/* * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * * helloBPTimeWriter.cpp example for writing a variable using the Advance * function for time aggregation. Time step is saved as an additional (global) * single value variable, just for tracking purposes. * * Created on: Feb 16, 2017 * Author: William F Godoy godoywf@ornl.gov */ #include <algorithm> //std::for_each #include <ios> //std::ios_base::failure #include <iostream> //std::cout #include <mpi.h> #include <stdexcept> //std::invalid_argument std::exception #include <vector> #include <adios2.h> int main(int argc, char *argv[]) { MPI_Init(&argc, &argv); int rank, size; MPI_Comm_rank(MPI_COMM_WORLD, &rank); MPI_Comm_size(MPI_COMM_WORLD, &size); // Application variable std::vector<float> myFloats = {0, 1, 2, 3, 4, 5, 6, 7, 8, 9}; const std::size_t Nx = myFloats.size(); try { /** ADIOS class factory of IO class objects, DebugON (default) is * recommended */ adios2::ADIOS adios(MPI_COMM_WORLD, adios2::DebugON); /// WRITE { /*** IO class object: settings and factory of Settings: Variables, * Parameters, Transports, and Execution: Engines */ adios2::IO &bpIO = adios.DeclareIO("BPFile_N2N"); bpIO.SetParameters({{"Threads", "2"}}); /** global array: name, { shape (total dimensions) }, { start * (local) }, * { count (local) }, all are constant dimensions */ const unsigned int variablesSize = 1; std::vector<adios2::Variable<float> *> bpFloats(variablesSize); adios2::Variable<std::string> &bpString = bpIO.DefineVariable<std::string>("bpString"); for (unsigned int v = 0; v < variablesSize; ++v) { std::string namev("bpFloats"); if (v < 10) { namev += "00"; } else if (v < 100) { namev += "0"; } namev += std::to_string(v); bpFloats[v] = &bpIO.DefineVariable<float>(namev, {size * Nx}, {rank * Nx}, {Nx}, adios2::ConstantDims); } /** global single value variable: name */ adios2::Variable<unsigned int> &bpTimeStep = bpIO.DefineVariable<unsigned int>("timeStep"); /** Engine derived class, spawned to start IO operations */ adios2::Engine &bpWriter = bpIO.Open("myVector.bp", adios2::Mode::Write); for (unsigned int timeStep = 0; timeStep < 3; ++timeStep) { // bpWriter.BeginStep(); if (rank == 0) // global single value, only saved by rank 0 { bpWriter.PutSync<unsigned int>(bpTimeStep, timeStep); } // template type is optional, but recommended for (unsigned int v = 0; v < variablesSize; ++v) { myFloats[0] = static_cast<float>(v + timeStep); bpWriter.PutSync(*bpFloats[v], myFloats.data()); } const std::string myString( "Hello from rank: " + std::to_string(rank) + " and timestep: " + std::to_string(timeStep)); if (rank == 0) { bpWriter.PutSync(bpString, myString); } bpWriter.EndStep(); } bpWriter.Close(); } MPI_Barrier(MPI_COMM_WORLD); { /////////////////////READ // if (rank == 0) // { adios2::IO &ioReader = adios.DeclareIO("bpReader"); adios2::Engine &bpReader = ioReader.Open("myVector.bp", adios2::Mode::Read); adios2::Variable<float> *bpFloats000 = ioReader.InquireVariable<float>("bpFloats000"); adios2::Variable<std::string> *bpString = ioReader.InquireVariable<std::string>("bpString"); if (bpFloats000 != nullptr) { bpFloats000->SetSelection({{rank * Nx}, {Nx}}); bpFloats000->SetStepSelection({3, 1}); std::vector<float> data(bpFloats000->SelectionSize()); bpReader.GetSync(*bpFloats000, data.data()); std::cout << "Data timestep " << bpFloats000->m_StepsStart << " from rank " << rank << ": "; for (const auto datum : data) { std::cout << datum << " "; } std::cout << "\n"; } else { std::cout << "Variable bpFloats000 not found\n"; } if (bpString != nullptr) { bpString->SetStepSelection({3, 1}); std::string myString; bpReader.GetSync(*bpString, myString); std::cout << myString << "\n"; } bpReader.Close(); } } catch (std::invalid_argument &e) { std::cout << "Invalid argument exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::ios_base::failure &e) { std::cout << "IO System base failure exception, STOPPING PROGRAM " "from rank " << rank << "\n"; std::cout << e.what() << "\n"; } catch (std::exception &e) { std::cout << "Exception, STOPPING PROGRAM from rank " << rank << "\n"; std::cout << e.what() << "\n"; } MPI_Finalize(); return 0; }