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Vasudevan, Rama K
pycroscopy
Commits
568bdf88
Commit
568bdf88
authored
May 23, 2017
by
Somnath, Suhas
Browse files
Corrected imports to match new utils folder name
parent
a62a4053
Changes
19
Hide whitespace changes
Inline
Side-by-side
pycroscopy/io/__init__.py
View file @
568bdf88
from
io.translators.utils
import
dm4reader
,
parse_dm3
from
io.translators.
df_
utils
import
dm4reader
,
parse_dm3
from
.
import
be_hdf_utils
from
.
import
hdf_utils
from
.
import
io_hdf5
...
...
pycroscopy/io/translators/__init__.py
View file @
568bdf88
from
io.translators.utils
import
gmode_utils
,
be_utils
from
io.translators.
df_
utils
import
gmode_utils
,
be_utils
from
.
import
be_odf
from
.
import
be_odf_relaxation
from
.
import
be_utils
...
...
pycroscopy/io/translators/be_odf.py
View file @
568bdf88
...
...
@@ -13,8 +13,8 @@ from warnings import warn
import
numpy
as
np
from
scipy.io.matlab
import
loadmat
# To load parameters stored in Matlab .mat file
from
io.translators.utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
parmsToDict
,
generatePlotGroups
,
createSpecVals
,
\
requires_conjugate
,
nf32
from
io.translators.
df_
utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
parmsToDict
,
generatePlotGroups
,
\
createSpecVals
,
requires_conjugate
,
nf32
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
linkRefs
,
calc_chunks
...
...
pycroscopy/io/translators/be_odf_relaxation.py
View file @
568bdf88
...
...
@@ -13,7 +13,7 @@ from warnings import warn
import
numpy
as
np
# For array operations
from
scipy.io.matlab
import
loadmat
# To load parameters stored in Matlab .mat file
from
io.translators.utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
generatePlotGroups
,
createSpecVals
,
nf32
from
io.translators.
df_
utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
generatePlotGroups
,
createSpecVals
,
nf32
from
.translator
import
Translator
# Because this class extends the abstract Translator class
from
.utils
import
make_position_mat
,
get_position_slicing
,
generate_dummy_main_parms
from
..be_hdf_utils
import
maxReadPixels
...
...
pycroscopy/io/translators/beps_ndf.py
View file @
568bdf88
...
...
@@ -15,7 +15,7 @@ import numpy as np
import
xlrd
as
xlreader
# To read the UDVS spreadsheet
from
scipy.io.matlab
import
loadmat
# To load parameters stored in Matlab .mat file
from
io.translators.utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
parmsToDict
,
generatePlotGroups
,
normalizeBEresponse
,
\
from
io.translators.
df_
utils.be_utils
import
trimUDVS
,
getSpectroscopicParmLabel
,
parmsToDict
,
generatePlotGroups
,
normalizeBEresponse
,
\
createSpecVals
,
nf32
from
.translator
import
Translator
from
.utils
import
make_position_mat
,
generate_dummy_main_parms
...
...
pycroscopy/io/translators/utils/__init__.py
→
pycroscopy/io/translators/
df_
utils/__init__.py
View file @
568bdf88
File moved
pycroscopy/io/translators/utils/be_utils.py
→
pycroscopy/io/translators/
df_
utils/be_utils.py
View file @
568bdf88
File moved
pycroscopy/io/translators/utils/dm3_image_utils.py
→
pycroscopy/io/translators/
df_
utils/dm3_image_utils.py
View file @
568bdf88
...
...
@@ -15,7 +15,7 @@ from __future__ import division, print_function, absolute_import
import
numpy
as
np
from
io.translators.utils.parse_dm3
import
*
from
io.translators.
df_
utils.parse_dm3
import
*
structarray_to_np_map
=
{
(
'd'
,
'd'
):
np
.
complex128
,
...
...
pycroscopy/io/translators/utils/gmode_utils.py
→
pycroscopy/io/translators/
df_
utils/gmode_utils.py
View file @
568bdf88
File moved
pycroscopy/io/translators/utils/io_image.py
→
pycroscopy/io/translators/
df_
utils/io_image.py
View file @
568bdf88
...
...
@@ -12,8 +12,8 @@ import os
import
numpy
as
np
from
skimage.io
import
imread
from
io.translators.utils
import
dm4reader
from
io.translators.utils.dm3_image_utils
import
parse_dm_header
,
imagedatadict_to_ndarray
from
io.translators.
df_
utils
import
dm4reader
from
io.translators.
df_
utils.dm3_image_utils
import
parse_dm_header
,
imagedatadict_to_ndarray
def
read_image
(
image_path
,
*
args
,
**
kwargs
):
...
...
pycroscopy/io/translators/utils/parse_dm3.py
→
pycroscopy/io/translators/
df_
utils/parse_dm3.py
View file @
568bdf88
File moved
pycroscopy/io/translators/forc_iv.py
View file @
568bdf88
...
...
@@ -13,10 +13,8 @@ import numpy as np # For array operations
from
scipy.io
import
loadmat
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
linkRefs
from
..io_hdf5
import
ioHDF5
# Now the translator is responsible for writing the data.
from
..microdata
import
MicroDataGroup
,
MicroDataset
# building blocks for defining hierarchical storage in the H5 file
from
.utils
import
build_ind_val_dsets
from
..microdata
import
MicroDataset
# building blocks for defining hierarchical storage in the H5 file
class
ForcIVTranslator
(
Translator
):
...
...
@@ -93,7 +91,6 @@ class ForcIVTranslator(Translator):
[
ds_pos_ind
,
ds_pos_val
,
ds_spec_inds
,
ds_spec_vals
],
parm_dict
)
def
_read_parms
(
self
,
raw_data_file_handle
):
"""
Copies experimental parameters from the .mat file to a dictionary
...
...
pycroscopy/io/translators/general_dynamic_mode.py
View file @
568bdf88
...
...
@@ -12,7 +12,7 @@ from os import path, remove # File Path formatting
import
numpy
as
np
# For array operations
from
scipy.io.matlab
import
loadmat
# To load parameters stored in Matlab .mat file
from
io.translators.utils.gmode_utils
import
readGmodeParms
from
io.translators.
df_
utils.gmode_utils
import
readGmodeParms
from
.translator
import
Translator
# Because this class extends the abstract Translator class
from
.utils
import
make_position_mat
,
get_position_slicing
,
generate_dummy_main_parms
from
..hdf_utils
import
getH5DsetRefs
,
linkRefs
...
...
pycroscopy/io/translators/gmode_line.py
View file @
568bdf88
...
...
@@ -12,7 +12,7 @@ from warnings import warn
import
numpy
as
np
from
scipy.io.matlab
import
loadmat
# To load parameters stored in Matlab .mat file
from
io.translators.utils.be_utils
import
parmsToDict
from
io.translators.
df_
utils.be_utils
import
parmsToDict
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
linkRefs
...
...
pycroscopy/io/translators/image.py
View file @
568bdf88
...
...
@@ -11,7 +11,7 @@ import os
import
numpy
as
np
from
skimage.measure
import
block_reduce
from
io.translators.utils.io_image
import
read_image
from
io.translators.
df_
utils.io_image
import
read_image
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
calc_chunks
,
link_as_main
,
findDataset
...
...
pycroscopy/io/translators/ndata_translator.py
View file @
568bdf88
...
...
@@ -15,7 +15,7 @@ import numpy as np
from
skimage.measure
import
block_reduce
from
skimage.util
import
crop
from
io.translators.utils.io_image
import
unnest_parm_dicts
,
read_dm3
from
io.translators.
df_
utils.io_image
import
unnest_parm_dicts
,
read_dm3
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
make_position_mat
,
get_spectral_slicing
,
\
get_position_slicing
,
build_ind_val_dsets
...
...
pycroscopy/io/translators/oneview.py
View file @
568bdf88
...
...
@@ -13,8 +13,8 @@ import numpy as np
from
skimage.measure
import
block_reduce
from
skimage.util
import
crop
from
io.translators.utils
import
dm4reader
from
io.translators.utils.io_image
import
read_image
,
read_dm3
,
parse_dm4_parms
from
io.translators.
df_
utils
import
dm4reader
from
io.translators.
df_
utils.io_image
import
read_image
,
read_dm3
,
parse_dm4_parms
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
make_position_mat
,
get_spectral_slicing
,
\
get_position_slicing
,
build_ind_val_dsets
...
...
pycroscopy/io/translators/ptychography.py
View file @
568bdf88
...
...
@@ -12,7 +12,7 @@ import numpy as np
from
skimage.data
import
imread
from
skimage.measure
import
block_reduce
from
io.translators.utils.io_image
import
read_image
,
read_dm3
from
io.translators.
df_
utils.io_image
import
read_image
,
read_dm3
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
calc_chunks
,
link_as_main
...
...
pycroscopy/io/translators/time_series.py
View file @
568bdf88
...
...
@@ -11,7 +11,7 @@ import os
import
numpy
as
np
from
skimage.measure
import
block_reduce
from
io.translators.utils.io_image
import
read_image
,
read_dm3
from
io.translators.
df_
utils.io_image
import
read_image
,
read_dm3
from
.translator
import
Translator
from
.utils
import
generate_dummy_main_parms
,
build_ind_val_dsets
from
..hdf_utils
import
getH5DsetRefs
,
calc_chunks
,
link_as_main
...
...
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