator*Created by: Liambcollins*
-- Changed excit_wfm to only include bias values in the on field.
-- Off field 0V step is now reflected in the field spec dimension
*Created by: Liambcollins*
-- Changed excit_wfm to only include bias values in the on field.
-- Off field 0V step is now reflected in the field spec dimension
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/224Faster generation of spectroscopic values for DC and AC spectroscopy2020-06-30T19:00:25ZVasudevan, Rama K.Faster generation of spectroscopic values for DC and AC spectroscopy*Created by: ssomnath*
Using simple lists instead of highly inefficient np.append() operations. Could vectorize to speed up even more. *Created by: ssomnath*
Using simple lists instead of highly inefficient np.append() operations. Could vectorize to speed up even more. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/188First working translator.2018-07-12T16:51:15ZVasudevan, Rama K.First working translator.*Created by: TommasoCostanzo*
This is the first version of the "AsylumResearch hdf5" to "pyUSID hdf5"
translator. It was tested only on a couple of files, so more testing is
required. Also it is necassary to double-check that Ancillar...*Created by: TommasoCostanzo*
This is the first version of the "AsylumResearch hdf5" to "pyUSID hdf5"
translator. It was tested only on a couple of files, so more testing is
required. Also it is necassary to double-check that Ancillary dataset
(especially Position_Indices) are correct.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/225Bug fixes to BE ODF translation2020-07-02T21:22:09ZVasudevan, Rama K.Bug fixes to BE ODF translation*Created by: ssomnath*
* Correcting inconsistencies and errors in parameter values from old (circa 2010-2012) parameter files
* Catching rare situations when data files were empty
* Generating dummy BE arrays correctly now
* Immediat...*Created by: ssomnath*
* Correcting inconsistencies and errors in parameter values from old (circa 2010-2012) parameter files
* Catching rare situations when data files were empty
* Generating dummy BE arrays correctly now
* Immediately catching situations when parameter values do not match with expected options
* Added a lot of print statements in ``verbose`` mode to debug problems quicklyhttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/180Fixes to gmode_tune translator2018-06-19T19:45:41ZVasudevan, Rama K.Fixes to gmode_tune translator*Created by: Liambcollins*
*Created by: Liambcollins*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/166Update to latest nanonispy release2018-06-05T11:41:37ZVasudevan, Rama K.Update to latest nanonispy release*Created by: donpatrice*
This should also close https://github.com/pycroscopy/pycroscopy/issues/163.*Created by: donpatrice*
This should also close https://github.com/pycroscopy/pycroscopy/issues/163.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/226More bug fixes to ODF translator2020-07-02T22:12:10ZVasudevan, Rama K.More bug fixes to ODF translator*Created by: ssomnath*
Now scales number of cycles to match with size of binary data
Less verbose output to stdout*Created by: ssomnath*
Now scales number of cycles to match with size of binary data
Less verbose output to stdouthttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/211Edits to PiFM Translator, Added a Bandpass Filter class to processing/fft2019-10-02T01:16:25ZVasudevan, Rama K.Edits to PiFM Translator, Added a Bandpass Filter class to processing/fft*Created by: rajgiriUW*
The PiFM Translator seemed to fail for the newest version of software that includes a Power Spectrum, and also the description for the conventional spectra is now 7 lines instead of 3 so that part needed to chang...*Created by: rajgiriUW*
The PiFM Translator seemed to fail for the newest version of software that includes a Power Spectrum, and also the description for the conventional spectra is now 7 lines instead of 3 so that part needed to change. Checked on a few old datasets from older versions of software and it seems to work.
Added a Bandpass Filter class to processing/fft that allows an optional finite impulse response (or boxcar). A harmonic filter of num_harm = 1 is essentially the same thing, but the fir option is new. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/228Fixed silly error in post-translation check2020-07-06T17:41:55ZVasudevan, Rama K.Fixed silly error in post-translation check*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/229Patching initial Labview generated H5 files2020-07-07T21:02:41ZVasudevan, Rama K.Patching initial Labview generated H5 files*Created by: ssomnath*
* Ensuring that the correct dimensions labels and units exist
* Adding time, date, and filename metadata to the measurement groups for consistency with the older BE translators*Created by: ssomnath*
* Ensuring that the correct dimensions labels and units exist
* Adding time, date, and filename metadata to the measurement groups for consistency with the older BE translatorshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/216added check for dimensionality of spectroscopic values in read_spectrograms t...2020-04-17T19:53:04ZVasudevan, Rama K.added check for dimensionality of spectroscopic values in read_spectrograms to accomodate for data acquired with polarizer.*Created by: kongjy*
Previously, read_spectrograms did not take into account attenuation column in wavelength txt file associated with hyperspectral image *Created by: kongjy*
Previously, read_spectrograms did not take into account attenuation column in wavelength txt file associated with hyperspectral image https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/159More info in Process class + developing Translators2018-05-28T15:29:47ZVasudevan, Rama K.More info in Process class + developing Translators*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/217moved functions from fit_methods to be_relax_fit2020-04-24T21:09:50ZVasudevan, Rama K.moved functions from fit_methods to be_relax_fit*Created by: kongjy*
*Created by: kongjy*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/232Fixed bugs in import statements arising in cordoning of region references fun...2020-12-20T02:13:59ZVasudevan, Rama K.Fixed bugs in import statements arising in cordoning of region references funcs in pyUSID*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/148Fixes to documentation2018-04-29T18:22:51ZVasudevan, Rama K.Fixes to documentation*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/227Turning off printing massive UDVS step checking list2020-07-02T22:16:40ZVasudevan, Rama K.Turning off printing massive UDVS step checking list*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/231Not writing region references anymore for BE2020-07-10T21:20:42ZVasudevan, Rama K.Not writing region references anymore for BE*Created by: ssomnath*
Verified that SHO and loop fitting work without region references*Created by: ssomnath*
Verified that SHO and loop fitting work without region referenceshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/230Patching the LabviewH5Patcher2020-07-09T17:21:20ZVasudevan, Rama K.Patching the LabviewH5Patcher*Created by: ssomnath*
Accounting for naming differences in dimensions*Created by: ssomnath*
Accounting for naming differences in dimensions