pycroscopy issueshttps://code.ornl.gov/rvv/pycroscopy/-/issues2016-12-09T16:01:01Zhttps://code.ornl.gov/rvv/pycroscopy/-/issues/31Port tree class2016-12-09T16:01:01ZVasudevan, Rama K.Port tree class*Created by: ssomnath*
Port the tree class from PySPM to pcroscopy
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*Created by: ssomnath*
Port the tree class from PySPM to pcroscopy
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https://code.ornl.gov/rvv/pycroscopy/-/issues/27Implement Process class2017-11-11T15:50:12ZVasudevan, Rama K.Implement Process class*Created by: ssomnath*
This class will be very similar to the model class, except that there is no optimization. Loop projection would be the first class that extends this. Other examples include FFT filtering.
┆Issue is synchronized w...*Created by: ssomnath*
This class will be very similar to the model class, except that there is no optimization. Loop projection would be the first class that extends this. Other examples include FFT filtering.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202089121053936)
https://code.ornl.gov/rvv/pycroscopy/-/issues/30BE - take conjugates to ensure positive Q values2016-12-15T16:16:09ZVasudevan, Rama K.BE - take conjugates to ensure positive Q values*Created by: ssomnath*
Check phase of raw data.
You will have to account for phase wrapping.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202084174758542)
*Created by: ssomnath*
Check phase of raw data.
You will have to account for phase wrapping.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202084174758542)
https://code.ornl.gov/rvv/pycroscopy/-/issues/24Complete BE SHO Guess2016-12-06T12:41:48ZVasudevan, Rama K.Complete BE SHO Guess*Created by: ssomnath*
Adapt the PySPM guess strategy to the same format as the ones in the guess methods. This should be trivial.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202083147800147)
*Created by: ssomnath*
Adapt the PySPM guess strategy to the same format as the ones in the guess methods. This should be trivial.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202083147800147)
https://code.ornl.gov/rvv/pycroscopy/-/issues/25Better index tracking in the model class2016-12-06T19:19:56ZVasudevan, Rama K.Better index tracking in the model class*Created by: ssomnath*
When reading a large dataset in chunks, the get_data method updates the start and end indices by itself. This would cause serious problems when fitting since the indices would have moved to the next chunk even bef...*Created by: ssomnath*
When reading a large dataset in chunks, the get_data method updates the start and end indices by itself. This would cause serious problems when fitting since the indices would have moved to the next chunk even before the get_guess method can be called. Need a better book-keeping method to keep track of indices of the current chunk
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https://code.ornl.gov/rvv/pycroscopy/-/issues/26Implement fitting in Model2017-01-13T15:52:11ZVasudevan, Rama K.Implement fitting in Model*Created by: ssomnath*
Also implement SHO fitting.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202083098594927)
*Created by: ssomnath*
Also implement SHO fitting.
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202083098594927)
https://code.ornl.gov/rvv/pycroscopy/-/issues/12Sphinx docs2016-10-09T22:54:39ZVasudevan, Rama K.Sphinx docs*Created by: nlaanait*
I setup a sphinx conf.py and built the documentation (sphinx-apidoc) . I also setup a webhooks for the repo to communicate with readthedocs.io for automatic update of docs.
All of the above works. But the package ...*Created by: nlaanait*
I setup a sphinx conf.py and built the documentation (sphinx-apidoc) . I also setup a webhooks for the repo to communicate with readthedocs.io for automatic update of docs.
All of the above works. But the package structure (due to imports) needs to be updated first.
Anyway checkout the master-branch.
Help needed!
https://code.ornl.gov/rvv/pycroscopy/-/issues/22Generic data visualizer2019-10-15T18:20:30ZVasudevan, Rama K.Generic data visualizer*Created by: ssomnath*
Should take any MAIN dataset regardless of the dimensionality. Core components implemented in viz.jupyter_utils
┆Issue is synchronized with this [Asana task](https://app.asana.com/0/200029249765524/202079868929...*Created by: ssomnath*
Should take any MAIN dataset regardless of the dimensionality. Core components implemented in viz.jupyter_utils
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https://code.ornl.gov/rvv/pycroscopy/-/issues/21Simplify the plot_utils module2017-01-13T15:52:01ZVasudevan, Rama K.Simplify the plot_utils module*Created by: ssomnath*
Remove any redundant functions.
Effectively almost all functions consist of a set of line plots or image plots.
Make some general functions where appropriate - see plotLoops as a good example
Its OK to have quick ...*Created by: ssomnath*
Remove any redundant functions.
Effectively almost all functions consist of a set of line plots or image plots.
Make some general functions where appropriate - see plotLoops as a good example
Its OK to have quick plotting functions for specific use cases. However these functions shouldn't have to reinvent the wheel.
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https://code.ornl.gov/rvv/pycroscopy/-/issues/18latest pycroscopy build (0.0a6) has the following error during import2016-12-03T08:56:50ZVasudevan, Rama K.latest pycroscopy build (0.0a6) has the following error during import*Created by: nlaanait*
/Users/nl7/anaconda2/lib/python2.7/site-packages/pycroscopy/io/hdf_utils.py in <module>()
10 from warnings import warn
11 import numpy as np
---> 12 from .microdata import MicroDataset
13
14 *...*Created by: nlaanait*
/Users/nl7/anaconda2/lib/python2.7/site-packages/pycroscopy/io/hdf_utils.py in <module>()
10 from warnings import warn
11 import numpy as np
---> 12 from .microdata import MicroDataset
13
14 **all** = ['getDataSet', 'getH5DsetRefs', 'getH5RegRefIndices', 'get_dimensionality', 'get_sort_order',
ImportError: No module named microdata
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https://code.ornl.gov/rvv/pycroscopy/-/issues/20Units and labels for data2016-12-14T14:44:50ZVasudevan, Rama K.Units and labels for data*Created by: ssomnath*
All main datasets should have appropriate labels and units attributes to tell visualizers / plotters about the data.
This applies to all translators.
The processing and analysis classes should either take copy th...*Created by: ssomnath*
All main datasets should have appropriate labels and units attributes to tell visualizers / plotters about the data.
This applies to all translators.
The processing and analysis classes should either take copy these attributes from the source dataset or create new attributes as appropriate
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