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Vasudevan, Rama K
pycroscopy
Commits
d703117e
Commit
d703117e
authored
Nov 22, 2017
by
syz
Browse files
Merge remote-tracking branch 'origin/cades_dev' into cades_dev_local
# Conflicts: # setup.py
parents
972bc0e5
f314598f
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491
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docs/_autosummary/backreferences/pycroscopy.hdf_utils.getH5DsetRefs.examples
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d703117e
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
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@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_02_writing_to_h5_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_02_writing_to_h5_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_02_writing_to_h5.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_02_writing_to_h5.py`
.. raw:: html
.. raw:: html
...
@@ -19,7 +19,7 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
...
@@ -19,7 +19,7 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_02_writing_to_h5.py`
* :ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_02_writing_to_h5.py`
.. raw:: html
.. raw:: html
...
@@ -27,9 +27,9 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
...
@@ -27,9 +27,9 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_05_data_processing_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_05_data_processing.py`
.. raw:: html
.. raw:: html
...
@@ -37,4 +37,40 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
...
@@ -37,4 +37,40 @@ Examples using ``pycroscopy.hdf_utils.getH5DsetRefs``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
* :ref:`sphx_glr_auto_examples_dev_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath** 8/8/2017">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_02_writing_to_h5_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_02_writing_to_h5.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_02_writing_to_h5.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath**">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_all_main.examples
0 → 100644
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d703117e
Examples using ``pycroscopy.hdf_utils.get_all_main``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_attr.examples
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d703117e
...
@@ -27,9 +27,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -27,9 +27,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_02_writing_to_h5_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_02_writing_to_h5_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_02_writing_to_h5.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_02_writing_to_h5.py`
.. raw:: html
.. raw:: html
...
@@ -37,7 +37,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -37,7 +37,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_02_writing_to_h5.py`
* :ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_02_writing_to_h5.py`
.. raw:: html
.. raw:: html
...
@@ -45,9 +45,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -45,9 +45,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_03_multidimensional_data_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_03_multidimensional_data.py`
.. raw:: html
.. raw:: html
...
@@ -55,7 +55,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -55,7 +55,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
* :ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_03_multidimensional_data.py`
.. raw:: html
.. raw:: html
...
@@ -63,9 +63,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -63,9 +63,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_04_parallel_computing_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_04_parallel_computing_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_04_parallel_computing.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_04_parallel_computing.py`
.. raw:: html
.. raw:: html
...
@@ -73,7 +73,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -73,7 +73,7 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_04_parallel_computing.py`
* :ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_04_parallel_computing.py`
.. raw:: html
.. raw:: html
...
@@ -81,9 +81,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -81,9 +81,9 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_05_data_processing_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_05_data_processing.py`
.. raw:: html
.. raw:: html
...
@@ -91,4 +91,94 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
...
@@ -91,4 +91,94 @@ Examples using ``pycroscopy.hdf_utils.get_attr``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
* :ref:`sphx_glr_auto_examples_dev_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath** 8/8/2017">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_02_writing_to_h5_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_02_writing_to_h5.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_02_writing_to_h5.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath** 8/8/2017">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath, Chris R. Smith**">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_04_parallel_computing_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_04_parallel_computing.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_04_parallel_computing.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath**">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_attributes.examples
0 → 100644
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d703117e
Examples using ``pycroscopy.hdf_utils.get_attributes``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_data_descriptor.examples
0 → 100644
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d703117e
Examples using ``pycroscopy.hdf_utils.get_data_descriptor``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_dimensionality.examples
0 → 100644
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d703117e
Examples using ``pycroscopy.hdf_utils.get_dimensionality``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_formatted_labels.examples
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d703117e
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.get_formatted_labels``
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.get_formatted_labels``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_03_multidimensional_data_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_03_multidimensional_data.py`
.. raw:: html
.. raw:: html
...
@@ -19,4 +19,40 @@ Examples using ``pycroscopy.hdf_utils.get_formatted_labels``
...
@@ -19,4 +19,40 @@ Examples using ``pycroscopy.hdf_utils.get_formatted_labels``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
* :ref:`sphx_glr_auto_examples_dev_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath** 8/8/2017">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_sort_order.examples
View file @
d703117e
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.get_sort_order``
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.get_sort_order``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_03_multidimensional_data_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_03_multidimensional_data.py`
.. raw:: html
.. raw:: html
...
@@ -19,4 +19,40 @@ Examples using ``pycroscopy.hdf_utils.get_sort_order``
...
@@ -19,4 +19,40 @@ Examples using ``pycroscopy.hdf_utils.get_sort_order``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_03_multidimensional_data.py`
* :ref:`sphx_glr_auto_examples_dev_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath** 8/8/2017">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_03_multidimensional_data_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_03_multidimensional_data.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_source_dataset.examples
0 → 100644
View file @
d703117e
Examples using ``pycroscopy.hdf_utils.get_source_dataset``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.get_unit_values.examples
0 → 100644
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d703117e
Examples using ``pycroscopy.hdf_utils.get_unit_values``
^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="11/11/2017">
.. only:: html
.. figure:: /auto_examples/user_tutorials/images/thumb/sphx_glr_plot_tutorial_01_interacting_w_h5_files_thumb.png
:ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_examples_user_tutorials_plot_tutorial_01_interacting_w_h5_files.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.linkRefs.examples
View file @
d703117e
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.linkRefs``
...
@@ -9,9 +9,9 @@ Examples using ``pycroscopy.hdf_utils.linkRefs``
.. only:: html
.. only:: html
.. figure:: /auto_examples/images/thumb/sphx_glr_tutorial_05_data_processing_thumb.png
.. figure:: /auto_examples/
dev_tutorials/
images/thumb/sphx_glr_
plot_
tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
:ref:`sphx_glr_auto_examples_
dev_tutorials_plot_
tutorial_05_data_processing.py`
.. raw:: html
.. raw:: html
...
@@ -19,4 +19,22 @@ Examples using ``pycroscopy.hdf_utils.linkRefs``
...
@@ -19,4 +19,22 @@ Examples using ``pycroscopy.hdf_utils.linkRefs``
.. only:: not html
.. only:: not html
* :ref:`sphx_glr_auto_examples_tutorial_05_data_processing.py`
* :ref:`sphx_glr_auto_examples_dev_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="**Suhas Somnath**">
.. only:: html
.. figure:: /auto_tutorials/images/thumb/sphx_glr_plot_tutorial_05_data_processing_thumb.png
:ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
.. raw:: html
</div>
.. only:: not html
* :ref:`sphx_glr_auto_tutorials_plot_tutorial_05_data_processing.py`
docs/_autosummary/backreferences/pycroscopy.hdf_utils.print_tree.examples
View file @
d703117e
...
@@ -5,13 +5,13 @@ Examples using ``pycroscopy.hdf_utils.print_tree``
...
@@ -5,13 +5,13 @@ Examples using ``pycroscopy.hdf_utils.print_tree``
.. raw:: html
.. raw:: html
<div class="sphx-glr-thumbcontainer" tooltip="
Conventionally, the h5py package is used to create, read, write, and modify h5 files
.">