From d0bcebdc02ec53812d95018f22bbc6f71a89ce86 Mon Sep 17 00:00:00 2001 From: Chuck Atkins <chuck.atkins@kitware.com> Date: Wed, 19 Apr 2017 13:09:16 -0400 Subject: [PATCH] Use ADIOSConfig.h header instead of -D flags --- CMakeLists.txt | 3 + cmake/GenerateADIOSConfig.cmake | 66 +++++++++++++++++++++ source/ADIOS.cpp | 14 ++--- source/ADIOS.h | 7 ++- source/ADIOSTypes.h | 2 + source/ADIOS_MPI.h | 6 +- source/CMakeLists.txt | 11 ++-- source/adios2.h.in | 1 + source/capsule/heap/STLVector.h | 1 + source/capsule/shmem/ShmSystemV.h | 1 + source/core/Attribute.h | 2 + source/core/Capsule.h | 2 + source/core/Engine.h | 20 +++---- source/core/IOChrono.h | 3 +- source/core/Method.h | 5 +- source/core/Selection.h | 2 + source/core/SelectionBoundingBox.h | 3 +- source/core/SelectionPoints.h | 3 +- source/core/Support.h | 2 + source/core/Timer.h | 3 +- source/core/Transform.h | 2 + source/core/Transport.h | 5 +- source/core/Variable.h | 5 +- source/core/VariableBase.h | 7 ++- source/core/VariableCompound.h | 3 +- source/core/adiosFunctions.cpp | 4 +- source/core/adiosFunctions.h | 5 +- source/core/adiosTemplates.h | 2 + source/core/capsuleTemplates.h | 3 +- source/engine/adios1/ADIOS1Reader.h | 9 +-- source/engine/adios1/ADIOS1Writer.h | 1 + source/engine/bp/BPFileReader.h | 2 +- source/engine/bp/BPFileWriter.h | 2 +- source/engine/dataman/DataManReader.h | 3 +- source/engine/dataman/DataManWriter.h | 3 +- source/engine/hdf5/HDF5WriterP.cpp | 4 +- source/engine/hdf5/HDF5WriterP.h | 6 +- source/mpidummy.h | 2 + source/transform/BZip2.h | 1 + source/transport/file/FStream.h | 1 + source/transport/file/FileDescriptor.h | 1 + source/transport/file/FilePointer.h | 1 + source/transport/file/MPI_File.h | 3 +- source/transport/wan/MdtmMan.h | 2 +- source/utilities/format/bp1/BP1.h | 1 + source/utilities/format/bp1/BP1Aggregator.h | 1 + source/utilities/format/bp1/BP1Base.h | 2 +- source/utilities/format/bp1/BP1Structs.h | 1 + source/utilities/format/bp1/BP1Writer.h | 2 +- source/utilities/realtime/dataman/DataMan.h | 1 + 50 files changed, 169 insertions(+), 73 deletions(-) create mode 100644 cmake/GenerateADIOSConfig.cmake diff --git a/CMakeLists.txt b/CMakeLists.txt index c0d1a2064..842a4187b 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -78,6 +78,9 @@ option(ADIOS_USE_HDF5 "Enable support for the HDF5 engine" OFF) # platform supports it. set(ADIOS_USE_DataMan ${SHARED_LIBS_SUPPORTED}) +include(GenerateADIOSConfig) +GenerateADIOSConfig(MPI BZip2 ADIOS1 HDF5 DataMan) + #------------------------------------------------------------------------------# # Third party libraries #------------------------------------------------------------------------------# diff --git a/cmake/GenerateADIOSConfig.cmake b/cmake/GenerateADIOSConfig.cmake new file mode 100644 index 000000000..41b5b5ef6 --- /dev/null +++ b/cmake/GenerateADIOSConfig.cmake @@ -0,0 +1,66 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +function(GenerateADIOSConfig) + + file(WRITE ${ADIOS_BINARY_DIR}/ADIOSConfig.h +"/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + +#ifndef ADIOSCONFIG_H_ +#define ADIOSCONFIG_H_ + +/* ADIOS Version Information */ +#define ADIOS2_VERSION_MAJOR ${ADIOS_VERSION_MAJOR} +#define ADIOS2_VERSION_MINOR ${ADIOS_VERSION_MINOR} +#define ADIOS2_VERSION_PATCH ${ADIOS_VERSION_PATCH} +#define ADIOS2_VERSION ${ADIOS_VERSION} +" ) + + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h " +/* + * ADIOS Build Information: + * + * Compiler: +" ) + foreach(L IN ITEMS C CXX Fortran) + if(NOT CMAKE_${L}_COMPILER) + continue() + endif() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * ${L}: ${CMAKE_${L}_COMPILER}\n" + ) + if(CMAKE_${L}_COMPILER_WRAPPER) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * Wrapper: ${CMAKE_${L}_COMPILER_WRAPPER}\n" + ) + endif() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * Id: ${CMAKE_${L}_COMPILER_ID} ${CMAKE_${L}_COMPILER_VERSION}\n" + ) + endforeach() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h " */\n") + + foreach(OPT IN LISTS ARGN) + string(TOUPPER ${OPT} OPT_UPPER) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "\n/* CMake Option: ADIOS_USE_${OPT}=${ADIOS_USE_${OPT}} */\n" + ) + if(ADIOS_USE_${OPT}) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "#define ADIOS2_HAVE_${OPT_UPPER} 1\n" + ) + else() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "#undef ADIOS2_HAVE_${OPT_UPPER}\n" + ) + endif() + endforeach() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "\n#endif /* ADIOSCONFIG_H_ */\n" + ) +endfunction() diff --git a/source/ADIOS.cpp b/source/ADIOS.cpp index a6748445d..19e0e54cf 100644 --- a/source/ADIOS.cpp +++ b/source/ADIOS.cpp @@ -26,17 +26,17 @@ #include "engine/bp/BPFileReader.h" #include "engine/bp/BPFileWriter.h" -#ifdef ADIOS_HAVE_DATAMAN // external dependencies +#ifdef ADIOS2_HAVE_DATAMAN // external dependencies #include "engine/dataman/DataManReader.h" #include "engine/dataman/DataManWriter.h" #endif -#ifdef ADIOS_HAVE_ADIOS1 // external dependencies +#ifdef ADIOS2_HAVE_ADIOS1 // external dependencies #include "engine/adios1/ADIOS1Reader.h" #include "engine/adios1/ADIOS1Writer.h" #endif -#ifdef ADIOS_HAVE_HDF5 // external dependencies +#ifdef ADIOS2_HAVE_HDF5 // external dependencies #include "engine/hdf5/HDF5ReaderP.h" #include "engine/hdf5/HDF5WriterP.h" #endif @@ -154,7 +154,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "DataManWriter") { -#ifdef ADIOS_HAVE_DATAMAN +#ifdef ADIOS2_HAVE_DATAMAN return std::make_shared<DataManWriter>(*this, name, accessMode, mpiComm, method); #else @@ -165,7 +165,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "DataManReader") { -#ifdef ADIOS_HAVE_DATAMAN +#ifdef ADIOS2_HAVE_DATAMAN return std::make_shared<DataManReader>(*this, name, accessMode, mpiComm, method); #else @@ -176,7 +176,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "ADIOS1Writer") { -#ifdef ADIOS_HAVE_ADIOS1 +#ifdef ADIOS2_HAVE_ADIOS1 return std::make_shared<ADIOS1Writer>(*this, name, accessMode, mpiComm, method); #else @@ -193,7 +193,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "HDF5Writer") // -junmin { -#ifdef ADIOS_HAVE_HDF5 +#ifdef ADIOS2_HAVE_HDF5 return std::make_shared<HDF5Writer>(*this, name, accessMode, mpiComm, method); #else diff --git a/source/ADIOS.h b/source/ADIOS.h index e6d0b8caa..8b7ac1e11 100644 --- a/source/ADIOS.h +++ b/source/ADIOS.h @@ -2,9 +2,10 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * ADIOS.\ * + * ADIOS.h * Created on: Oct 3, 2016 - * Author: wfg`123 */ + * Author: wfg + */ #ifndef ADIOS_H_ #define ADIOS_H_ @@ -19,9 +20,9 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "ADIOSMacros.h" #include "ADIOS_MPI.h" - #include "ADIOSTypes.h" #include "core/Method.h" #include "core/Support.h" diff --git a/source/ADIOSTypes.h b/source/ADIOSTypes.h index 585a7f680..a2d52421b 100644 --- a/source/ADIOSTypes.h +++ b/source/ADIOSTypes.h @@ -16,6 +16,8 @@ #include <cstdint> #include <type_traits> +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/ADIOS_MPI.h b/source/ADIOS_MPI.h index 1a310f04f..83b5a212c 100644 --- a/source/ADIOS_MPI.h +++ b/source/ADIOS_MPI.h @@ -6,10 +6,10 @@ #ifndef ADIOS_MPI_H_ #define ADIOS_MPI_H_ -#ifdef ADIOS_HAVE_MPI -#define OMPI_SKIP_MPICXX 1 // workaround for OpenMPI forcing C++ bindings +#include "ADIOSConfig.h" + +#ifdef ADIOS2_HAVE_MPI #include <mpi.h> -#undef OMPI_SKIP_MPICXX #else #include "mpidummy.h" #endif diff --git a/source/CMakeLists.txt b/source/CMakeLists.txt index e138a98cd..67d28164f 100644 --- a/source/CMakeLists.txt +++ b/source/CMakeLists.txt @@ -49,21 +49,18 @@ if(ADIOS_USE_DataMan) utilities/realtime/dataman/DataManBase.cpp utilities/realtime/dataman/DataMan.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_DATAMAN) target_link_libraries(adios2 PRIVATE ${CMAKE_DL_LIBS}) endif() if(ADIOS_USE_BZip2) find_package(BZip2 REQUIRED) target_sources(adios2 PRIVATE transform/BZip2.cpp) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_BZIP2) target_link_libraries(adios2 PRIVATE BZip2::BZip2) endif() if(ADIOS_USE_MPI) find_package(MPI COMPONENTS C REQUIRED) target_include_directories(adios2 PUBLIC ${MPI_C_INCLUDE_PATH}) - target_compile_definitions(adios2 PUBLIC ADIOS_HAVE_MPI) target_link_libraries(adios2 PUBLIC ${MPI_C_LIBRARIES}) else() target_sources(adios2 PRIVATE mpidummy.cpp) @@ -80,7 +77,6 @@ if(ADIOS_USE_ADIOS1) engine/adios1/ADIOS1Reader.cpp engine/adios1/ADIOS1Writer.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_ADIOS1) target_link_libraries(adios2 PRIVATE adios1::adios) endif() @@ -103,16 +99,17 @@ if(ADIOS_USE_HDF5) engine/hdf5/HDF5ReaderP.cpp engine/hdf5/HDF5WriterP.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_HDF5) target_link_libraries(adios2 PRIVATE ${HDF5_C_LIBRARIES}) endif() # Main header when using the build directory set(ADIOS_INCLUDE_DIR "${ADIOS_SOURCE_DIR}/source") +set(ADIOS_CONFIG_DIR "${ADIOS_BINARY_DIR}") configure_file(adios2.h.in ${ADIOS_BINARY_DIR}/adios2.h) # Header installation set(ADIOS_INCLUDE_DIR "adios2") +set(ADIOS_CONFIG_DIR "adios2") configure_file(adios2.h.in ${ADIOS_BINARY_DIR}/adios2.install.h) install( FILES ${ADIOS_BINARY_DIR}/adios2.install.h @@ -120,7 +117,9 @@ install( RENAME adios2.h ) install( - FILES ADIOS.h ADIOS.inl ADIOSMacros.h ADIOS_MPI.h ADIOSTypes.h mpidummy.h + FILES + ADIOS.h ADIOS.inl ADIOSMacros.h ADIOS_MPI.h ADIOSTypes.h mpidummy.h + ${ADIOS_BINARY_DIR}/ADIOSConfig.h DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2 ) install( diff --git a/source/adios2.h.in b/source/adios2.h.in index 6a0a8674b..6c2a580d8 100644 --- a/source/adios2.h.in +++ b/source/adios2.h.in @@ -6,6 +6,7 @@ #ifndef ADIOS2_H_ #define ADIOS2_H_ +#include "@ADIOS_CONFIG_DIR@/ADIOSConfig.h" #include "@ADIOS_INCLUDE_DIR@/ADIOS.h" #include "@ADIOS_INCLUDE_DIR@/ADIOSTypes.h" #include "@ADIOS_INCLUDE_DIR@/core/Method.h" diff --git a/source/capsule/heap/STLVector.h b/source/capsule/heap/STLVector.h index 18c7f348d..019e92a59 100644 --- a/source/capsule/heap/STLVector.h +++ b/source/capsule/heap/STLVector.h @@ -15,6 +15,7 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "core/Capsule.h" namespace adios diff --git a/source/capsule/shmem/ShmSystemV.h b/source/capsule/shmem/ShmSystemV.h index 2e3a14c5b..cceac2266 100644 --- a/source/capsule/shmem/ShmSystemV.h +++ b/source/capsule/shmem/ShmSystemV.h @@ -5,6 +5,7 @@ #include <sys/ipc.h> #include <sys/types.h> +#include "ADIOSConfig.h" #include "core/Capsule.h" namespace adios diff --git a/source/core/Attribute.h b/source/core/Attribute.h index d1384d228..fea3b0bed 100644 --- a/source/core/Attribute.h +++ b/source/core/Attribute.h @@ -15,6 +15,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Capsule.h b/source/core/Capsule.h index 609aab847..896ddbaf4 100644 --- a/source/core/Capsule.h +++ b/source/core/Capsule.h @@ -15,6 +15,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Engine.h b/source/core/Engine.h index 1b1e547be..6d9bc8c20 100644 --- a/source/core/Engine.h +++ b/source/core/Engine.h @@ -21,16 +21,16 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" - -#include "../ADIOS.h" -#include "../ADIOSTypes.h" -#include "Capsule.h" -#include "Method.h" -#include "Transform.h" -#include "Transport.h" -#include "Variable.h" -#include "VariableCompound.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "ADIOS.h" +#include "ADIOSTypes.h" +#include "core/Capsule.h" +#include "core/Method.h" +#include "core/Transform.h" +#include "core/Transport.h" +#include "core/Variable.h" +#include "core/VariableCompound.h" namespace adios { diff --git a/source/core/IOChrono.h b/source/core/IOChrono.h index da668822b..489c214aa 100644 --- a/source/core/IOChrono.h +++ b/source/core/IOChrono.h @@ -15,7 +15,8 @@ #include <vector> /// \endcond -#include "Timer.h" +#include "ADIOSConfig.h" +#include "core/Timer.h" namespace adios { diff --git a/source/core/Method.h b/source/core/Method.h index 27efc64ed..9c415e9d6 100644 --- a/source/core/Method.h +++ b/source/core/Method.h @@ -17,8 +17,9 @@ #include <vector> /// \endcond -#include "../ADIOSTypes.h" -#include "adiosFunctions.h" +#include "ADIOSConfig.h" +#include "ADIOSTypes.h" +#include "core/adiosFunctions.h" namespace adios { diff --git a/source/core/Selection.h b/source/core/Selection.h index 187ea0eda..e6c8ac2ff 100644 --- a/source/core/Selection.h +++ b/source/core/Selection.h @@ -33,6 +33,8 @@ #ifndef __ADIOS_SELECTION_H__ #define __ADIOS_SELECTION_H__ +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/SelectionBoundingBox.h b/source/core/SelectionBoundingBox.h index fb991720c..f9fec44d2 100644 --- a/source/core/SelectionBoundingBox.h +++ b/source/core/SelectionBoundingBox.h @@ -12,7 +12,8 @@ #include <vector> -#include "Selection.h" +#include "ADIOSConfig.h" +#include "core/Selection.h" namespace adios { diff --git a/source/core/SelectionPoints.h b/source/core/SelectionPoints.h index 981460290..f0da44f3b 100644 --- a/source/core/SelectionPoints.h +++ b/source/core/SelectionPoints.h @@ -12,7 +12,8 @@ #include <vector> -#include "Selection.h" +#include "ADIOSConfig.h" +#include "core/Selection.h" namespace adios { diff --git a/source/core/Support.h b/source/core/Support.h index 6284f52cb..51efeb1b2 100644 --- a/source/core/Support.h +++ b/source/core/Support.h @@ -17,6 +17,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Timer.h b/source/core/Timer.h index 62b7b8cfe..6c371fa27 100644 --- a/source/core/Timer.h +++ b/source/core/Timer.h @@ -16,7 +16,8 @@ #include <string> /// \endcond -#include "Support.h" +#include "ADIOSConfig.h" +#include "core/Support.h" namespace adios { diff --git a/source/core/Transform.h b/source/core/Transform.h index c133c146d..d98bbd975 100644 --- a/source/core/Transform.h +++ b/source/core/Transform.h @@ -16,6 +16,8 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Transport.h b/source/core/Transport.h index 4d90414ca..ae55dc71f 100644 --- a/source/core/Transport.h +++ b/source/core/Transport.h @@ -16,8 +16,9 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" -#include "IOChrono.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "core/IOChrono.h" namespace adios { diff --git a/source/core/Variable.h b/source/core/Variable.h index be5fc5675..30abdff35 100644 --- a/source/core/Variable.h +++ b/source/core/Variable.h @@ -18,8 +18,9 @@ #include <vector> /// \endcond -#include "Transform.h" -#include "VariableBase.h" +#include "ADIOSConfig.h" +#include "core/Transform.h" +#include "core/VariableBase.h" namespace adios { diff --git a/source/core/VariableBase.h b/source/core/VariableBase.h index e05afd69a..6f84e6003 100644 --- a/source/core/VariableBase.h +++ b/source/core/VariableBase.h @@ -19,9 +19,10 @@ #include <vector> /// \endcond -#include "SelectionBoundingBox.h" -#include "adiosFunctions.h" -#include "adiosTemplates.h" +#include "ADIOSConfig.h" +#include "core/SelectionBoundingBox.h" +#include "core/adiosFunctions.h" +#include "core/adiosTemplates.h" namespace adios { diff --git a/source/core/VariableCompound.h b/source/core/VariableCompound.h index 9f3ceeebe..4df5344d3 100644 --- a/source/core/VariableCompound.h +++ b/source/core/VariableCompound.h @@ -11,7 +11,8 @@ #ifndef VARIABLECOMPOUND_H_ #define VARIABLECOMPOUND_H_ -#include "VariableBase.h" +#include "ADIOSConfig.h" +#include "core/VariableBase.h" namespace adios { diff --git a/source/core/adiosFunctions.cpp b/source/core/adiosFunctions.cpp index d2a84b45f..965967852 100644 --- a/source/core/adiosFunctions.cpp +++ b/source/core/adiosFunctions.cpp @@ -26,7 +26,7 @@ #include "core/Support.h" #include "core/adiosFunctions.h" -#ifdef ADIOS_HAVE_BZIP2 +#ifdef ADIOS2_HAVE_BZIP2 #include "transform/BZip2.h" #endif @@ -539,7 +539,7 @@ void SetTransformsHelper(const std::vector<std::string> &transformNames, { if (transformMethod == "bzip2") { -#ifdef ADIOS_HAVE_BZIP2 +#ifdef ADIOS2_HAVE_BZIP2 transforms.push_back( std::make_shared<adios::transform::BZip2>()); #endif diff --git a/source/core/adiosFunctions.h b/source/core/adiosFunctions.h index 6b76c96cc..963563347 100644 --- a/source/core/adiosFunctions.h +++ b/source/core/adiosFunctions.h @@ -19,8 +19,9 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" -#include "Transform.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "core/Transform.h" namespace adios { diff --git a/source/core/adiosTemplates.h b/source/core/adiosTemplates.h index 5640c5387..90c8b66b9 100644 --- a/source/core/adiosTemplates.h +++ b/source/core/adiosTemplates.h @@ -21,6 +21,8 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" + namespace adios { /** diff --git a/source/core/capsuleTemplates.h b/source/core/capsuleTemplates.h index 5208b184c..f88a3aaca 100644 --- a/source/core/capsuleTemplates.h +++ b/source/core/capsuleTemplates.h @@ -17,7 +17,8 @@ #include <vector> /// \endcond -#include "Transport.h" +#include "ADIOSConfig.h" +#include "core/Transport.h" namespace adios { diff --git a/source/engine/adios1/ADIOS1Reader.h b/source/engine/adios1/ADIOS1Reader.h index baf55f416..aa8059d7a 100644 --- a/source/engine/adios1/ADIOS1Reader.h +++ b/source/engine/adios1/ADIOS1Reader.h @@ -15,21 +15,14 @@ #include <iostream> //this must go away +#include "ADIOSConfig.h" #include "core/Engine.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios { -#ifndef ADIOS_HAVE_MPI -#define _NOMPI 1 -#endif #include "adios_read_v2.h" // this is adios 1.x header file -#ifndef ADIOS_HAVE_MPI -#undef _NOMPI -#endif class ADIOS1Reader : public Engine { diff --git a/source/engine/adios1/ADIOS1Writer.h b/source/engine/adios1/ADIOS1Writer.h index c13eee782..407605d37 100644 --- a/source/engine/adios1/ADIOS1Writer.h +++ b/source/engine/adios1/ADIOS1Writer.h @@ -13,6 +13,7 @@ #ifndef ADIOS1WRITER_H_ #define ADIOS1WRITER_H_ +#include "ADIOSConfig.h" #include "core/Engine.h" namespace adios diff --git a/source/engine/bp/BPFileReader.h b/source/engine/bp/BPFileReader.h index 538be9fc3..4142e724b 100644 --- a/source/engine/bp/BPFileReader.h +++ b/source/engine/bp/BPFileReader.h @@ -13,8 +13,8 @@ #include <iostream> //this must go away +#include "ADIOSConfig.h" #include "core/Engine.h" - #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/bp/BPFileWriter.h b/source/engine/bp/BPFileWriter.h index 6ab88afa7..5e338f043 100644 --- a/source/engine/bp/BPFileWriter.h +++ b/source/engine/bp/BPFileWriter.h @@ -11,8 +11,8 @@ #ifndef BPFILEWRITER_H_ #define BPFILEWRITER_H_ +#include "ADIOSConfig.h" #include "core/Engine.h" - #include "capsule/heap/STLVector.h" #include "utilities/format/bp1/BP1.h" diff --git a/source/engine/dataman/DataManReader.h b/source/engine/dataman/DataManReader.h index a74adcf64..a163890d3 100644 --- a/source/engine/dataman/DataManReader.h +++ b/source/engine/dataman/DataManReader.h @@ -13,11 +13,10 @@ #include <iostream> //std::cout << Needs to go +#include "ADIOSConfig.h" #include "core/Engine.h" #include "utilities/format/bp1/BP1Writer.h" #include "utilities/realtime/dataman/DataMan.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/dataman/DataManWriter.h b/source/engine/dataman/DataManWriter.h index ba28a5861..2e1b4c220 100644 --- a/source/engine/dataman/DataManWriter.h +++ b/source/engine/dataman/DataManWriter.h @@ -14,11 +14,10 @@ #include <iostream> //std::cout must be removed, only used for hello example #include <unistd.h> //sleep must be removed +#include "ADIOSConfig.h" #include "core/Engine.h" #include "utilities/format/bp1/BP1Writer.h" #include "utilities/realtime/dataman/DataMan.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/hdf5/HDF5WriterP.cpp b/source/engine/hdf5/HDF5WriterP.cpp index 40837346d..cec8d43a4 100644 --- a/source/engine/hdf5/HDF5WriterP.cpp +++ b/source/engine/hdf5/HDF5WriterP.cpp @@ -78,7 +78,7 @@ void HDF5Writer::Init() _plist_id = H5Pcreate(H5P_FILE_ACCESS); -#ifdef ADIOS_HAVE_MPI +#ifdef ADIOS2_HAVE_MPI H5Pset_fapl_mpio(_plist_id, m_MPIComm, MPI_INFO_NULL); #endif @@ -342,7 +342,7 @@ void HDF5Writer::UseHDFWrite(Variable<T> &variable, const T *values, // Create property list for collective dataset write. _plist_id = H5Pcreate(H5P_DATASET_XFER); -#ifdef ADIOS_HAVE_MPI +#ifdef ADIOS2_HAVE_MPI H5Pset_dxpl_mpio(_plist_id, H5FD_MPIO_COLLECTIVE); #endif herr_t status; diff --git a/source/engine/hdf5/HDF5WriterP.h b/source/engine/hdf5/HDF5WriterP.h index 64fc6031c..9975fe526 100644 --- a/source/engine/hdf5/HDF5WriterP.h +++ b/source/engine/hdf5/HDF5WriterP.h @@ -12,13 +12,11 @@ #ifndef HDF5_WRITER_P_H_ #define HDF5_WRITER_P_H_ +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" #include "core/Engine.h" - -// supported capsules #include "capsule/heap/STLVector.h" -#include "ADIOS_MPI.h" - #include <hdf5.h> namespace adios diff --git a/source/mpidummy.h b/source/mpidummy.h index 86122ede8..3803925bc 100644 --- a/source/mpidummy.h +++ b/source/mpidummy.h @@ -19,6 +19,8 @@ #include <sys/types.h> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/transform/BZip2.h b/source/transform/BZip2.h index 57f7cf25d..bf2110880 100644 --- a/source/transform/BZip2.h +++ b/source/transform/BZip2.h @@ -11,6 +11,7 @@ #ifndef BZIP2_H_ #define BZIP2_H_ +#include "ADIOSConfig.h" #include "core/Transform.h" namespace adios diff --git a/source/transport/file/FStream.h b/source/transport/file/FStream.h index 79c6737c4..4bfe0111d 100644 --- a/source/transport/file/FStream.h +++ b/source/transport/file/FStream.h @@ -15,6 +15,7 @@ #include <fstream> /// \endcond +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/FileDescriptor.h b/source/transport/file/FileDescriptor.h index 812bdcadb..f326f6ddd 100644 --- a/source/transport/file/FileDescriptor.h +++ b/source/transport/file/FileDescriptor.h @@ -11,6 +11,7 @@ #ifndef FILEDESCRIPTOR_H_ #define FILEDESCRIPTOR_H_ +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/FilePointer.h b/source/transport/file/FilePointer.h index 0967e400b..28cd2f911 100644 --- a/source/transport/file/FilePointer.h +++ b/source/transport/file/FilePointer.h @@ -15,6 +15,7 @@ #include <stdio.h> // FILE* /// \endcond +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/MPI_File.h b/source/transport/file/MPI_File.h index 445df8200..5cfdd16d6 100644 --- a/source/transport/file/MPI_File.h +++ b/source/transport/file/MPI_File.h @@ -11,9 +11,8 @@ #ifndef MPI_FILE_H_ #define MPI_FILE_H_ -/// \cond EXCLUDE_FROM_DOXYGEN +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" -/// \endcond namespace adios { diff --git a/source/transport/wan/MdtmMan.h b/source/transport/wan/MdtmMan.h index 78f0f92b8..6f718bc36 100644 --- a/source/transport/wan/MdtmMan.h +++ b/source/transport/wan/MdtmMan.h @@ -11,9 +11,9 @@ #ifndef MDTMMAN_H_ #define MDTMMAN_H_ +#include "ADIOSConfig.h" #include "core/Transport.h" #include "external/json.hpp" - #include "utilities/realtime/dataman/DataManBase.h" namespace adios diff --git a/source/utilities/format/bp1/BP1.h b/source/utilities/format/bp1/BP1.h index d1b394088..ed447f8e4 100644 --- a/source/utilities/format/bp1/BP1.h +++ b/source/utilities/format/bp1/BP1.h @@ -11,6 +11,7 @@ #ifndef BP1_H_ #define BP1_H_ +#include "ADIOSConfig.h" #include "utilities/format/bp1/BP1Aggregator.h" #include "utilities/format/bp1/BP1Structs.h" #include "utilities/format/bp1/BP1Writer.h" diff --git a/source/utilities/format/bp1/BP1Aggregator.h b/source/utilities/format/bp1/BP1Aggregator.h index 8682ba62b..23d2736a5 100644 --- a/source/utilities/format/bp1/BP1Aggregator.h +++ b/source/utilities/format/bp1/BP1Aggregator.h @@ -15,6 +15,7 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" namespace adios diff --git a/source/utilities/format/bp1/BP1Base.h b/source/utilities/format/bp1/BP1Base.h index bb5173103..7f709e4b0 100644 --- a/source/utilities/format/bp1/BP1Base.h +++ b/source/utilities/format/bp1/BP1Base.h @@ -18,7 +18,7 @@ #include <vector> /// \endcond -//#include <queue> //std::priority_queue to be added later +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" #include "core/Transport.h" diff --git a/source/utilities/format/bp1/BP1Structs.h b/source/utilities/format/bp1/BP1Structs.h index 77f22feb8..ce2721288 100644 --- a/source/utilities/format/bp1/BP1Structs.h +++ b/source/utilities/format/bp1/BP1Structs.h @@ -18,6 +18,7 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "core/IOChrono.h" namespace adios diff --git a/source/utilities/format/bp1/BP1Writer.h b/source/utilities/format/bp1/BP1Writer.h index b8876c7f3..aff0b9890 100644 --- a/source/utilities/format/bp1/BP1Writer.h +++ b/source/utilities/format/bp1/BP1Writer.h @@ -17,11 +17,11 @@ #include <cstring> //std::memcpy /// \endcond +#include "ADIOSConfig.h" #include "ADIOSMacros.h" #include "ADIOSTypes.h" #include "utilities/format/bp1/BP1Base.h" #include "utilities/format/bp1/BP1Structs.h" - #include "capsule/heap/STLVector.h" #include "core/Variable.h" #include "core/adiosFunctions.h" diff --git a/source/utilities/realtime/dataman/DataMan.h b/source/utilities/realtime/dataman/DataMan.h index 59640e933..5ce0fc3a2 100644 --- a/source/utilities/realtime/dataman/DataMan.h +++ b/source/utilities/realtime/dataman/DataMan.h @@ -11,6 +11,7 @@ #ifndef DATAMANAGER_H_ #define DATAMANAGER_H_ +#include "ADIOSConfig.h" #include "utilities/realtime/dataman/DataManBase.h" namespace adios -- GitLab