Fail to build ADIOS2 in Bebop

Created by: tongshu83

$ module unload intel-mkl/2017.3.196-v7uuj6z $ module load intel/17.0.4-74uvhji $ module load intel-mpi/2017.3-dfphq6k $ module load libpsm2/10.3-17 $ module load cmake/3.13.4-354d6wl $ module load jdk/8u141-b15-mopj6qr $ module load tcl/8.6.6-x4wnbsg $ module load bzip2/1.0.6-hcvyuh5 $ module load zlib/1.2.11-6632jqd $ module load anaconda3/5.2.0

$ cd ADIOS2 $ mkdir build $ cd build $ cmake -DCMAKE_INSTALL_PREFIX=../../install/adios2 -DADIOS2_USE_Fortran=OFF .. ... ADIOS2 build configuration: ADIOS Version: 2.4.0.239 C++ Compiler : GNU 4.8.5 /usr/bin/c++

Installation prefix: /lcrc/project/PACC/tong/HPC_Autotuner/install/adios2 bin: bin lib: lib64 include: include cmake: lib64/cmake/adios2 python: lib64/python3.6/site-packages

Features: Library Type: shared Build Type: Release Testing: ON Build Options: Blosc : OFF BZip2 : ON ZFP : OFF SZ : OFF MGARD : OFF PNG : ON MPI : ON DataMan : OFF Table : OFF SSC : OFF SST : ON DataSpaces: OFF ZeroMQ : OFF HDF5 : OFF Python : ON Fortran : OFF SysVShMem: ON Profiling: ON Endian_Reverse: OFF RDMA Transport for Staging: Available

-- Configuring done -- Generating done

$ make -j8 ... [ 48%] Linking CXX shared library ../../lib64/libadios2.so [ 48%] Built target adios2 Scanning dependencies of target sst_conn_tool Scanning dependencies of target TestADIOSInterfaceWrite Scanning dependencies of target TestADIOSInterface Scanning dependencies of target TestADIOSNoMpi Scanning dependencies of target bpls Scanning dependencies of target adios_reorganize [ 48%] Building CXX object testing/adios2/interface/CMakeFiles/TestADIOSInterface.dir/TestADIOSInterface.cpp.o [ 48%] Building C object source/adios2/toolkit/sst/util/CMakeFiles/sst_conn_tool.dir/sst_conn_tool.c.o [ 48%] Building CXX object testing/adios2/interface/CMakeFiles/TestADIOSInterfaceWrite.dir/TestADIOSInterfaceWrite.cpp.o [ 48%] Building CXX object testing/adios2/interface/CMakeFiles/TestADIOSNoMpi.dir/TestADIOSNoMpi.cpp.o [ 49%] Building CXX object source/utils/CMakeFiles/bpls.dir/bpls/bpls.cpp.o [ 50%] Building CXX object source/utils/CMakeFiles/adios_reorganize.dir/adios_reorganize/main.cpp.o Scanning dependencies of target adios_iotest [ 50%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/settings.cpp.o [ 51%] Linking C executable ../../../../../bin/sst_conn_tool [ 51%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/decomp.cpp.o /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/sst_conn_tool] Error 1 make[1]: *** [source/adios2/toolkit/sst/util/CMakeFiles/sst_conn_tool.dir/all] Error 2 make[1]: *** Waiting for unfinished jobs.... [ 51%] Building CXX object source/utils/CMakeFiles/adios_reorganize.dir/adios_reorganize/Reorganize.cpp.o [ 51%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/processConfig.cpp.o [ 51%] Building CXX object source/utils/CMakeFiles/adios_reorganize.dir/Utils.cpp.o [ 51%] Linking CXX executable ../../../bin/TestADIOSNoMpi /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/TestADIOSNoMpi] Error 1 make[1]: *** [testing/adios2/interface/CMakeFiles/TestADIOSNoMpi.dir/all] Error 2 [ 51%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/ioGroup.cpp.o Scanning dependencies of target adios2py [ 51%] Building CXX object source/utils/CMakeFiles/bpls.dir///thirdparty/pugixml/pugixml/src/pugixml.cpp.o [ 51%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11ADIOS.cpp.o [ 51%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11IO.cpp.o [ 52%] Linking CXX executable ../../bin/adios_reorganize [ 52%] Linking CXX executable ../../../bin/TestADIOSInterfaceWrite /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/adios_reorganize] Error 1 make[1]: *** [source/utils/CMakeFiles/adios_reorganize.dir/all] Error 2 [ 53%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/stream.cpp.o /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/TestADIOSInterfaceWrite] Error 1 make[1]: *** [testing/adios2/interface/CMakeFiles/TestADIOSInterfaceWrite.dir/all] Error 2 [ 53%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/adiosStream.cpp.o [ 53%] Building CXX object source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/adios_iotest.cpp.o [ 53%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11Variable.cpp.o [ 53%] Linking CXX executable ../../../bin/TestADIOSInterface [ 54%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11Attribute.cpp.o /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/TestADIOSInterface] Error 1 make[1]: *** [testing/adios2/interface/CMakeFiles/TestADIOSInterface.dir/all] Error 2 [ 54%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11Engine.cpp.o [ 54%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11Operator.cpp.o [ 54%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11File.cpp.o [ 54%] Linking CXX executable ../../../bin/adios_iotest /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/adios_iotest] Error 1 make[1]: *** [source/utils/adios_iotest/CMakeFiles/adios_iotest.dir/all] Error 2 [ 54%] Building CXX object bindings/Python/CMakeFiles/adios2py.dir/py11glue.cpp.o [ 54%] Linking CXX executable ../../bin/bpls /usr/bin/ld: warning: libpsm_infinipath.so.1, needed by //usr/lib64/libfabric.so.1, not found (try using -rpath or -rpath-link) //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_fp_msg@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_get_parameters' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_isend' ../../lib64/libadios2.so.2.4.0: undefined reference to png_image_begin_read_from_memory' //usr/lib64/libfabric.so.1: undefined reference to psm_am_reply_short' //usr/lib64/libfabric.so.1: undefined reference to psm2_info_query@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_getctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_num_devunits' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_send' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open_opts_get_defaults' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_init' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm2_mq_ipeek_dequeue_multi@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_am_request_short' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_connect' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_cancel' //usr/lib64/libfabric.so.1: undefined reference to psm2_am_register_handlers_2@PSM2_1.0' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_close' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_ipeek' //usr/lib64/libfabric.so.1: undefined reference to psm_epaddr_setctxt' //usr/lib64/libfabric.so.1: undefined reference to psm_finalize' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_test' ../../lib64/libadios2.so.2.4.0: undefined reference to png_image_finish_read' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_irecv' //usr/lib64/libfabric.so.1: undefined reference to psm_mq_iprobe' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_epid_lookup' //usr/lib64/libfabric.so.1: undefined reference to psm_error_register_handler' //usr/lib64/libfabric.so.1: undefined reference to psm_am_register_handlers' //usr/lib64/libfabric.so.1: undefined reference to psm_ep_open' //usr/lib64/libfabric.so.1: undefined reference to psm_init' //usr/lib64/libfabric.so.1: undefined reference to `psm_error_get_string' collect2: error: ld returned 1 exit status make[2]: *** [bin/bpls] Error 1 make[1]: *** [source/utils/CMakeFiles/bpls.dir/all] Error 2 [ 55%] Linking CXX shared module ../../lib64/python3.6/site-packages/adios2.cpython-36m-x86_64-linux-gnu.so [ 55%] Built target adios2py make: *** [all] Error 2 [tshu@beboplogin2 HPC_Autotuner]$ vi build-adios2.sh E575: viminfo: Illegal starting char in line: 0/time.txt E575: viminfo: Illegal starting char in line: ^I"^I1^I0

Could you please let me know how to fix this issue? Thank you very much!