updated bibliography with Zotero files

  	Title = {{Using Nanopublications to Detect and Explain Contradictory Research Claims}},

  	Year = 2021

}

 @inproceedings{Asif_Tiddi_Gray_2021, 

 title={Using Nanopublications to Detect and Explain Contradictory Research Claims}, 

 url={https://ieeexplore.ieee.org/abstract/document/9582393}, 

 DOI={10.1109/eScience51609.2021.00010}, 

 booktitle={2021 IEEE 17th International Conference on eScience (eScience)}, 

 author={Asif, Imran and Tiddi, Ilaria and Gray, Alasdair J. G.}, 

 year={2021}, 

 month=sept, 

 pages={1–10} 

 }

 @article{Baca, Murtha, 

 title={Introduction to Metadata}, 

 url={https://www.getty.edu/publications/intrometadata/}, 

 author={Baca, Murtha}

}

 @article{Budakoglu_Emekci_2025, 

 title={Unveiling the Power of Large Language Models: A Comparative Study of Retrieval-Augmented Generation, Fine-Tuning, and Their Synergistic Fusion for Enhanced Performance}, 

 volume={13}, 

 ISSN={2169-3536},

 url={https://ieeexplore.ieee.org/document/10887212}, 

 DOI={10.1109/ACCESS.2025.3542334}, journal={IEEE Access}, 

 author={Budakoglu, Gülsüm and Emekci, Hakan}, 

 year={2025}, 

 pages={30936–30951} 

 }

 @article{Ciccarese_Wu_Wong_Ocana_Kinoshita_Ruttenberg_Clark_2008, series={Semantic Mashup of Biomedical Data}, title={The SWAN biomedical discourse ontology}, volume={41}, ISSN={1532-0464}, url={https://www.sciencedirect.com/science/article/pii/S1532046408000580}, DOI={10.1016/j.jbi.2008.04.010}, number={5}, journal={Journal of Biomedical Informatics}, author={Ciccarese, Paolo and Wu, Elizabeth and Wong, Gwen and Ocana, Marco and Kinoshita, June and Ruttenberg, Alan and Clark, Tim}, year={2008}, month=oct, pages={739–751}, collection={Semantic Mashup of Biomedical Data} }

 @article{Gao_Xiong_Gao_Jia_Pan_Bi_Dai_Sun_Guo_Wang_et al._2024, title={Retrieval-Augmented Generation for Large Language Models: A Survey}, url={http://arxiv.org/abs/2312.10997}, note={arXiv:2312.10997 [cs]}, number={arXiv:2312.10997}, publisher={arXiv}, author={Gao, Yunfan and Xiong, Yun and Gao, Xinyu and Jia, Kangxiang and Pan, Jinliu and Bi, Yuxi and Dai, Yi and Sun, Jiawei and Guo, Qianyu and Wang, Meng and Wang, Haofen}, year={2024}, month=jan, language={en} }

 @article{Grimes_Bauch_Ioannidis_2018, title={Modelling science trustworthiness under publish or perish pressure}, volume={5}, url={https://royalsocietypublishing.org/doi/10.1098/rsos.171511}, DOI={10.1098/rsos.171511}, number={1}, journal={Royal Society Open Science}, publisher={Royal Society}, author={Grimes, David Robert and Bauch, Chris T. and Ioannidis, John P. A.}, year={2018}, month=jan, pages={171511} }

 @article{Groth_Gibson_Velterop_2010, title={The anatomy of a nanopublication}, volume={30}, ISSN={0167-5265}, url={https://doi.org/10.3233/ISU-2010-0613}, DOI={10.3233/ISU-2010-0613}, number={1–2}, journal={Information Services and Use}, publisher={SAGE Publications}, author={Groth, Paul and Gibson, Andrew and Velterop, Jan}, year={2010}, month=feb, pages={51–56}, language={EN} }

 @article{Hemmat_Vadaei_Heydari_Fatemi_2024, title={Leveraging Retrieval-Augmented Generation for University Knowledge Retrieval}, url={http://arxiv.org/abs/2411.06237}, note={arXiv:2411.06237 [cs]}, number={arXiv:2411.06237}, publisher={arXiv}, author={Hemmat, Arshia and Vadaei, Kianoosh and Heydari, Mohammad Hassan and Fatemi, Afsaneh}, year={2024}, month=nov, language={en} }

 @article{Hu_Lu_2024, title={RAG and RAU: A Survey on Retrieval-Augmented Language Model in Natural Language Processing}, url={http://arxiv.org/abs/2404.19543}, note={arXiv:2404.19543 [cs]}, number={arXiv:2404.19543}, publisher={arXiv}, author={Hu, Yucheng and Lu, Yuxing}, year={2024}, month=apr, language={en} }

 @article{Krishna_Krishna_Mohananey_Schwarcz_Stambler_Upadhyay_Faruqui_2024, title={Fact, Fetch, and Reason: A Unified Evaluation of Retrieval-Augmented Generation}, url={http://arxiv.org/abs/2409.12941}, note={arXiv:2409.12941 [cs]}, number={arXiv:2409.12941}, publisher={arXiv}, author={Krishna, Satyapriya and Krishna, Kalpesh and Mohananey, Anhad and Schwarcz, Steven and Stambler, Adam and Upadhyay, Shyam and Faruqui, Manaal}, year={2024}, month=sept, language={en} }

 @inbook{Kuhn_Barbano_Nagy_Krauthammer_2013, address={Berlin, Heidelberg}, series={Lecture Notes in Computer Science}, title={Broadening the Scope of Nanopublications}, volume={7882}, ISBN={978-3-642-38287-1}, url={http://link.springer.com/10.1007/978-3-642-38288-8_33}, DOI={10.1007/978-3-642-38288-8_33}, booktitle={The Semantic Web: Semantics and Big Data}, publisher={Springer Berlin Heidelberg}, author={Kuhn, Tobias and Barbano, Paolo Emilio and Nagy, Mate Levente and Krauthammer, Michael}, editor={Cimiano, Philipp and Corcho, Oscar and Presutti, Valentina and Hollink, Laura and Rudolph, Sebastian}, year={2013}, pages={487–501}, collection={Lecture Notes in Computer Science}, language={en} }

 @article{Lewis_Perez_Piktus_Petroni_Karpukhin_Goyal_Kuttler_Lewis_Yih_Rocktäschel_et al._2020, title={Retrieval-Augmented Generation for Knowledge-Intensive NLP Tasks}, url={https://www.semanticscholar.org/paper/Retrieval-Augmented-Generation-for-NLP-Tasks-Lewis-Perez/58ed1fbaabe027345f7bb3a6312d41c5aac63e22}, journal={ArXiv}, author={Lewis, Patrick and Perez, Ethan and Piktus, Aleksandara and Petroni, Fabio and Karpukhin, Vladimir and Goyal, Naman and Kuttler, Heinrich and Lewis, M. and Yih, Wen-tau and Rocktäschel, Tim and Riedel, Sebastian and Kiela, Douwe}, year={2020}, month=may }

 @article{Li_Stenzel_Eickhoff_Bahrainian_2025, title={Enhancing Retrieval-Augmented Generation: A Study of Best Practices}, url={http://arxiv.org/abs/2501.07391}, DOI={10.48550/arXiv.2501.07391}, note={arXiv:2501.07391 [cs]}, number={arXiv:2501.07391}, publisher={arXiv}, author={Li, Siran and Stenzel, Linus and Eickhoff, Carsten and Bahrainian, Seyed Ali}, year={2025}, month=jan, language={en} }

 @article{Liu_Li_Zhang_Wang_He_Hong_Liu_Zhang_Song_Zhu_et al._2025, title={Advances and Challenges in Foundation Agents: From Brain-Inspired Intelligence to Evolutionary, Collaborative, and Safe Systems}, url={http://arxiv.org/abs/2504.01990}, DOI={10.48550/arXiv.2504.01990}, note={arXiv:2504.01990 [cs]}, number={arXiv:2504.01990}, publisher={arXiv}, author={Liu, Bang and Li, Xinfeng and Zhang, Jiayi and Wang, Jinlin and He, Tanjin and Hong, Sirui and Liu, Hongzhang and Zhang, Shaokun and Song, Kaitao and Zhu, Kunlun and Cheng, Yuheng and Wang, Suyuchen and Wang, Xiaoqiang and Luo, Yuyu and Jin, Haibo and Zhang, Peiyan and Liu, Ollie and Chen, Jiaqi and Zhang, Huan and Yu, Zhaoyang and Shi, Haochen and Li, Boyan and Wu, Dekun and Teng, Fengwei and Jia, Xiaojun and Xu, Jiawei and Xiang, Jinyu and Lin, Yizhang and Liu, Tianming and Liu, Tongliang and Su, Yu and Sun, Huan and Berseth, Glen and Nie, Jianyun and Foster, Ian and Ward, Logan and Wu, Qingyun and Gu, Yu and Zhuge, Mingchen and Tang, Xiangru and Wang, Haohan and You, Jiaxuan and Wang, Chi and Pei, Jian and Yang, Qiang and Qi, Xiaoliang and Wu, Chenglin}, year={2025}, month=mar, language={en} }

 @inproceedings{Patel_Surti_Goel_Patel_2024, title={A Comparative Analysis of Large Language Models with Retrieval-Augmented Generation based Question Answering System}, ISSN={2768-0673}, url={https://ieeexplore.ieee.org/document/10714814/?arnumber=10714814}, DOI={10.1109/I-SMAC61858.2024.10714814}, booktitle={2024 8th International Conference on I-SMAC (IoT in Social, Mobile, Analytics and Cloud) (I-SMAC)}, author={Patel, Hetul Niteshbhai and Surti, Azara and Goel, Parth and Patel, Bankim}, year={2024}, month=oct, pages={792–798} }

 @article{Shao_Zope_Jiang_Pei_Nguyen_Brynjolfsson_Yang_2025, title={Future of Work with AI Agents: Auditing Automation and Augmentation Potential across the U.S. Workforce}, url={http://arxiv.org/abs/2506.06576}, DOI={10.48550/arXiv.2506.06576}, note={arXiv:2506.06576 [cs]}, number={arXiv:2506.06576}, publisher={arXiv}, author={Shao, Yijia and Zope, Humishka and Jiang, Yucheng and Pei, Jiaxin and Nguyen, David and Brynjolfsson, Erik and Yang, Diyi}, year={2025}, month=june }

 @article{Tan_Baksi_Bjerregaard_Elangovan_Gopalakrishnan_Hric_Joumaa_Li_Rabbani_Venkatesan_et al._2025, title={Digital evolution: Novo Nordisk’s shift to ontology-based data management}, volume={16}, ISSN={2041-1480}, url={https://doi.org/10.1186/s13326-025-00327-4}, DOI={10.1186/s13326-025-00327-4}, number={1}, journal={Journal of Biomedical Semantics}, author={Tan, Shawn Zheng Kai and Baksi, Shounak and Bjerregaard, Thomas Gade and Elangovan, Preethi and Gopalakrishnan, Thrishna Kuttikattu and Hric, Darko and Joumaa, Joffrey and Li, Beidi and Rabbani, Kashif and Venkatesan, Santhosh Kannan and Valdez, Joshua Daniel and Kuriakose, Saritha Vettikunnel}, year={2025}, month=mar, pages={6} }

 @article{Wu_Richard_Verhey_Castro_Cecconi_Juty_2023, title={An Analysis of Crosswalks from Research Data Schemas to Schema.org}, volume={5}, ISSN={2641-435X}, url={https://doi.org/10.1162/dint_a_00186}, DOI={10.1162/dint_a_00186}, number={1}, journal={Data Intelligence}, author={Wu, Mingfang and Richard, Stephen M. and Verhey, Chantelle and Castro, Leyla Jael and Cecconi, Baptiste and Juty, Nick}, year={2023}, month=mar, pages={100–121} }

 @article{Xia_Zhou_Shi_Chen_Huang_2024, title={Improving Retrieval Augmented Language Model with Self-Reasoning}, url={http://arxiv.org/abs/2407.19813}, note={arXiv:2407.19813 [cs]}, number={arXiv:2407.19813}, publisher={arXiv}, author={Xia, Yuan and Zhou, Jingbo and Shi, Zhenhui and Chen, Jun and Huang, Haifeng}, year={2024}, month=july, language={en} }

 @article{Yang_Chai_Song_Qi_Wen_Li_Liao_Hu_Lin_Chang_et al._2025, title={A Survey of AI Agent Protocols}, url={http://arxiv.org/abs/2504.16736}, DOI={10.48550/arXiv.2504.16736}, note={arXiv:2504.16736 [cs]}, number={arXiv:2504.16736}, publisher={arXiv}, author={Yang, Yingxuan and Chai, Huacan and Song, Yuanyi and Qi, Siyuan and Wen, Muning and Li, Ning and Liao, Junwei and Hu, Haoyi and Lin, Jianghao and Chang, Gaowei and Liu, Weiwen and Wen, Ying and Yu, Yong and Zhang, Weinan}, year={2025}, month=apr }