cleaning up pybind11 tpls

Signed-off-by: Alex McCaskey <mccaskeyaj@ornl.gov>

tpls/pybind11/.appveyor.yml

-version: 1.0.{build}
-image:
-- Visual Studio 2017
-- Visual Studio 2015
-test: off
-build:
-  parallel: true
-platform:
-- x64
-- x86
-environment:
-  matrix:
-  - PYTHON: 36
-    CPP: 14
-    CONFIG: Debug
-  - PYTHON: 27
-    CPP: 14
-    CONFIG: Debug
-  - CONDA: 36
-    CPP: latest
-    CONFIG: Release
-matrix:
-  exclude:
-    - image: Visual Studio 2015
-      platform: x86
-    - image: Visual Studio 2015
-      CPP: latest
-    - image: Visual Studio 2017
-      CPP: latest
-      platform: x86
-install:
-- ps: |
-    if ($env:PLATFORM -eq "x64") { $env:CMAKE_ARCH = "x64" }
-    if ($env:APPVEYOR_JOB_NAME -like "*Visual Studio 2017*") {
-      $env:CMAKE_GENERATOR = "Visual Studio 15 2017"
-      $env:CMAKE_INCLUDE_PATH = "C:\Libraries\boost_1_64_0"
-    } else {
-      $env:CMAKE_GENERATOR = "Visual Studio 14 2015"
-    }
-    if ($env:PYTHON) {
-      if ($env:PLATFORM -eq "x64") { $env:PYTHON = "$env:PYTHON-x64" }
-      $env:PATH = "C:\Python$env:PYTHON\;C:\Python$env:PYTHON\Scripts\;$env:PATH"
-      pip install --disable-pip-version-check --user --upgrade pip wheel
-      pip install pytest numpy
-    } elseif ($env:CONDA) {
-      if ($env:CONDA -eq "27") { $env:CONDA = "" }
-      if ($env:PLATFORM -eq "x64") { $env:CONDA = "$env:CONDA-x64" }
-      $env:PATH = "C:\Miniconda$env:CONDA\;C:\Miniconda$env:CONDA\Scripts\;$env:PATH"
-      $env:PYTHONHOME = "C:\Miniconda$env:CONDA"
-      conda install -y -q pytest numpy scipy
-    }
-- ps: |
-    Start-FileDownload 'http://bitbucket.org/eigen/eigen/get/3.3.3.zip'
-    7z x 3.3.3.zip -y > $null
-    $env:CMAKE_INCLUDE_PATH = "eigen-eigen-67e894c6cd8f;$env:CMAKE_INCLUDE_PATH"
-build_script:
-- cmake -G "%CMAKE_GENERATOR%" -A "%CMAKE_ARCH%"
-    -DPYBIND11_CPP_STANDARD=/std:c++%CPP%
-    -DPYBIND11_WERROR=ON
-    -DDOWNLOAD_CATCH=ON
-    -DCMAKE_SUPPRESS_REGENERATION=1
-- set MSBuildLogger="C:\Program Files\AppVeyor\BuildAgent\Appveyor.MSBuildLogger.dll"
-- cmake --build . --config %CONFIG% --target pytest -- /m /v:m /logger:%MSBuildLogger%
-- cmake --build . --config %CONFIG% --target cpptest -- /m /v:m /logger:%MSBuildLogger%
-- if "%CPP%"=="latest" (cmake --build . --config %CONFIG% --target test_cmake_build -- /m /v:m /logger:%MSBuildLogger%)
-on_failure: if exist "tests\test_cmake_build" type tests\test_cmake_build\*.log*

tpls/pybind11/.gitignore

-CMakeCache.txt
-CMakeFiles
-Makefile
-cmake_install.cmake
-.DS_Store
-*.so
-*.pyd
-*.dll
-*.sln
-*.sdf
-*.opensdf
-*.vcxproj
-*.filters
-example.dir
-Win32
-x64
-Release
-Debug
-.vs
-CTestTestfile.cmake
-Testing
-autogen
-MANIFEST
-/.ninja_*
-/*.ninja
-/docs/.build
-*.py[co]
-*.egg-info
-*~
-.DS_Store
-/dist
-/build
-/cmake/
-.cache/
-sosize-*.txt
-pybind11Config*.cmake
-pybind11Targets.cmake

tpls/pybind11/.gitmodules

-[submodule "tools/clang"]
-	path = tools/clang
-	url = https://github.com/wjakob/clang-cindex-python3

tpls/pybind11/.readthedocs.yml

-python:
-  version: 3
-requirements_file: docs/requirements.txt

tpls/pybind11/.travis.yml

-language: cpp
-dist: trusty
-sudo: false
-matrix:
-  include:
-  - os: linux
-    env: PYTHON=2.7 CPP=11 GCC=4.8
-    addons:
-      apt:
-        packages: [cmake=2.\*, cmake-data=2.\*]
-  - os: linux
-    env: PYTHON=3.6 CPP=11 GCC=4.8
-    addons:
-      apt:
-        sources: [deadsnakes]
-        packages: [python3.6-dev python3.6-venv, cmake=2.\*, cmake-data=2.\*]
-  - sudo: true
-    services: docker
-    env: PYTHON=2.7 CPP=14 GCC=6
-  - sudo: true
-    services: docker
-    env: PYTHON=3.5 CPP=14 GCC=6 DEBUG=1
-  - sudo: true
-    services: docker
-    env: PYTHON=3.6 CPP=17 GCC=7
-  - os: linux
-    env: PYTHON=3.6 CPP=17 CLANG=5.0
-    addons:
-      apt:
-        sources: [deadsnakes, llvm-toolchain-trusty-5.0, ubuntu-toolchain-r-test]
-        packages: [python3.6-dev python3.6-venv clang-5.0 llvm-5.0-dev, lld-5.0]
-  - os: osx
-    osx_image: xcode7.3
-    env: PYTHON=2.7 CPP=14 CLANG
-  - os: osx
-    osx_image: xcode7.3
-    env: PYTHON=3.6 CPP=14 CLANG
-  # Test a PyPy 2.7 build
-  - os: linux
-    env: PYPY=5.8 PYTHON=2.7 CPP=11 GCC=4.8
-    addons:
-      apt:
-        packages: [libblas-dev, liblapack-dev, gfortran]
-  - sudo: true
-    services: docker
-    env: ARCH=i386 PYTHON=3.5 CPP=14 GCC=6
-  # This next one does a make install *before* testing, then builds the tests against the installed version:
-  - sudo: true
-    services: docker
-    env: PYTHON=3.5 CPP=14 CLANG=3.9 INSTALL=1
-    script:
-      - |
-        $SCRIPT_RUN_PREFIX sh -c "set -e
-        cmake ${CMAKE_EXTRA_ARGS} -DPYBIND11_INSTALL=1 -DPYBIND11_TEST=0
-        make install
-        cp -a tests /pybind11-tests
-        mkdir /build-tests && cd /build-tests
-        cmake ../pybind11-tests ${CMAKE_EXTRA_ARGS} -DPYBIND11_WERROR=ON
-        make pytest -j 2"
-  # A barebones build makes sure everything still works without optional deps (numpy/scipy/eigen)
-  # and also tests the automatic discovery functions in CMake (Python version, C++ standard).
-  - os: linux
-    env: BAREBONES PYTHON=3.5
-    install: $PY_CMD -m pip install --user --upgrade pytest
-  # Documentation build:
-  - os: linux
-    language: docs
-    env: DOCS STYLE LINT PIP
-    cache: false
-    install:
-    - export PATH="~/.local/bin:$PATH"
-    - $PY_CMD -m pip install --user --upgrade sphinx sphinx_rtd_theme breathe flake8 pep8-naming
-    - |
-      curl -fsSL ftp://ftp.stack.nl/pub/users/dimitri/doxygen-1.8.12.linux.bin.tar.gz | tar xz
-      export PATH="$PWD/doxygen-1.8.12/bin:$PATH"
-    script:
-    - $PY_CMD -m sphinx -W -b html docs docs/.build
-    - tools/check-style.sh
-    - flake8
-    - |
-      # Make sure setup.py distributes and installs all the headers
-      $PY_CMD setup.py sdist
-      $PY_CMD -m pip install --user -U ./dist/*
-      installed=$($PY_CMD -c "import pybind11; print(pybind11.get_include(True) + '/pybind11')")
-      diff -rq $installed ./include/pybind11
-cache:
-  directories:
-  - $HOME/.local/bin
-  - $HOME/.local/lib
-  - $HOME/.local/include
-  - $HOME/Library/Python
-before_install:
-- |
-  # Configure build variables
-  if [ "$TRAVIS_OS_NAME" = "linux" ]; then
-    if [ -n "$CLANG" ]; then
-      export CXX=clang++-$CLANG CC=clang-$CLANG
-      COMPILER_PACKAGES="clang-$CLANG llvm-$CLANG-dev"
-    else
-      if [ -z "$GCC" ]; then GCC=4.8
-      else COMPILER_PACKAGES=g++-$GCC
-      fi
-      export CXX=g++-$GCC CC=gcc-$GCC
-    fi
-    if [ "$GCC" = "6" ] || [ "$CLANG" = "3.9" ]; then DOCKER=${ARCH:+$ARCH/}debian:stretch
-    elif [ "$GCC" = "7" ]; then DOCKER=debian:buster
-    fi
-  elif [ "$TRAVIS_OS_NAME" = "osx" ]; then
-    export CXX=clang++ CC=clang;
-  fi
-  if [ -n "$CPP" ]; then CPP=-std=c++$CPP; fi
-  if [ "${PYTHON:0:1}" = "3" ]; then PY=3; fi
-  if [ -n "$DEBUG" ]; then CMAKE_EXTRA_ARGS="${CMAKE_EXTRA_ARGS} -DCMAKE_BUILD_TYPE=Debug"; fi
-- |
-  # Initialize environment
-  set -e
-  if [ -n "$DOCKER" ]; then
-    docker pull $DOCKER
-
-    containerid=$(docker run --detach --tty \
-      --volume="$PWD":/pybind11 --workdir=/pybind11 \
-      --env="CC=$CC" --env="CXX=$CXX" --env="DEBIAN_FRONTEND=$DEBIAN_FRONTEND" \
-      --env=GCC_COLORS=\  \
-      $DOCKER)
-    SCRIPT_RUN_PREFIX="docker exec --tty $containerid"
-    $SCRIPT_RUN_PREFIX sh -c 'for s in 0 15; do sleep $s; apt-get update && apt-get -qy dist-upgrade && break; done'
-  else
-    if [ "$PYPY" = "5.8" ]; then
-      curl -fSL https://bitbucket.org/pypy/pypy/downloads/pypy2-v5.8.0-linux64.tar.bz2 | tar xj
-      PY_CMD=$(echo `pwd`/pypy2-v5.8.0-linux64/bin/pypy)
-      CMAKE_EXTRA_ARGS="${CMAKE_EXTRA_ARGS} -DPYTHON_EXECUTABLE:FILEPATH=$PY_CMD"
-    else
-      PY_CMD=python$PYTHON
-      if [ "$TRAVIS_OS_NAME" = "osx" ]; then
-        if [ "$PY" = "3" ]; then
-          brew update; brew install python$PY;
-        else
-          curl -fsSL https://bootstrap.pypa.io/get-pip.py | $PY_CMD - --user
-        fi
-      fi
-    fi
-    if [ "$PY" = 3 ] || [ -n "$PYPY" ]; then
-      $PY_CMD -m ensurepip --user
-    fi
-    $PY_CMD -m pip install --user --upgrade pip wheel
-  fi
-  set +e
-install:
-- |
-  # Install dependencies
-  set -e
-  if [ -n "$DOCKER" ]; then
-    if [ -n "$DEBUG" ]; then
-      PY_DEBUG="python$PYTHON-dbg python$PY-scipy-dbg"
-      CMAKE_EXTRA_ARGS="${CMAKE_EXTRA_ARGS} -DPYTHON_EXECUTABLE=/usr/bin/python${PYTHON}dm"
-    fi
-    $SCRIPT_RUN_PREFIX sh -c "for s in 0 15; do sleep \$s; \
-      apt-get -qy --no-install-recommends install \
-        $PY_DEBUG python$PYTHON-dev python$PY-pytest python$PY-scipy \
-        libeigen3-dev libboost-dev cmake make ${COMPILER_PACKAGES} && break; done"
-  else
-
-    if [ "$CLANG" = "5.0" ]; then
-      if ! [ -d ~/.local/include/c++/v1 ]; then
-        # Neither debian nor llvm provide a libc++ 5.0 deb; luckily it's fairly quick
-        # to build, install (and cache), so do it ourselves:
-        git clone --depth=1 https://github.com/llvm-mirror/llvm.git llvm-source
-        git clone https://github.com/llvm-mirror/libcxx.git llvm-source/projects/libcxx -b release_50
-        git clone https://github.com/llvm-mirror/libcxxabi.git llvm-source/projects/libcxxabi -b release_50
-        mkdir llvm-build && cd llvm-build
-        # Building llvm requires a newer cmake than is provided by the trusty container:
-        CMAKE=cmake-3.8.0-Linux-x86_64
-        curl https://cmake.org/files/v3.8/$CMAKE.tar.gz | tar xz
-        ./$CMAKE/bin/cmake -DCMAKE_BUILD_TYPE=Release -DCMAKE_INSTALL_PREFIX=~/.local ../llvm-source
-        make -j2 install-cxxabi install-cxx
-        cp -a include/c++/v1/*cxxabi*.h ~/.local/include/c++/v1
-        cd ..
-      fi
-      export CXXFLAGS="-isystem $HOME/.local/include/c++/v1 -stdlib=libc++"
-      export LDFLAGS="-L$HOME/.local/lib -fuse-ld=lld-$CLANG"
-      export LD_LIBRARY_PATH="$HOME/.local/lib${LD_LIBRARY_PATH:+:$LD_LIBRARY_PATH}"
-      if [ "$CPP" = "-std=c++17" ]; then CPP="-std=c++1z"; fi
-    fi
-
-    export NPY_NUM_BUILD_JOBS=2
-    echo "Installing pytest, numpy, scipy..."
-    ${PYPY:+travis_wait 30} $PY_CMD -m pip install --user --upgrade pytest numpy scipy \
-        ${PYPY:+--extra-index-url https://imaginary.ca/trusty-pypi}
-    echo "done."
-
-    wget -q -O eigen.tar.gz https://bitbucket.org/eigen/eigen/get/3.3.3.tar.gz
-    tar xzf eigen.tar.gz
-    export CMAKE_INCLUDE_PATH="${CMAKE_INCLUDE_PATH:+:}$PWD/eigen-eigen-67e894c6cd8f"
-  fi
-  set +e
-script:
-- $SCRIPT_RUN_PREFIX cmake ${CMAKE_EXTRA_ARGS}
-    -DPYBIND11_PYTHON_VERSION=$PYTHON
-    -DPYBIND11_CPP_STANDARD=$CPP
-    -DPYBIND11_WERROR=${WERROR:-ON}
-    -DDOWNLOAD_CATCH=ON
-- $SCRIPT_RUN_PREFIX make pytest -j 2
-- $SCRIPT_RUN_PREFIX make cpptest -j 2
-- $SCRIPT_RUN_PREFIX make test_cmake_build
-after_failure: cat tests/test_cmake_build/*.log*
-after_script:
-- if [ -n "$DOCKER" ]; then docker stop "$containerid"; docker rm "$containerid"; fi