ADIOS2_USE_DataMan=ON not working with non-mpi builds
Created by: williamfgc
To reproduce on Ubuntu 16.04 DataMan is OFF but ZeroMQ is ON.
cmake \
-GNinja \
-DCMAKE_INSTALL_PREFIX=/home/wgodoy/tmp/adios/2.2.0 \
-DADIOS2_USE_MPI=OFF \
-DADIOS2_USE_DataMan=ON \
-DADIOS2_USE_SST=ON \
-DZFP_ROOT=/opt/zfp/0.5.3 \
-DSZ_ROOT=/opt/sz/2.0.2.1 \
-DMGARD_ROOT=/opt/mgard/0.0.0.1 \
-DCMAKE_BUILD_TYPE=Debug \
-DADIOS2_BUILD_EXAMPLES=ON \
-DADIOS2_BUILD_TESTING=ON \
-DADIOS2_USE_Endian_Reverse=ON \
../ADIOS2-- The C compiler identification is GNU 5.4.0
-- The CXX compiler identification is GNU 5.4.0
-- Check for working C compiler: /usr/bin/cc
-- Check for working C compiler: /usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found BZip2: /usr/lib/x86_64-linux-gnu/libbz2.so (found version "1.0.6")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
-- Found ZFP: /opt/zfp/0.5.3/lib/libzfp.so
-- Found SZ: /opt/sz/2.0.2.1/lib/libSZ.so
-- Could NOT find MGARD (missing: MGARD_LIBRARY MGARD_INCLUDE_DIR)
-- Looking for a Fortran compiler
-- Looking for a Fortran compiler - NOTFOUND
-- Found ZeroMQ: /usr/lib/x86_64-linux-gnu/libzmq.so (found suitable version "4.1.4", minimum required is "4.1")
-- HDF5: Using hdf5 compiler wrapper to determine C configuration
-- Found HDF5: /usr/lib/x86_64-linux-gnu/hdf5/openmpi/libhdf5.so;/usr/lib/x86_64-linux-gnu/libsz.so;/usr/lib/x86_64-linux-gnu/libz.so;/usr/lib/x86_64-linux-gnu/libdl.so;/usr/lib/x86_64-linux-gnu/libm.so (found version "1.8.16") found components: C
-- Found PythonInterp: /usr/bin/python3 (found version "3.5.2")
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so (found version "3.5.2")
-- Found PythonModule_numpy: /usr/lib/python3/dist-packages/numpy
-- Found PythonFull: /usr/bin/python3 found components: Interp Libs numpy
-- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.1")
-- Checking for module 'libfabric'
-- No package 'libfabric' found
-- Could NOT find LIBFABRIC (missing: LIBFABRIC_LIBRARIES) (Required is at least version "1.6")
-- Looking for shmget
-- Looking for shmget - found
-- Looking for pthread.h
-- Looking for pthread.h - found
-- Looking for pthread_create
-- Looking for pthread_create - not found
-- Looking for pthread_create in pthreads
-- Looking for pthread_create in pthreads - not found
-- Looking for pthread_create in pthread
-- Looking for pthread_create in pthread - found
-- Found Threads: TRUE
-- ADIOS2 ThirdParty: Configuring KWSys
-- Checking whether header cstdio is available
-- Checking whether header cstdio is available - yes
-- Checking for Large File Support
-- Checking for Large File Support - yes
-- Checking whether C++ compiler has 'long long'
-- Checking whether C++ compiler has 'long long' - yes
-- Checking whether C++ compiler has '__int64'
-- Checking whether C++ compiler has '__int64' - no
-- Checking whether wstring is available
-- Checking whether wstring is available - yes
-- Checking whether C compiler has ptrdiff_t in stddef.h
-- Checking whether C compiler has ptrdiff_t in stddef.h - yes
-- Checking whether C compiler has ssize_t in unistd.h
-- Checking whether C compiler has ssize_t in unistd.h - yes
-- Checking whether CXX compiler has setenv
-- Checking whether CXX compiler has setenv - yes
-- Checking whether CXX compiler has unsetenv
-- Checking whether CXX compiler has unsetenv - yes
-- Checking whether CXX compiler has environ in stdlib.h
-- Checking whether CXX compiler has environ in stdlib.h - no
-- Checking whether CXX compiler has utimes
-- Checking whether CXX compiler has utimes - yes
-- Checking whether CXX compiler has utimensat
-- Checking whether CXX compiler has utimensat - yes
-- Checking whether CXX compiler struct stat has st_mtim member
-- Checking whether CXX compiler struct stat has st_mtim member - yes
-- Checking whether CXX compiler struct stat has st_mtimespec member
-- Checking whether CXX compiler struct stat has st_mtimespec member - no
-- Checking whether <ext/stdio_filebuf.h> is available
-- Checking whether <ext/stdio_filebuf.h> is available - yes
-- ADIOS2 ThirdParty: Configuring GTest
-- Check if compiler accepts -pthread
-- Check if compiler accepts -pthread - yes
-- ADIOS2 ThirdParty: Configuring pybind11
-- Found PythonLibs: /usr/lib/x86_64-linux-gnu/libpython3.5m.so
-- pybind11 v2.2.4
-- ADIOS2 ThirdParty: Configuring pugixml
-- ADIOS2 ThirdParty: Configuring nlohmann_json
-- ADIOS2 ThirdParty: Configuring atl
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of double
-- Check size of double - done
-- Check size of float
-- Check size of float - done
-- Check size of int
-- Check size of int - done
-- Check size of short
-- Check size of short - done
-- Looking for include file malloc.h
-- Looking for include file malloc.h - found
-- Looking for include file unistd.h
-- Looking for include file unistd.h - found
-- Looking for include file stdlib.h
-- Looking for include file stdlib.h - found
-- Looking for include file string.h
-- Looking for include file string.h - found
-- Looking for include file sys/time.h
-- Looking for include file sys/time.h - found
-- Looking for include file windows.h
-- Looking for include file windows.h - not found
-- Looking for fork
-- Looking for fork - found
-- Found atl: /home/wgodoy/workspace/build/thirdparty/atl/atl/atl-config.cmake (found version "2.2.1")
-- ADIOS2 ThirdParty: Configuring dill
-- Check size of void*
-- Check size of void* - done
-- Check size of long
-- Check size of long - done
-- Check if the system is big endian
-- Searching 16 bit integer
-- Check size of unsigned short
-- Check size of unsigned short - done
-- Using unsigned short
-- Check if the system is big endian - little endian
-- Checking for module 'libffi'
-- Found libffi, version 3.2.1
-- Found LibFFI: -lffi
-- Enabling emulation
-- Looking for include file stdarg.h
-- Looking for include file stdarg.h - found
-- Looking for include file memory.h
-- Looking for include file memory.h - found
-- Found dill: /home/wgodoy/workspace/build/thirdparty/dill/dill/dill-config.cmake (found version "2.4.0")
-- ADIOS2 ThirdParty: Configuring ffs
-- Check size of off_t
-- Check size of off_t - done
-- Check size of long double
-- Check size of long double - done
-- Check size of long long
-- Check size of long long - done
-- Check size of size_t
-- Check size of size_t - done
-- Looking for socket
-- Looking for socket - found
-- Found BISON: /usr/bin/bison (found version "3.0.4")
-- Found FLEX: /usr/bin/flex (found version "2.6.0")
-- Found dill: /home/wgodoy/workspace/build/thirdparty/dill/dill/dill-config.cmake (found suitable version "2.4.0", minimum required is "2.3.1")
-- Found atl: /home/wgodoy/workspace/build/thirdparty/atl/atl/atl-config.cmake (found suitable version "2.2.1", minimum required is "2.2.1")
-- Looking for netdb.h
-- Looking for netdb.h - found
-- Looking for sockLib.h
-- Looking for sockLib.h - not found
-- Looking for sys/select.h
-- Looking for sys/select.h - found
-- Looking for sys/socket.h
-- Looking for sys/socket.h - found
-- Looking for sys/times.h
-- Looking for sys/times.h - found
-- Looking for sys/uio.h
-- Looking for sys/uio.h - found
-- Looking for sys/un.h
-- Looking for sys/un.h - found
-- Looking for winsock.h
-- Looking for winsock.h - not found
-- Looking for strtof
-- Looking for strtof - found
-- Looking for strtod
-- Looking for strtod - found
-- Looking for strtold
-- Looking for strtold - found
-- Looking for getdomainname
-- Looking for getdomainname - found
-- Check size of struct iovec
-- Check size of struct iovec - done
-- Performing Test HAS_IOV_BASE_IOVEC
-- Performing Test HAS_IOV_BASE_IOVEC - Success
-- Found ffs: /home/wgodoy/workspace/build/thirdparty/ffs/ffs/ffs-config.cmake (found version "1.6.0")
-- ADIOS2 ThirdParty: Configuring enet
-- Looking for getaddrinfo
-- Looking for getaddrinfo - found
-- Looking for getnameinfo
-- Looking for getnameinfo - found
-- Looking for gethostbyaddr_r
-- Looking for gethostbyaddr_r - found
-- Looking for gethostbyname_r
-- Looking for gethostbyname_r - found
-- Looking for poll
-- Looking for poll - found
-- Looking for fcntl
-- Looking for fcntl - found
-- Looking for inet_pton
-- Looking for inet_pton - found
-- Looking for inet_ntop
-- Looking for inet_ntop - found
-- Performing Test HAS_MSGHDR_FLAGS
-- Performing Test HAS_MSGHDR_FLAGS - Success
-- Performing Test HAS_SOCKLEN_T
-- Performing Test HAS_SOCKLEN_T - Success
-- Found enet: /home/wgodoy/workspace/build/thirdparty/enet/enet/enet-config.cmake (found version "1.3.14")
-- ADIOS2 ThirdParty: Configuring EVPath
-- Performing Test HAVE_MATH
-- Performing Test HAVE_MATH - Failed
-- Performing Test HAVE_LIBM_MATH
-- Performing Test HAVE_LIBM_MATH - Success
-- Found ffs: /home/wgodoy/workspace/build/thirdparty/ffs/ffs/ffs-config.cmake (found suitable version "1.6.0", minimum required is "1.5.1")
-- Could NOT find nvml (missing: NVML_LIBRARY NVML_INCLUDE_DIR)
-- Looking for clock_gettime
-- Looking for clock_gettime - found
-- Found enet: /home/wgodoy/workspace/build/thirdparty/enet/enet/enet-config.cmake (found suitable version "1.3.14", minimum required is "1.3.13")
-- - Udt4 library was not found. This is not a fatal error, just that the Udt4 transport will not be built.
-- Checking for module 'libfabric'
-- No package 'libfabric' found
-- Could NOT find LIBFABRIC (missing: LIBFABRIC_LIBRARIES)
-- Looking for ibv_create_qp
-- Looking for ibv_create_qp - not found
-- Looking for ibv_create_qp in ibverbs
-- Looking for ibv_create_qp in ibverbs - found
-- Found IBVERBS: ibverbs
-- Could NOT find nnti (missing: NNTI_INCLUDE_DIR NNTI_trios_nnti_LIBRARY NNTI_trios_support_LIBRARY)
-- Looking for hostlib.h
-- Looking for hostlib.h - not found
-- Looking for sys/sockio.h
-- Looking for sys/sockio.h - not found
-- Performing Test HAVE_FDS_BITS
-- Performing Test HAVE_FDS_BITS - Failed
-- Looking for writev
-- Looking for writev - found
-- Looking for uname
-- Looking for uname - found
-- Looking for getloadavg
-- Looking for getloadavg - found
-- Looking for gettimeofday
-- Looking for gettimeofday - found
-- Looking for getifaddrs
-- Looking for getifaddrs - found
-- Found EVPath: /home/wgodoy/workspace/build/thirdparty/EVPath/EVPath/EVPathConfigCommon.cmake (found version "4.4.0")
-- Performing Test HAS_FLTO
-- Performing Test HAS_FLTO - Success
-- LTO enabled
ADIOS2 build configuration:
ADIOS Version: 2.3.1
C++ Compiler : GNU 5.4.0
/usr/bin/c++
Installation prefix: /home/wgodoy/tmp/adios/2.2.0
bin: bin
lib: lib
include: include
cmake: lib/cmake/adios2
python: lib/python3.5/site-packages
Features:
Library Type: shared
Build Type: Debug
Testing: ON
Build Options:
BZip2 : ON
ZFP : ON
SZ : ON
MGARD : OFF
MPI : OFF
DataMan : OFF
WDM : OFF
SST : ON
ZeroMQ : ON
HDF5 : OFF
Python : ON
Fortran : OFF
SysVShMem: ON
Endian_Reverse: ON
-- Configuring done
-- Generating done
-- Build files have been written to: /home/wgodoy/workspace/build