pycroscopy merge requestshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests2020-12-20T02:13:55Zhttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/212SHO and Loop Fitter as pyUSID.Process Classes2020-12-20T02:13:55ZVasudevan, Rama K.SHO and Loop Fitter as pyUSID.Process Classes*Created by: ssomnath*
Replaced majority of pycroscopy.analysis with content from https://github.com/ssomnath/be_processes
Verified with a few datasets.
**Note: This needs [pyUSID > 0.0.8](https://github.com/pycroscopy/pyUSID/rel...*Created by: ssomnath*
Replaced majority of pycroscopy.analysis with content from https://github.com/ssomnath/be_processes
Verified with a few datasets.
**Note: This needs [pyUSID > 0.0.8](https://github.com/pycroscopy/pyUSID/releases/tag/0.0.8)**https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/208added be relaxation analysis and viz tools, along with a jupyter notebook dem...2020-04-24T20:52:49ZVasudevan, Rama K.added be relaxation analysis and viz tools, along with a jupyter notebook demonstrating how to use them*Created by: kongjy*
*Created by: kongjy*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/201translator for data from molecular vista's photoinduced force microscope2019-01-13T04:50:29ZVasudevan, Rama K.translator for data from molecular vista's photoinduced force microscope*Created by: kongjy*
creates h5 file for hyperspectral (spectrogram) and pifm (image) files with or without point spectra*Created by: kongjy*
creates h5 file for hyperspectral (spectrogram) and pifm (image) files with or without point spectrahttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/193Add support for Nanonis's sxm file format2020-12-20T02:14:57ZVasudevan, Rama K.Add support for Nanonis's sxm file format*Created by: donpatrice*
This pull refactors the NanonisTraslator class a bit to make it possible to support the three file formats sxm, 3ds and dat. At the moment only sxm and 3ds is supported.*Created by: donpatrice*
This pull refactors the NanonisTraslator class a bit to make it possible to support the three file formats sxm, 3ds and dat. At the moment only sxm and 3ds is supported.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/224Faster generation of spectroscopic values for DC and AC spectroscopy2020-06-30T19:00:25ZVasudevan, Rama K.Faster generation of spectroscopic values for DC and AC spectroscopy*Created by: ssomnath*
Using simple lists instead of highly inefficient np.append() operations. Could vectorize to speed up even more. *Created by: ssomnath*
Using simple lists instead of highly inefficient np.append() operations. Could vectorize to speed up even more. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/200Rama dev merging for TRKPFM Translator Update2019-02-13T19:03:20ZVasudevan, Rama K.Rama dev merging for TRKPFM Translator Update*Created by: ramav87*
Updated TRKPFM to use USID utilities*Created by: ramav87*
Updated TRKPFM to use USID utilitieshttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/174Documentation updates2018-06-14T15:59:04ZVasudevan, Rama K.Documentation updates*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/177Fixes to Gline translators2018-06-18T15:42:58ZVasudevan, Rama K.Fixes to Gline translators*Created by: Liambcollins*
*Created by: Liambcollins*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/189Tested on Force spectroscopy and fixed few bugs2018-07-22T12:51:46ZVasudevan, Rama K.Tested on Force spectroscopy and fixed few bugs*Created by: TommasoCostanzo*
Now if a note value is not found a NameError is raised.
Instrument model, translator, and Asylum Research software version are
present as attribute at the root of the hdf5 file produced.
Position indices...*Created by: TommasoCostanzo*
Now if a note value is not found a NameError is raised.
Instrument model, translator, and Asylum Research software version are
present as attribute at the root of the hdf5 file produced.
Position indices are correct.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/213Fixed Spectroscopic Dimensions in TR-KPFM translator2020-04-03T19:25:41ZVasudevan, Rama K.Fixed Spectroscopic Dimensions in TR-KPFM translator*Created by: Liambcollins*
-- Changed excit_wfm to only include bias values in the on field.
-- Off field 0V step is now reflected in the field spec dimension
*Created by: Liambcollins*
-- Changed excit_wfm to only include bias values in the on field.
-- Off field 0V step is now reflected in the field spec dimension
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/209Centralized Translation2020-12-20T02:13:53ZVasudevan, Rama K.Centralized Translation*Created by: ssomnath*
Translators popular at CNMS now implement a "is_valid_file()" function that tests whether or not a provided file can be translated by the translator.
New "ingest()" function accepts any file and translates to ...*Created by: ssomnath*
Translators popular at CNMS now implement a "is_valid_file()" function that tests whether or not a provided file can be translated by the translator.
New "ingest()" function accepts any file and translates to h5USID file
This feature addition will be essential for the data ingestion pipeline being developed by CADES for CNMShttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/184updates in simulation folder and simulation jupyter notebooks2018-07-05T12:03:31ZVasudevan, Rama K.updates in simulation folder and simulation jupyter notebooks*Created by: ealopez*
Hi!
I added some files with new functions related to afm simulations. I also added a jupyter notebook, and modified two previous notebooks with some feedback previously provided.
Please let me know if something n...*Created by: ealopez*
Hi!
I added some files with new functions related to afm simulations. I also added a jupyter notebook, and modified two previous notebooks with some feedback previously provided.
Please let me know if something needs further change.
Thanks!https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/202Updates to PiFM/Igor translator2019-02-04T19:37:08ZVasudevan, Rama K.Updates to PiFM/Igor translator*Created by: rajgiriUW*
Some logic and bug fixes for these translators. PiFM reorganized and slightly rewritten to match logical layout of Igor translator.
These also add two new options for ease of use in data science applications.
...*Created by: rajgiriUW*
Some logic and bug fixes for these translators. PiFM reorganized and slightly rewritten to match logical layout of Igor translator.
These also add two new options for ease of use in data science applications.
1) adding a grp_name parameters so you can rename from the default (and usually uninformative) 'Measurement' name
2) adding an append_path that lets you add the translated file to an existing *.h5 file. https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/187Str eat dev2018-07-11T11:36:57ZVasudevan, Rama K.Str eat dev*Created by: str-eat*
Implemented the gsf and gwy translators. Although the gwy translator is only for image sets - brick and xyz have yet to be implemented. Spectra translator is implemented but has not been fully tested. Need a spectr...*Created by: str-eat*
Implemented the gsf and gwy translators. Although the gwy translator is only for image sets - brick and xyz have yet to be implemented. Spectra translator is implemented but has not been fully tested. Need a spectra file to test.https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/108Cades dev2017-07-26T11:42:24ZVasudevan, Rama K.Cades dev*Created by: CompPhysChris*
*Created by: CompPhysChris*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/179Liam dev2018-06-19T17:21:21ZVasudevan, Rama K.Liam dev*Created by: Liambcollins*
Chris can you check this. It wasn't working for my notebook*Created by: Liambcollins*
Chris can you check this. It wasn't working for my notebookhttps://code.ornl.gov/rvv/pycroscopy/-/merge_requests/153BE bug fixes and documentation updates2018-05-03T21:29:52ZVasudevan, Rama K.BE bug fixes and documentation updates*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/181Replaced core with pyUSID2018-06-28T12:54:06ZVasudevan, Rama K.Replaced core with pyUSID*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/165Documentation updates + skeleton for Gwyddion Translator2018-06-01T18:29:59ZVasudevan, Rama K.Documentation updates + skeleton for Gwyddion Translator*Created by: ssomnath*
*Created by: ssomnath*
https://code.ornl.gov/rvv/pycroscopy/-/merge_requests/191Str eat dev2019-02-13T19:01:02ZVasudevan, Rama K.Str eat dev*Created by: str-eat*
delete the datasets I used for testing during development of gwyddion translator
- [x] 131017Spectroscopy002.gwy
- [x] 131017Spectroscopy002.h5
- [x] SingFreqPFM_0003.gwy
- [x] chip.h5
- [x] samples.h5*Created by: str-eat*
delete the datasets I used for testing during development of gwyddion translator
- [x] 131017Spectroscopy002.gwy
- [x] 131017Spectroscopy002.h5
- [x] SingFreqPFM_0003.gwy
- [x] chip.h5
- [x] samples.h5