/* * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * * ADIOS1Reader.cpp * * Created on: Feb 27, 2017 * Author: Norbert Podhorszki pnorbert@ornl.gov */ #include "ADIOS1Reader.h" #include <adios_error.h> #include "adios2/helper/adiosFunctions.h" // CSVToVector namespace adios2 { ADIOS1Reader::ADIOS1Reader(IO &io, const std::string &name, const OpenMode openMode, MPI_Comm mpiComm) : Engine("ADIOS1Reader", io, name, openMode, mpiComm) { m_EndMessage = " in call to IO Open ADIOS1Reader " + m_Name + "\n"; Init(); adios_read_init_method(m_ReadMethod, mpiComm, ""); if (m_OpenAsFile) { m_fh = adios_read_open_file(name.c_str(), m_ReadMethod, mpiComm); } else { m_fh = adios_read_open(name.c_str(), m_ReadMethod, mpiComm, ADIOS_LOCKMODE_CURRENT, 0.0); } } ADIOS1Reader::~ADIOS1Reader() { if (m_fh != nullptr) adios_read_close(m_fh); adios_read_finalize_method(m_ReadMethod); } // PRIVATE VariableBase * ADIOS1Reader::InquireVariableUnknown(const std::string &variableName, const bool readIn) { return nullptr; // not yet implemented } Variable<char> * ADIOS1Reader::InquireVariableChar(const std::string &variableName, const bool readIn) { return InquireVariableCommon<char>(variableName, readIn); } Variable<unsigned char> * ADIOS1Reader::InquireVariableUChar(const std::string &variableName, const bool readIn) { return InquireVariableCommon<unsigned char>(variableName, readIn); } Variable<short> * ADIOS1Reader::InquireVariableShort(const std::string &variableName, const bool readIn) { return InquireVariableCommon<short>(variableName, readIn); } Variable<unsigned short> * ADIOS1Reader::InquireVariableUShort(const std::string &variableName, const bool readIn) { return InquireVariableCommon<unsigned short>(variableName, readIn); } Variable<int> *ADIOS1Reader::InquireVariableInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<int>(variableName, readIn); } Variable<unsigned int> * ADIOS1Reader::InquireVariableUInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<unsigned int>(variableName, readIn); } Variable<long int> * ADIOS1Reader::InquireVariableLInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<long int>(variableName, readIn); } Variable<unsigned long int> * ADIOS1Reader::InquireVariableULInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<unsigned long int>(variableName, readIn); } Variable<long long int> * ADIOS1Reader::InquireVariableLLInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<long long int>(variableName, readIn); } Variable<unsigned long long int> * ADIOS1Reader::InquireVariableULLInt(const std::string &variableName, const bool readIn) { return InquireVariableCommon<unsigned long long int>(variableName, readIn); } Variable<float> * ADIOS1Reader::InquireVariableFloat(const std::string &variableName, const bool readIn) { return InquireVariableCommon<float>(variableName, readIn); } Variable<double> * ADIOS1Reader::InquireVariableDouble(const std::string &variableName, const bool readIn) { return InquireVariableCommon<double>(variableName, readIn); } Variable<long double> * ADIOS1Reader::InquireVariableLDouble(const std::string &variableName, const bool readIn) { return InquireVariableCommon<long double>(variableName, readIn); } Variable<std::complex<float>> * ADIOS1Reader::InquireVariableCFloat(const std::string &variableName, const bool readIn) { return InquireVariableCommon<std::complex<float>>(variableName, readIn); } Variable<std::complex<double>> * ADIOS1Reader::InquireVariableCDouble(const std::string &variableName, const bool readIn) { return InquireVariableCommon<std::complex<double>>(variableName, readIn); } Variable<std::complex<long double>> * ADIOS1Reader::InquireVariableCLDouble(const std::string &variableName, const bool readIn) { return InquireVariableCommon<std::complex<long double>>(variableName, readIn); } VariableCompound * ADIOS1Reader::InquireVariableCompound(const std::string &variableName, const bool readIn) { return nullptr; } void ADIOS1Reader::ScheduleReadCommon(const std::string &name, const Dims &offs, const Dims &ldims, const int fromStep, const int nSteps, const bool readAsLocalValue, const bool readAsJoinedArray, void *data) { if (readAsLocalValue) { /* Get all the requested values from metadata now */ ADIOS_VARINFO *vi = adios_inq_var(m_fh, name.c_str()); if (vi) { adios_inq_var_stat(m_fh, vi, 0, 1); int elemsize = adios_type_size(vi->type, nullptr); long long blockidx = 0; for (int i = 0; i < fromStep; i++) { blockidx += vi->nblocks[i]; } char *dest = (char *)data; for (int i = fromStep; i < fromStep + nSteps; i++) { for (int j = 0; j < vi->nblocks[i]; j++) { memcpy(dest, vi->statistics->blocks->mins[blockidx], elemsize); ++blockidx; dest += elemsize; } } } } else { uint64_t start[32], count[32]; for (int i = 0; i < ldims.size(); i++) { start[i] = (uint64_t)offs[i]; count[i] = (uint64_t)ldims[i]; } ADIOS_SELECTION *sel = nullptr; if (ldims.size() > 0) { sel = adios_selection_boundingbox(ldims.size(), start, count); } adios_schedule_read(m_fh, sel, name.c_str(), (int)fromStep, (int)nSteps, data); adios_selection_delete(sel); } } #define declare_type(T) \ void ADIOS1Reader::DoScheduleRead(Variable<T> &variable, const T *values) \ { \ ScheduleReadCommon(variable.m_Name, variable.m_Start, \ variable.m_Count, variable.m_ReadFromStep, \ variable.m_ReadNSteps, variable.m_ReadAsLocalValue, \ variable.m_ReadAsJoined, (void *)values); \ } \ \ void ADIOS1Reader::DoScheduleRead(const std::string &variableName, \ const T *values) \ { \ DoScheduleRead(m_IO.GetVariable<T>(variableName), values); \ } ADIOS2_FOREACH_TYPE_1ARG(declare_type) #undef declare_type void ADIOS1Reader::PerformReads(ReadMode mode) { adios_perform_reads(m_fh, (int)mode); } void ADIOS1Reader::Release() { adios_release_step(m_fh); } void ADIOS1Reader::Advance(const float timeout_sec) { Advance(AdvanceMode::NextAvailable, timeout_sec); } void ADIOS1Reader::Advance(AdvanceMode mode, const float timeout_sec) { if (m_OpenAsFile) { throw std::invalid_argument("ERROR: ADIOS1Reader does not allow " "Advance() on a file which was opened for " "read as File\n"); } int last = (mode == AdvanceMode::NextAvailable ? 0 : 1); float *to = const_cast<float *>(&timeout_sec); adios_advance_step(m_fh, last, *to); switch (adios_errno) { case err_no_error: m_AdvanceStatus = AdvanceStatus::OK; break; case err_end_of_stream: m_AdvanceStatus = AdvanceStatus::EndOfStream; break; case err_step_notready: m_AdvanceStatus = AdvanceStatus::StepNotReady; break; default: m_AdvanceStatus = AdvanceStatus::OtherError; break; } } void ADIOS1Reader::AdvanceAsync( AdvanceMode mode, std::function<void(std::shared_ptr<adios2::Engine>)> callback) { throw std::invalid_argument( "ERROR: ADIOS1Reader doesn't support AdvanceSync()\n"); } void ADIOS1Reader::Close(const int transportIndex) { adios_read_close(m_fh); m_fh = nullptr; } // PRIVATE void ADIOS1Reader::Init() { if (m_DebugMode) { if (m_OpenMode != OpenMode::Read) { throw std::invalid_argument( "ERROR: ADIOS1Reader only supports OpenMode::r (read) access " "mode " + m_EndMessage); } } InitParameters(); InitTransports(); } void ADIOS1Reader::InitParameters() { auto itOpenAsFile = m_IO.m_Parameters.find("OpenAsFile"); if (itOpenAsFile != m_IO.m_Parameters.end()) { m_OpenAsFile = true; } } void ADIOS1Reader::InitTransports() { for (const auto ¶meters : m_IO.m_TransportsParameters) { auto itTransport = parameters.find("transport"); if (itTransport->second == "file" || itTransport->second == "File" || itTransport->second == "bp" || itTransport->second == "BP") { m_ReadMethod = ADIOS_READ_METHOD_BP; } else { if (m_DebugMode) { throw std::invalid_argument( "ERROR: transport " + itTransport->second + " (you mean File?) not supported, in " + m_Name + m_EndMessage); } } } } static void CheckADIOS1Type(const std::string &name, std::string adios2Type, std::string adios1Type) { if (adios1Type != adios2Type) { throw std::invalid_argument( "Type mismatch. The expected ADIOS2 type <" + adios2Type + "> is not compatible with ADIOS1 type <" + adios1Type + "> of the requested variable '" + name + "'\n"); } } bool ADIOS1Reader::CheckADIOS1TypeCompatibility(const std::string &name, std::string adios2Type, enum ADIOS_DATATYPES adios1Type) { bool compatible = false; switch (adios1Type) { case adios_unsigned_byte: CheckADIOS1Type(name, adios2Type, "unsigned char"); break; case adios_unsigned_short: CheckADIOS1Type(name, adios2Type, "unsigned short"); break; case adios_unsigned_integer: CheckADIOS1Type(name, adios2Type, "unsigned int"); break; case adios_unsigned_long: CheckADIOS1Type(name, adios2Type, "unsigned long long int"); break; case adios_byte: CheckADIOS1Type(name, adios2Type, "char"); break; case adios_short: CheckADIOS1Type(name, adios2Type, "short"); break; case adios_integer: CheckADIOS1Type(name, adios2Type, "int"); break; case adios_long: CheckADIOS1Type(name, adios2Type, "long long int"); break; case adios_real: CheckADIOS1Type(name, adios2Type, "float"); break; case adios_double: CheckADIOS1Type(name, adios2Type, "double"); break; case adios_long_double: CheckADIOS1Type(name, adios2Type, "long double"); break; case adios_string: CheckADIOS1Type(name, adios2Type, "string"); break; case adios_complex: CheckADIOS1Type(name, adios2Type, "float complex"); break; case adios_double_complex: CheckADIOS1Type(name, adios2Type, "double complex"); break; case adios_string_array: compatible = false; break; default: compatible = false; } return true; } } // end namespace