/* * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. */ #include <cstdint> #include <cstring> #include <iostream> #include <stdexcept> #include <adios2.h> #include <hdf5.h> #include <gtest/gtest.h> #include "../SmallTestData.h" class HDF5WriteReadTest : public ::testing::Test { public: HDF5WriteReadTest() = default; SmallTestData m_TestData; }; class HDF5Direct { public: /** * Constructor for HDF5 file * @param file name */ HDF5Direct(const std::string name, MPI_Comm m_MPIComm); bool isValid(); void H5_Close(); void H5_Advance(); void Read(const std::string name, void *data_array, std::vector<int> &); hid_t m_Plist_id, m_File_id; hid_t m_Group_id; // hid_t DefH5T_COMPLEX_DOUBLE; // hid_t DefH5T_COMPLEX_FLOAT; // hid_t DefH5T_COMPLEX_LongDOUBLE; int m_CurrentTimeStep; private: int m_Total_timestep; }; HDF5Direct::HDF5Direct(const std::string name, MPI_Comm m_MPIComm) : m_Total_timestep(0), m_CurrentTimeStep(0) { // m_Plist_id = H5Pcreate(H5P_FILE_ACCESS); #ifdef ADIOS2_HAVE_MPI H5Pset_fapl_mpio(m_Plist_id, m_MPIComm, MPI_INFO_NULL); #endif std::string ts0 = "/TimeStep0"; { // read a file collectively m_File_id = H5Fopen(name.c_str(), H5F_ACC_RDONLY, H5P_DEFAULT); if (m_File_id >= 0) { m_Group_id = H5Gopen(m_File_id, ts0.c_str(), H5P_DEFAULT); } } H5Pclose(m_Plist_id); hid_t attr = H5Aopen(m_File_id, "NumTimeSteps", H5P_DEFAULT); H5Aread(attr, H5T_NATIVE_UINT, &m_Total_timestep); H5Aclose(attr); } bool HDF5Direct::isValid() { return (m_File_id >= 0); } void HDF5Direct::H5_Close() { if (m_Group_id >= 0) { H5Gclose(m_Group_id); } H5Fclose(m_File_id); } void HDF5Direct::H5_Advance() { m_CurrentTimeStep++; if (m_CurrentTimeStep > 0) { H5Gclose(m_Group_id); m_Group_id = -1; } std::string tsname = "/TimeStep"; tsname.append(std::to_string(m_CurrentTimeStep)); int totalts = m_Total_timestep; { if ((totalts > 0) && (totalts <= m_CurrentTimeStep)) { return; } // std::cout<<" ... current group "<<tsname.c_str()<<std::endl; m_Group_id = H5Gopen(m_File_id, tsname.c_str(), H5P_DEFAULT); } } void HDF5Direct::Read(const std::string name, void *data_array, std::vector<int> &gdims) { hid_t datasetID = H5Dopen(m_Group_id, name.c_str(), H5P_DEFAULT); if (datasetID < 0) { return; } hid_t filespace = H5Dget_space(datasetID); if (filespace < 0) { return; } const int ndims = H5Sget_simple_extent_ndims(filespace); hsize_t dims[ndims]; H5Sget_simple_extent_dims(filespace, dims, NULL); gdims.clear(); for (int i = 0; i < ndims; i++) { gdims.push_back(dims[i]); } hid_t h5type = H5Dget_type(datasetID); hid_t ret = H5Dread(datasetID, h5type, H5S_ALL, H5S_ALL, H5P_DEFAULT, data_array); H5Sclose(filespace); H5Dclose(datasetID); } //****************************************************************************** // 1D 1x8 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read1D8) { std::string fname = "ADIOS2HDF5WriteHDF5Read1D8.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // moved up // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{8}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{8}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{8}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{8}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{8}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{8}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{8}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{8}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{8}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{8}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 #ifdef ADIOS2_HAVE_MPI // Read everything from rank 0 int rank; MPI_Comm_rank(MPI_COMM_WORLD, &rank); if (rank == 0) #endif { HDF5Direct hdf5Reader(fname, MPI_COMM_WORLD); ASSERT_TRUE(hdf5Reader.isValid()); std::array<char, 8> I8; std::array<int16_t, 8> I16; std::array<int32_t, 8> I32; std::array<int64_t, 8> I64; std::array<unsigned char, 8> U8; std::array<uint16_t, 8> U16; std::array<uint32_t, 8> U32; std::array<uint64_t, 8> U64; std::array<float, 8> R32; std::array<double, 8> R64; // Read stuff for (size_t t = 0; t < 3; ++t) { std::vector<int> gDims; hdf5Reader.Read("i8", I8.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("i16", I16.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("i32", I32.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("i64", I64.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("u8", U8.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("u16", U16.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("u32", U32.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("u64", U64.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("r32", R32.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); hdf5Reader.Read("r64", R64.data(), gDims); ASSERT_EQ(gDims.size(), 1); ASSERT_EQ(gDims[0], 8); /* // Read the current step hdf5Reader.ReadMe(var_i8, I8.data(), H5T_NATIVE_CHAR); hdf5Reader.ReadMe(var_i16, I16.data(), H5T_NATIVE_SHORT); hdf5Reader.ReadMe(var_i32, I32.data(), H5T_NATIVE_INT); hdf5Reader.ReadMe(var_i64, I64.data(), H5T_NATIVE_LONG); hdf5Reader.ReadMe(var_u8, U8.data(), H5T_NATIVE_UCHAR); hdf5Reader.ReadMe(var_u16, U16.data(), H5T_NATIVE_USHORT); hdf5Reader.ReadMe(var_u32, U32.data(), H5T_NATIVE_UINT); hdf5Reader.ReadMe(var_u64, U64.data(), H5T_NATIVE_ULONG); hdf5Reader.ReadMe(var_r32, R32.data(), H5T_NATIVE_FLOAT); hdf5Reader.ReadMe(var_r64, R64.data(), H5T_NATIVE_DOUBLE); // Check the variables exist ASSERT_EQ(var_i8.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_i8.m_GlobalDimensions[0], 8); ASSERT_EQ(var_i16.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_i16.m_GlobalDimensions[0], 8); ASSERT_EQ(var_i32.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_i32.m_GlobalDimensions[0], 8); ASSERT_EQ(var_i64.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_i64.m_GlobalDimensions[0], 8); ASSERT_EQ(var_u8.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_u8.m_GlobalDimensions[0], 8); ASSERT_EQ(var_u16.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_u16.m_GlobalDimensions[0], 8); ASSERT_EQ(var_u32.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_u32.m_GlobalDimensions[0], 8); ASSERT_EQ(var_u64.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_u64.m_GlobalDimensions[0], 8); ASSERT_EQ(var_r32.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_r32.m_GlobalDimensions[0], 8); ASSERT_EQ(var_r64.m_GlobalDimensions.size(), 1); ASSERT_EQ(var_r64.m_GlobalDimensions[0], 8); */ // Check if it's correct for (size_t i = 0; i < 8; ++i) { std::stringstream ss; ss << "t=" << t << " i=" << i; std::string msg = ss.str(); EXPECT_EQ(I8[i], m_TestData.I8[i + t]) << msg; EXPECT_EQ(I16[i], m_TestData.I16[i + t]) << msg; EXPECT_EQ(I32[i], m_TestData.I32[i + t]) << msg; EXPECT_EQ(I64[i], m_TestData.I64[i + t]) << msg; EXPECT_EQ(U8[i], m_TestData.U8[i + t]) << msg; EXPECT_EQ(U16[i], m_TestData.U16[i + t]) << msg; EXPECT_EQ(U32[i], m_TestData.U32[i + t]) << msg; EXPECT_EQ(U64[i], m_TestData.U64[i + t]) << msg; EXPECT_EQ(R32[i], m_TestData.R32[i + t]) << msg; EXPECT_EQ(R64[i], m_TestData.R64[i + t]) << msg; } hdf5Reader.H5_Advance(); } // Cleanup file hdf5Reader.H5_Close(); } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read1D8) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read1D8.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read1D8) { std::string fname = "HDF5WriteADIOS2HDF5Read1D8.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } //****************************************************************************** // 2D 2x4 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D2x4) { std::string fname = "ADIOS2HDF5WriteHDF5Read2D2x4Test.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{2, 4}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{2, 4}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{2, 4}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{2, 4}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{2, 4}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{2, 4}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{2, 4}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{2, 4}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{2, 4}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{2, 4}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 #ifdef ADIOS2_HAVE_MPI // Read everything from rank 0 int rank; MPI_Comm_rank(MPI_COMM_WORLD, &rank); if (rank == 0) #endif { HDF5Direct hdf5Reader(fname, MPI_COMM_WORLD); ASSERT_TRUE(hdf5Reader.isValid()); std::array<char, 8> I8; std::array<int16_t, 8> I16; std::array<int32_t, 8> I32; std::array<int64_t, 8> I64; std::array<unsigned char, 8> U8; std::array<uint16_t, 8> U16; std::array<uint32_t, 8> U32; std::array<uint64_t, 8> U64; std::array<float, 8> R32; std::array<double, 8> R64; // Read stuff for (size_t t = 0; t < 3; ++t) { std::vector<int> gDims; hdf5Reader.Read("i8", I8.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("i16", I16.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("i32", I32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("i64", I64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("u8", U8.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("u16", U16.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("u32", U32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("u64", U64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("r32", R32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); hdf5Reader.Read("r64", R64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 2); ASSERT_EQ(gDims[1], 4); // Check if it's correct for (size_t i = 0; i < 8; ++i) { std::stringstream ss; ss << "t=" << t << " i=" << i; std::string msg = ss.str(); EXPECT_EQ(I8[i], m_TestData.I8[i + t]) << msg; EXPECT_EQ(I16[i], m_TestData.I16[i + t]) << msg; EXPECT_EQ(I32[i], m_TestData.I32[i + t]) << msg; EXPECT_EQ(I64[i], m_TestData.I64[i + t]) << msg; EXPECT_EQ(U8[i], m_TestData.U8[i + t]) << msg; EXPECT_EQ(U16[i], m_TestData.U16[i + t]) << msg; EXPECT_EQ(U32[i], m_TestData.U32[i + t]) << msg; EXPECT_EQ(U64[i], m_TestData.U64[i + t]) << msg; EXPECT_EQ(R32[i], m_TestData.R32[i + t]) << msg; EXPECT_EQ(R64[i], m_TestData.R64[i + t]) << msg; } hdf5Reader.H5_Advance(); } // Cleanup file hdf5Reader.H5_Close(); } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read2D2x4) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read2D2x4Test.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read2D2x4) { std::string fname = "HDF5WriteADIOS2HDF5Read2D2x4Test.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } //****************************************************************************** // 2D 4x2 test data //****************************************************************************** // ADIOS2 write, native HDF5 read TEST_F(HDF5WriteReadTest, ADIOS2HDF5WriteHDF5Read2D4x2) { std::string fname = "ADIOS2HDF5WriteHDF5Read2D4x2Test.h5"; // Write test data using ADIOS2 { adios::ADIOS adios(adios::Verbose::WARN, true); // Declare 1D variables { auto &var_i8 = adios.DefineVariable<char>("i8", adios::Dims{4, 2}); auto &var_i16 = adios.DefineVariable<short>("i16", adios::Dims{4, 2}); auto &var_i32 = adios.DefineVariable<int>("i32", adios::Dims{4, 2}); auto &var_i64 = adios.DefineVariable<long>("i64", adios::Dims{4, 2}); auto &var_u8 = adios.DefineVariable<unsigned char>("u8", adios::Dims{4, 2}); auto &var_u16 = adios.DefineVariable<unsigned short>("u16", adios::Dims{4, 2}); auto &var_u32 = adios.DefineVariable<unsigned int>("u32", adios::Dims{4, 2}); auto &var_u64 = adios.DefineVariable<unsigned long>("u64", adios::Dims{4, 2}); auto &var_r32 = adios.DefineVariable<float>("r32", adios::Dims{4, 2}); auto &var_r64 = adios.DefineVariable<double>("r64", adios::Dims{4, 2}); } // Create the HDF5 Engine auto method = adios.DeclareMethod("TestMethod"); method.SetEngine("HDF5Writer"); method.AddTransport("File"); auto engine = adios.Open(fname, "w", method); ASSERT_NE(engine, nullptr); for (size_t step = 0; step < 3; ++step) { // Retrieve the variables that previously went out of scope auto &var_i8 = adios.GetVariable<char>("i8"); auto &var_i16 = adios.GetVariable<short>("i16"); auto &var_i32 = adios.GetVariable<int>("i32"); auto &var_i64 = adios.GetVariable<long>("i64"); auto &var_u8 = adios.GetVariable<unsigned char>("u8"); auto &var_u16 = adios.GetVariable<unsigned short>("u16"); auto &var_u32 = adios.GetVariable<unsigned int>("u32"); auto &var_u64 = adios.GetVariable<unsigned long>("u64"); auto &var_r32 = adios.GetVariable<float>("r32"); auto &var_r64 = adios.GetVariable<double>("r64"); // Write each one engine->Write(var_i8, m_TestData.I8.data() + step); engine->Write(var_i16, m_TestData.I16.data() + step); engine->Write(var_i32, m_TestData.I32.data() + step); engine->Write(var_i64, m_TestData.I64.data() + step); engine->Write(var_u8, m_TestData.U8.data() + step); engine->Write(var_u16, m_TestData.U16.data() + step); engine->Write(var_u32, m_TestData.U32.data() + step); engine->Write(var_u64, m_TestData.U64.data() + step); engine->Write(var_r32, m_TestData.R32.data() + step); engine->Write(var_r64, m_TestData.R64.data() + step); // Advance to the next time step engine->Advance(); } // Close the file engine->Close(); } // Read test data using HDF5 #ifdef ADIOS2_HAVE_MPI // Read everything from rank 0 int rank; MPI_Comm_rank(MPI_COMM_WORLD, &rank); if (rank == 0) #endif { HDF5Direct hdf5Reader(fname, MPI_COMM_WORLD); ASSERT_TRUE(hdf5Reader.isValid()); std::array<char, 8> I8; std::array<int16_t, 8> I16; std::array<int32_t, 8> I32; std::array<int64_t, 8> I64; std::array<unsigned char, 8> U8; std::array<uint16_t, 8> U16; std::array<uint32_t, 8> U32; std::array<uint64_t, 8> U64; std::array<float, 8> R32; std::array<double, 8> R64; // Read stuff for (size_t t = 0; t < 3; ++t) { std::vector<int> gDims; hdf5Reader.Read("i8", I8.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("i16", I16.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("i32", I32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("i64", I64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("u8", U8.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("u16", U16.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("u32", U32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("u64", U64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("r32", R32.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); hdf5Reader.Read("r64", R64.data(), gDims); ASSERT_EQ(gDims.size(), 2); ASSERT_EQ(gDims[0], 4); ASSERT_EQ(gDims[1], 2); for (size_t i = 0; i < 8; ++i) { std::stringstream ss; ss << "t=" << t << " i=" << i; std::string msg = ss.str(); EXPECT_EQ(I8[i], m_TestData.I8[i + t]) << msg; EXPECT_EQ(I16[i], m_TestData.I16[i + t]) << msg; EXPECT_EQ(I32[i], m_TestData.I32[i + t]) << msg; EXPECT_EQ(I64[i], m_TestData.I64[i + t]) << msg; EXPECT_EQ(U8[i], m_TestData.U8[i + t]) << msg; EXPECT_EQ(U16[i], m_TestData.U16[i + t]) << msg; EXPECT_EQ(U32[i], m_TestData.U32[i + t]) << msg; EXPECT_EQ(U64[i], m_TestData.U64[i + t]) << msg; EXPECT_EQ(R32[i], m_TestData.R32[i + t]) << msg; EXPECT_EQ(R64[i], m_TestData.R64[i + t]) << msg; } hdf5Reader.H5_Advance(); } // Cleanup file hdf5Reader.H5_Close(); } } // ADIOS2 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_ADIOS2HDF5WriteADIOS2HDF5Read2D4x2) { std::string fname = "ADIOS2HDF5WriteADIOS2HDF5Read2D4x2Test.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } // Native HDF5 write, ADIOS2 read TEST_F(HDF5WriteReadTest, DISABLED_HDF5WriteADIOS2HDF5Read2D4x2) { std::string fname = "HDF5WriteADIOS2HDF5Read2D4x2Test.h5"; ASSERT_TRUE(false) << "ADIOS2 read API is not yet implemented"; } //****************************************************************************** // main //****************************************************************************** int main(int argc, char **argv) { #ifdef ADIOS2_HAVE_MPI MPI_Init(nullptr, nullptr); #endif ::testing::InitGoogleTest(&argc, argv); int result = RUN_ALL_TESTS(); #ifdef ADIOS2_HAVE_MPI MPI_Finalize(); #endif return result; }