/* * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. */ #include <cstdint> #include <cstring> #include <iostream> #include <stdexcept> #include <adios2.h> #include <hdf5.h> #include <gtest/gtest.h> #include "../SmallTestData.h" class HDF5WriteReadTest : public ::testing::Test { public: HDF5WriteReadTest() = default; SmallTestData m_TestData; }; //****************************************************************************** // 1D 1x8 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read1D8) { std::string fname = "ADIOS2HDF5WriteHDF5Read1D8.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{8}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{8}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{8}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{8}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{8}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{8}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{8}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{8}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{8}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{8}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 { } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read1D8) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read1D8.h5"; // Not yet implemented since read API is not ready } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read1D8) { std::string fname = "HDF5WriteADIOS2HDF5Read1D8.h5"; // Not yet implemented since read API is not ready } //****************************************************************************** // 2D 2x4 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) { std::string fname = "ADIOS2HDF5WriteHDF5Read2D2x4Test.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{2, 4}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{2, 4}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{2, 4}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{2, 4}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{2, 4}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{2, 4}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{2, 4}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{2, 4}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{2, 4}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{2, 4}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 { } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read2D2x4) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read2D2x4Test.h5"; // Not yet implemented since read API is not ready } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read2D2x4) { std::string fname = "HDF5WriteADIOS2HDF5Read2D2x4Test.h5"; // Not yet implemented since read API is not ready } //****************************************************************************** // 2D 4x2 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) { std::string fname = "ADIOS2HDF5WriteHDF5Read2D4x2Test.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{4, 2}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{4, 2}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{4, 2}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{4, 2}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{4, 2}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{4, 2}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{4, 2}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{4, 2}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{4, 2}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{4, 2}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 { } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read2D4x2) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read2D4x2Test.h5"; // Not yet implemented since read API is not ready } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read2D4x2) { std::string fname = "HDF5WriteADIOS2HDF5Read2D4x2Test.h5"; // Not yet implemented since read API is not ready } //****************************************************************************** // main //****************************************************************************** int main(int argc, char **argv) { #ifdef ADIOS2_HAVE_MPI MPI_Init(nullptr, nullptr); #endif ::testing::InitGoogleTest(&argc, argv); int result = RUN_ALL_TESTS(); #ifdef ADIOS2_HAVE_MPI MPI_Finalize(); #endif return result; }