diff --git a/CMakeLists.txt b/CMakeLists.txt index c0d1a206408adb5f2cdbbb74760f84ecce92050e..842a4187b5514e0b994b6c56dfab4c0fc3fc0bab 100644 --- a/CMakeLists.txt +++ b/CMakeLists.txt @@ -78,6 +78,9 @@ option(ADIOS_USE_HDF5 "Enable support for the HDF5 engine" OFF) # platform supports it. set(ADIOS_USE_DataMan ${SHARED_LIBS_SUPPORTED}) +include(GenerateADIOSConfig) +GenerateADIOSConfig(MPI BZip2 ADIOS1 HDF5 DataMan) + #------------------------------------------------------------------------------# # Third party libraries #------------------------------------------------------------------------------# diff --git a/cmake/GenerateADIOSConfig.cmake b/cmake/GenerateADIOSConfig.cmake new file mode 100644 index 0000000000000000000000000000000000000000..41b5b5ef6c68b4c0ccf826514376bab8d6be9328 --- /dev/null +++ b/cmake/GenerateADIOSConfig.cmake @@ -0,0 +1,66 @@ +#------------------------------------------------------------------------------# +# Distributed under the OSI-approved Apache License, Version 2.0. See +# accompanying file Copyright.txt for details. +#------------------------------------------------------------------------------# + +function(GenerateADIOSConfig) + + file(WRITE ${ADIOS_BINARY_DIR}/ADIOSConfig.h +"/* + * Distributed under the OSI-approved Apache License, Version 2.0. See + * accompanying file Copyright.txt for details. + */ + +#ifndef ADIOSCONFIG_H_ +#define ADIOSCONFIG_H_ + +/* ADIOS Version Information */ +#define ADIOS2_VERSION_MAJOR ${ADIOS_VERSION_MAJOR} +#define ADIOS2_VERSION_MINOR ${ADIOS_VERSION_MINOR} +#define ADIOS2_VERSION_PATCH ${ADIOS_VERSION_PATCH} +#define ADIOS2_VERSION ${ADIOS_VERSION} +" ) + + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h " +/* + * ADIOS Build Information: + * + * Compiler: +" ) + foreach(L IN ITEMS C CXX Fortran) + if(NOT CMAKE_${L}_COMPILER) + continue() + endif() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * ${L}: ${CMAKE_${L}_COMPILER}\n" + ) + if(CMAKE_${L}_COMPILER_WRAPPER) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * Wrapper: ${CMAKE_${L}_COMPILER_WRAPPER}\n" + ) + endif() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + " * Id: ${CMAKE_${L}_COMPILER_ID} ${CMAKE_${L}_COMPILER_VERSION}\n" + ) + endforeach() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h " */\n") + + foreach(OPT IN LISTS ARGN) + string(TOUPPER ${OPT} OPT_UPPER) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "\n/* CMake Option: ADIOS_USE_${OPT}=${ADIOS_USE_${OPT}} */\n" + ) + if(ADIOS_USE_${OPT}) + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "#define ADIOS2_HAVE_${OPT_UPPER} 1\n" + ) + else() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "#undef ADIOS2_HAVE_${OPT_UPPER}\n" + ) + endif() + endforeach() + file(APPEND ${ADIOS_BINARY_DIR}/ADIOSConfig.h + "\n#endif /* ADIOSCONFIG_H_ */\n" + ) +endfunction() diff --git a/source/ADIOS.cpp b/source/ADIOS.cpp index a6748445d727ba46117cb65f744b232dfdc18541..19e0e54cf6f5e89b3e0c66446c49f4c7ed00b74f 100644 --- a/source/ADIOS.cpp +++ b/source/ADIOS.cpp @@ -26,17 +26,17 @@ #include "engine/bp/BPFileReader.h" #include "engine/bp/BPFileWriter.h" -#ifdef ADIOS_HAVE_DATAMAN // external dependencies +#ifdef ADIOS2_HAVE_DATAMAN // external dependencies #include "engine/dataman/DataManReader.h" #include "engine/dataman/DataManWriter.h" #endif -#ifdef ADIOS_HAVE_ADIOS1 // external dependencies +#ifdef ADIOS2_HAVE_ADIOS1 // external dependencies #include "engine/adios1/ADIOS1Reader.h" #include "engine/adios1/ADIOS1Writer.h" #endif -#ifdef ADIOS_HAVE_HDF5 // external dependencies +#ifdef ADIOS2_HAVE_HDF5 // external dependencies #include "engine/hdf5/HDF5ReaderP.h" #include "engine/hdf5/HDF5WriterP.h" #endif @@ -154,7 +154,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "DataManWriter") { -#ifdef ADIOS_HAVE_DATAMAN +#ifdef ADIOS2_HAVE_DATAMAN return std::make_shared<DataManWriter>(*this, name, accessMode, mpiComm, method); #else @@ -165,7 +165,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "DataManReader") { -#ifdef ADIOS_HAVE_DATAMAN +#ifdef ADIOS2_HAVE_DATAMAN return std::make_shared<DataManReader>(*this, name, accessMode, mpiComm, method); #else @@ -176,7 +176,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "ADIOS1Writer") { -#ifdef ADIOS_HAVE_ADIOS1 +#ifdef ADIOS2_HAVE_ADIOS1 return std::make_shared<ADIOS1Writer>(*this, name, accessMode, mpiComm, method); #else @@ -193,7 +193,7 @@ std::shared_ptr<Engine> ADIOS::Open(const std::string &name, } else if (type == "HDF5Writer") // -junmin { -#ifdef ADIOS_HAVE_HDF5 +#ifdef ADIOS2_HAVE_HDF5 return std::make_shared<HDF5Writer>(*this, name, accessMode, mpiComm, method); #else diff --git a/source/ADIOS.h b/source/ADIOS.h index e6d0b8caaeda0cf8fc37cdd15af87741a6f4de4c..8b7ac1e115a96a76c5869e453ad67f8dff260d5f 100644 --- a/source/ADIOS.h +++ b/source/ADIOS.h @@ -2,9 +2,10 @@ * Distributed under the OSI-approved Apache License, Version 2.0. See * accompanying file Copyright.txt for details. * - * ADIOS.\ * + * ADIOS.h * Created on: Oct 3, 2016 - * Author: wfg`123 */ + * Author: wfg + */ #ifndef ADIOS_H_ #define ADIOS_H_ @@ -19,9 +20,9 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "ADIOSMacros.h" #include "ADIOS_MPI.h" - #include "ADIOSTypes.h" #include "core/Method.h" #include "core/Support.h" diff --git a/source/ADIOSTypes.h b/source/ADIOSTypes.h index 585a7f680bb1d6df7de6e15fe620363e80b5e13e..a2d52421bf50399df6f7904e522e3b61b4f5faad 100644 --- a/source/ADIOSTypes.h +++ b/source/ADIOSTypes.h @@ -16,6 +16,8 @@ #include <cstdint> #include <type_traits> +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/ADIOS_MPI.h b/source/ADIOS_MPI.h index 1a310f04f7c3208949774a2e6994aa1b5076295f..83b5a212c947bee99c09ebbea730dbe7cf7f68aa 100644 --- a/source/ADIOS_MPI.h +++ b/source/ADIOS_MPI.h @@ -6,10 +6,10 @@ #ifndef ADIOS_MPI_H_ #define ADIOS_MPI_H_ -#ifdef ADIOS_HAVE_MPI -#define OMPI_SKIP_MPICXX 1 // workaround for OpenMPI forcing C++ bindings +#include "ADIOSConfig.h" + +#ifdef ADIOS2_HAVE_MPI #include <mpi.h> -#undef OMPI_SKIP_MPICXX #else #include "mpidummy.h" #endif diff --git a/source/CMakeLists.txt b/source/CMakeLists.txt index e138a98cdd25722664c415c9868638843fee8cf4..67d28164ffb04fca6dedeaafaa5400e61213fae7 100644 --- a/source/CMakeLists.txt +++ b/source/CMakeLists.txt @@ -49,21 +49,18 @@ if(ADIOS_USE_DataMan) utilities/realtime/dataman/DataManBase.cpp utilities/realtime/dataman/DataMan.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_DATAMAN) target_link_libraries(adios2 PRIVATE ${CMAKE_DL_LIBS}) endif() if(ADIOS_USE_BZip2) find_package(BZip2 REQUIRED) target_sources(adios2 PRIVATE transform/BZip2.cpp) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_BZIP2) target_link_libraries(adios2 PRIVATE BZip2::BZip2) endif() if(ADIOS_USE_MPI) find_package(MPI COMPONENTS C REQUIRED) target_include_directories(adios2 PUBLIC ${MPI_C_INCLUDE_PATH}) - target_compile_definitions(adios2 PUBLIC ADIOS_HAVE_MPI) target_link_libraries(adios2 PUBLIC ${MPI_C_LIBRARIES}) else() target_sources(adios2 PRIVATE mpidummy.cpp) @@ -80,7 +77,6 @@ if(ADIOS_USE_ADIOS1) engine/adios1/ADIOS1Reader.cpp engine/adios1/ADIOS1Writer.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_ADIOS1) target_link_libraries(adios2 PRIVATE adios1::adios) endif() @@ -103,16 +99,17 @@ if(ADIOS_USE_HDF5) engine/hdf5/HDF5ReaderP.cpp engine/hdf5/HDF5WriterP.cpp ) - target_compile_definitions(adios2 PRIVATE ADIOS_HAVE_HDF5) target_link_libraries(adios2 PRIVATE ${HDF5_C_LIBRARIES}) endif() # Main header when using the build directory set(ADIOS_INCLUDE_DIR "${ADIOS_SOURCE_DIR}/source") +set(ADIOS_CONFIG_DIR "${ADIOS_BINARY_DIR}") configure_file(adios2.h.in ${ADIOS_BINARY_DIR}/adios2.h) # Header installation set(ADIOS_INCLUDE_DIR "adios2") +set(ADIOS_CONFIG_DIR "adios2") configure_file(adios2.h.in ${ADIOS_BINARY_DIR}/adios2.install.h) install( FILES ${ADIOS_BINARY_DIR}/adios2.install.h @@ -120,7 +117,9 @@ install( RENAME adios2.h ) install( - FILES ADIOS.h ADIOS.inl ADIOSMacros.h ADIOS_MPI.h ADIOSTypes.h mpidummy.h + FILES + ADIOS.h ADIOS.inl ADIOSMacros.h ADIOS_MPI.h ADIOSTypes.h mpidummy.h + ${ADIOS_BINARY_DIR}/ADIOSConfig.h DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}/adios2 ) install( diff --git a/source/adios2.h.in b/source/adios2.h.in index 6a0a8674b400c0be433c5e219d89998088174b60..6c2a580d8865b9d52045834ccf7d4715f433c15b 100644 --- a/source/adios2.h.in +++ b/source/adios2.h.in @@ -6,6 +6,7 @@ #ifndef ADIOS2_H_ #define ADIOS2_H_ +#include "@ADIOS_CONFIG_DIR@/ADIOSConfig.h" #include "@ADIOS_INCLUDE_DIR@/ADIOS.h" #include "@ADIOS_INCLUDE_DIR@/ADIOSTypes.h" #include "@ADIOS_INCLUDE_DIR@/core/Method.h" diff --git a/source/capsule/heap/STLVector.h b/source/capsule/heap/STLVector.h index 18c7f348d2dd84a2688313b7c4e70138c75b4ec7..019e92a59239ba05d402db2574d2cc48604a18c8 100644 --- a/source/capsule/heap/STLVector.h +++ b/source/capsule/heap/STLVector.h @@ -15,6 +15,7 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "core/Capsule.h" namespace adios diff --git a/source/capsule/shmem/ShmSystemV.h b/source/capsule/shmem/ShmSystemV.h index 2e3a14c5b804736b5c2f8d4d5890bc49efde2eba..cceac2266dbc17a5f257e0e45927f35df1b10081 100644 --- a/source/capsule/shmem/ShmSystemV.h +++ b/source/capsule/shmem/ShmSystemV.h @@ -5,6 +5,7 @@ #include <sys/ipc.h> #include <sys/types.h> +#include "ADIOSConfig.h" #include "core/Capsule.h" namespace adios diff --git a/source/core/Attribute.h b/source/core/Attribute.h index d1384d228ff5019a9ad6fcadf7ee76ff736e3595..fea3b0bed01233457489390b367ac3f38e0079d6 100644 --- a/source/core/Attribute.h +++ b/source/core/Attribute.h @@ -15,6 +15,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Capsule.h b/source/core/Capsule.h index 609aab8471b21ca8178d91f0e6c64127f9f024d3..896ddbaf4e40ca30285a20a95ab66bf27f420068 100644 --- a/source/core/Capsule.h +++ b/source/core/Capsule.h @@ -15,6 +15,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Engine.h b/source/core/Engine.h index 1b1e547be040a6e4d0efd84765db6bcffefd96dd..6d9bc8c2021f85e9562b6c300635e4af26b1b08c 100644 --- a/source/core/Engine.h +++ b/source/core/Engine.h @@ -21,16 +21,16 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" - -#include "../ADIOS.h" -#include "../ADIOSTypes.h" -#include "Capsule.h" -#include "Method.h" -#include "Transform.h" -#include "Transport.h" -#include "Variable.h" -#include "VariableCompound.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "ADIOS.h" +#include "ADIOSTypes.h" +#include "core/Capsule.h" +#include "core/Method.h" +#include "core/Transform.h" +#include "core/Transport.h" +#include "core/Variable.h" +#include "core/VariableCompound.h" namespace adios { diff --git a/source/core/IOChrono.h b/source/core/IOChrono.h index da668822b3d02198014f9731a5f524e768385c06..489c214aa984475460c188c952b51e520f9fefaa 100644 --- a/source/core/IOChrono.h +++ b/source/core/IOChrono.h @@ -15,7 +15,8 @@ #include <vector> /// \endcond -#include "Timer.h" +#include "ADIOSConfig.h" +#include "core/Timer.h" namespace adios { diff --git a/source/core/Method.h b/source/core/Method.h index 27efc64edb3d20f3767d9d47e727a59141c874d9..9c415e9d60254052ddc5cc4ec4b96c636c738c02 100644 --- a/source/core/Method.h +++ b/source/core/Method.h @@ -17,8 +17,9 @@ #include <vector> /// \endcond -#include "../ADIOSTypes.h" -#include "adiosFunctions.h" +#include "ADIOSConfig.h" +#include "ADIOSTypes.h" +#include "core/adiosFunctions.h" namespace adios { diff --git a/source/core/Selection.h b/source/core/Selection.h index 187ea0eda642b81a20981b199ab34d984252e2a4..e6c8ac2ff394623a5e739b2b00f130a721ef2f79 100644 --- a/source/core/Selection.h +++ b/source/core/Selection.h @@ -33,6 +33,8 @@ #ifndef __ADIOS_SELECTION_H__ #define __ADIOS_SELECTION_H__ +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/SelectionBoundingBox.h b/source/core/SelectionBoundingBox.h index fb991720cb4cac711ff1961cdfd6f57f9199e585..f9fec44d289f081e4cdd73b57a3661365faf3060 100644 --- a/source/core/SelectionBoundingBox.h +++ b/source/core/SelectionBoundingBox.h @@ -12,7 +12,8 @@ #include <vector> -#include "Selection.h" +#include "ADIOSConfig.h" +#include "core/Selection.h" namespace adios { diff --git a/source/core/SelectionPoints.h b/source/core/SelectionPoints.h index 981460290eae0817850dda8564b90aa304cfc58e..f0da44f3b35b66a4812d9ed75f67985e46006a81 100644 --- a/source/core/SelectionPoints.h +++ b/source/core/SelectionPoints.h @@ -12,7 +12,8 @@ #include <vector> -#include "Selection.h" +#include "ADIOSConfig.h" +#include "core/Selection.h" namespace adios { diff --git a/source/core/Support.h b/source/core/Support.h index 6284f52cba877082bdca19c77ef21f7f64aafa28..51efeb1b208b7bff5b0f3075cb3e2d59e3b848e3 100644 --- a/source/core/Support.h +++ b/source/core/Support.h @@ -17,6 +17,8 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Timer.h b/source/core/Timer.h index 62b7b8cfee7d12df993a71f81ea0161f7654f30a..6c371fa277df3ca059e40618d3c8fb0e97c42520 100644 --- a/source/core/Timer.h +++ b/source/core/Timer.h @@ -16,7 +16,8 @@ #include <string> /// \endcond -#include "Support.h" +#include "ADIOSConfig.h" +#include "core/Support.h" namespace adios { diff --git a/source/core/Transform.h b/source/core/Transform.h index c133c146d7a9fc6be8fc944f38270bd66c9b393b..d98bbd97549864fe6e75ffdb0f9fc789367b8021 100644 --- a/source/core/Transform.h +++ b/source/core/Transform.h @@ -16,6 +16,8 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/core/Transport.h b/source/core/Transport.h index 4d90414ca582374e2593fbd7d525a64af9181e3c..ae55dc71f312eb554faa653cc28631aa1f3d48db 100644 --- a/source/core/Transport.h +++ b/source/core/Transport.h @@ -16,8 +16,9 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" -#include "IOChrono.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "core/IOChrono.h" namespace adios { diff --git a/source/core/Variable.h b/source/core/Variable.h index be5fc56750ef12328e00650ee5d7039fd6e11ffa..30abdff35875939ab140cea60660a82b480fa8a4 100644 --- a/source/core/Variable.h +++ b/source/core/Variable.h @@ -18,8 +18,9 @@ #include <vector> /// \endcond -#include "Transform.h" -#include "VariableBase.h" +#include "ADIOSConfig.h" +#include "core/Transform.h" +#include "core/VariableBase.h" namespace adios { diff --git a/source/core/VariableBase.h b/source/core/VariableBase.h index e05afd69abb172541c4c0e5a9788745538a7fe9e..6f84e6003cdaa077f605f4af5ca6d3316fc40b09 100644 --- a/source/core/VariableBase.h +++ b/source/core/VariableBase.h @@ -19,9 +19,10 @@ #include <vector> /// \endcond -#include "SelectionBoundingBox.h" -#include "adiosFunctions.h" -#include "adiosTemplates.h" +#include "ADIOSConfig.h" +#include "core/SelectionBoundingBox.h" +#include "core/adiosFunctions.h" +#include "core/adiosTemplates.h" namespace adios { diff --git a/source/core/VariableCompound.h b/source/core/VariableCompound.h index 9f3ceeebea38e900146c26af282c7c5cabc89976..4df5344d311bba65844d64a4d685950b3245f692 100644 --- a/source/core/VariableCompound.h +++ b/source/core/VariableCompound.h @@ -11,7 +11,8 @@ #ifndef VARIABLECOMPOUND_H_ #define VARIABLECOMPOUND_H_ -#include "VariableBase.h" +#include "ADIOSConfig.h" +#include "core/VariableBase.h" namespace adios { diff --git a/source/core/adiosFunctions.cpp b/source/core/adiosFunctions.cpp index d2a84b45f37a24be0ecf82fa460565a806d4d0dc..96596785236bdefb7ad1113a4952ee29f5ed0294 100644 --- a/source/core/adiosFunctions.cpp +++ b/source/core/adiosFunctions.cpp @@ -26,7 +26,7 @@ #include "core/Support.h" #include "core/adiosFunctions.h" -#ifdef ADIOS_HAVE_BZIP2 +#ifdef ADIOS2_HAVE_BZIP2 #include "transform/BZip2.h" #endif @@ -539,7 +539,7 @@ void SetTransformsHelper(const std::vector<std::string> &transformNames, { if (transformMethod == "bzip2") { -#ifdef ADIOS_HAVE_BZIP2 +#ifdef ADIOS2_HAVE_BZIP2 transforms.push_back( std::make_shared<adios::transform::BZip2>()); #endif diff --git a/source/core/adiosFunctions.h b/source/core/adiosFunctions.h index 6b76c96cc2a69540d04eaf36d2d570ee64a26a0d..96356334730d7c66e455a9adab4f1571c4a8d161 100644 --- a/source/core/adiosFunctions.h +++ b/source/core/adiosFunctions.h @@ -19,8 +19,9 @@ #include <vector> /// \endcond -#include "../ADIOS_MPI.h" -#include "Transform.h" +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" +#include "core/Transform.h" namespace adios { diff --git a/source/core/adiosTemplates.h b/source/core/adiosTemplates.h index 5640c538758c70c62511f68443153dafb34f80be..90c8b66b9b2ef06b36b00e0c3f701c8a1d822145 100644 --- a/source/core/adiosTemplates.h +++ b/source/core/adiosTemplates.h @@ -21,6 +21,8 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" + namespace adios { /** diff --git a/source/core/capsuleTemplates.h b/source/core/capsuleTemplates.h index 5208b184c856f5bad2d5b8d75281a739ec59ac9a..f88a3aacabf9a607105eb332624c0b4aaeff804a 100644 --- a/source/core/capsuleTemplates.h +++ b/source/core/capsuleTemplates.h @@ -17,7 +17,8 @@ #include <vector> /// \endcond -#include "Transport.h" +#include "ADIOSConfig.h" +#include "core/Transport.h" namespace adios { diff --git a/source/engine/adios1/ADIOS1Reader.h b/source/engine/adios1/ADIOS1Reader.h index baf55f4166b70ef934b077de1d79e569cc43ed3b..aa8059d7a2debb661da6d8ef4f7cc2ef62a58abd 100644 --- a/source/engine/adios1/ADIOS1Reader.h +++ b/source/engine/adios1/ADIOS1Reader.h @@ -15,21 +15,14 @@ #include <iostream> //this must go away +#include "ADIOSConfig.h" #include "core/Engine.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios { -#ifndef ADIOS_HAVE_MPI -#define _NOMPI 1 -#endif #include "adios_read_v2.h" // this is adios 1.x header file -#ifndef ADIOS_HAVE_MPI -#undef _NOMPI -#endif class ADIOS1Reader : public Engine { diff --git a/source/engine/adios1/ADIOS1Writer.h b/source/engine/adios1/ADIOS1Writer.h index c13eee78201bc3b797e7bbe654c1fe7d1a3e9be1..407605d37ba82c1f1c898fd97695192d1fafd12c 100644 --- a/source/engine/adios1/ADIOS1Writer.h +++ b/source/engine/adios1/ADIOS1Writer.h @@ -13,6 +13,7 @@ #ifndef ADIOS1WRITER_H_ #define ADIOS1WRITER_H_ +#include "ADIOSConfig.h" #include "core/Engine.h" namespace adios diff --git a/source/engine/bp/BPFileReader.h b/source/engine/bp/BPFileReader.h index 538be9fc3b446c5b09cd798a4c640c09d51813d2..4142e724b0e7489ccfa1a7e4239edb954e8e43a0 100644 --- a/source/engine/bp/BPFileReader.h +++ b/source/engine/bp/BPFileReader.h @@ -13,8 +13,8 @@ #include <iostream> //this must go away +#include "ADIOSConfig.h" #include "core/Engine.h" - #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/bp/BPFileWriter.h b/source/engine/bp/BPFileWriter.h index 6ab88afa79d8f349fed9f2e30de8ad468de5e39a..5e338f043e4f224f50c8e78cd81415150be35bdf 100644 --- a/source/engine/bp/BPFileWriter.h +++ b/source/engine/bp/BPFileWriter.h @@ -11,8 +11,8 @@ #ifndef BPFILEWRITER_H_ #define BPFILEWRITER_H_ +#include "ADIOSConfig.h" #include "core/Engine.h" - #include "capsule/heap/STLVector.h" #include "utilities/format/bp1/BP1.h" diff --git a/source/engine/dataman/DataManReader.h b/source/engine/dataman/DataManReader.h index a74adcf64c9f4201ac99f07bfab2d1e63467b070..a163890d39c4428112d2b08fb7f368dc723ba0ec 100644 --- a/source/engine/dataman/DataManReader.h +++ b/source/engine/dataman/DataManReader.h @@ -13,11 +13,10 @@ #include <iostream> //std::cout << Needs to go +#include "ADIOSConfig.h" #include "core/Engine.h" #include "utilities/format/bp1/BP1Writer.h" #include "utilities/realtime/dataman/DataMan.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/dataman/DataManWriter.h b/source/engine/dataman/DataManWriter.h index ba28a58610eef7ae22dd077eb761a2836e0a5388..2e1b4c220c2b8591a37e7f5787a08195ad3de315 100644 --- a/source/engine/dataman/DataManWriter.h +++ b/source/engine/dataman/DataManWriter.h @@ -14,11 +14,10 @@ #include <iostream> //std::cout must be removed, only used for hello example #include <unistd.h> //sleep must be removed +#include "ADIOSConfig.h" #include "core/Engine.h" #include "utilities/format/bp1/BP1Writer.h" #include "utilities/realtime/dataman/DataMan.h" - -// supported capsules #include "capsule/heap/STLVector.h" namespace adios diff --git a/source/engine/hdf5/HDF5WriterP.cpp b/source/engine/hdf5/HDF5WriterP.cpp index 40837346de7f92b704a63217816ca0ce8906334a..cec8d43a4d751de43268431d6b1d98d359059662 100644 --- a/source/engine/hdf5/HDF5WriterP.cpp +++ b/source/engine/hdf5/HDF5WriterP.cpp @@ -78,7 +78,7 @@ void HDF5Writer::Init() _plist_id = H5Pcreate(H5P_FILE_ACCESS); -#ifdef ADIOS_HAVE_MPI +#ifdef ADIOS2_HAVE_MPI H5Pset_fapl_mpio(_plist_id, m_MPIComm, MPI_INFO_NULL); #endif @@ -342,7 +342,7 @@ void HDF5Writer::UseHDFWrite(Variable<T> &variable, const T *values, // Create property list for collective dataset write. _plist_id = H5Pcreate(H5P_DATASET_XFER); -#ifdef ADIOS_HAVE_MPI +#ifdef ADIOS2_HAVE_MPI H5Pset_dxpl_mpio(_plist_id, H5FD_MPIO_COLLECTIVE); #endif herr_t status; diff --git a/source/engine/hdf5/HDF5WriterP.h b/source/engine/hdf5/HDF5WriterP.h index 64fc6031ceaf523e31fd4d02fa505cacf46f666d..9975fe5266e241b3ac902afca3f2f0a9c819dd1b 100644 --- a/source/engine/hdf5/HDF5WriterP.h +++ b/source/engine/hdf5/HDF5WriterP.h @@ -12,13 +12,11 @@ #ifndef HDF5_WRITER_P_H_ #define HDF5_WRITER_P_H_ +#include "ADIOSConfig.h" +#include "ADIOS_MPI.h" #include "core/Engine.h" - -// supported capsules #include "capsule/heap/STLVector.h" -#include "ADIOS_MPI.h" - #include <hdf5.h> namespace adios diff --git a/source/mpidummy.h b/source/mpidummy.h index 86122ede8af34481a719166a9df32f9cddacd835..3803925bc33a0e2f4555bf9172e3d8f1313963ec 100644 --- a/source/mpidummy.h +++ b/source/mpidummy.h @@ -19,6 +19,8 @@ #include <sys/types.h> /// \endcond +#include "ADIOSConfig.h" + namespace adios { diff --git a/source/transform/BZip2.h b/source/transform/BZip2.h index 57f7cf25d95aec06dbf8e91b21c6df518fc481ae..bf2110880a7cc0d3311a942fbc0e8231c4512b2b 100644 --- a/source/transform/BZip2.h +++ b/source/transform/BZip2.h @@ -11,6 +11,7 @@ #ifndef BZIP2_H_ #define BZIP2_H_ +#include "ADIOSConfig.h" #include "core/Transform.h" namespace adios diff --git a/source/transport/file/FStream.h b/source/transport/file/FStream.h index 79c6737c460b20cf4af7cdcc905bab7bbd865283..4bfe0111dbe72b92ebb8aa9f3b2c521f23b17ea5 100644 --- a/source/transport/file/FStream.h +++ b/source/transport/file/FStream.h @@ -15,6 +15,7 @@ #include <fstream> /// \endcond +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/FileDescriptor.h b/source/transport/file/FileDescriptor.h index 812bdcadb6e8591665c4c4f0505121db715e58db..f326f6ddddf36897d2d290b4300dbace7341459a 100644 --- a/source/transport/file/FileDescriptor.h +++ b/source/transport/file/FileDescriptor.h @@ -11,6 +11,7 @@ #ifndef FILEDESCRIPTOR_H_ #define FILEDESCRIPTOR_H_ +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/FilePointer.h b/source/transport/file/FilePointer.h index 0967e400b4cfe31009c092446617acecc5acd9f6..28cd2f9110067d0aba355c32738fc4ef94014bf5 100644 --- a/source/transport/file/FilePointer.h +++ b/source/transport/file/FilePointer.h @@ -15,6 +15,7 @@ #include <stdio.h> // FILE* /// \endcond +#include "ADIOSConfig.h" #include "core/Transport.h" namespace adios diff --git a/source/transport/file/MPI_File.h b/source/transport/file/MPI_File.h index 445df82000acfdf41b31a0404b2355c2b05a7962..5cfdd16d6039771f041c1e2bac1430a33e51b898 100644 --- a/source/transport/file/MPI_File.h +++ b/source/transport/file/MPI_File.h @@ -11,9 +11,8 @@ #ifndef MPI_FILE_H_ #define MPI_FILE_H_ -/// \cond EXCLUDE_FROM_DOXYGEN +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" -/// \endcond namespace adios { diff --git a/source/transport/wan/MdtmMan.h b/source/transport/wan/MdtmMan.h index 78f0f92b8aadbc28d4c3858286d4392979151ee0..6f718bc36b36c38075274689ee2f7ad7bb23d0b5 100644 --- a/source/transport/wan/MdtmMan.h +++ b/source/transport/wan/MdtmMan.h @@ -11,9 +11,9 @@ #ifndef MDTMMAN_H_ #define MDTMMAN_H_ +#include "ADIOSConfig.h" #include "core/Transport.h" #include "external/json.hpp" - #include "utilities/realtime/dataman/DataManBase.h" namespace adios diff --git a/source/utilities/format/bp1/BP1.h b/source/utilities/format/bp1/BP1.h index d1b394088ed27a85e9d7a9cd2a448a9cbd986146..ed447f8e4e90178f455f47f8f8b3525810648ec5 100644 --- a/source/utilities/format/bp1/BP1.h +++ b/source/utilities/format/bp1/BP1.h @@ -11,6 +11,7 @@ #ifndef BP1_H_ #define BP1_H_ +#include "ADIOSConfig.h" #include "utilities/format/bp1/BP1Aggregator.h" #include "utilities/format/bp1/BP1Structs.h" #include "utilities/format/bp1/BP1Writer.h" diff --git a/source/utilities/format/bp1/BP1Aggregator.h b/source/utilities/format/bp1/BP1Aggregator.h index 8682ba62b84c625b94fe28e93776e513310985d0..23d2736a5dd2786660c0ab7bc14973e8af4343e4 100644 --- a/source/utilities/format/bp1/BP1Aggregator.h +++ b/source/utilities/format/bp1/BP1Aggregator.h @@ -15,6 +15,7 @@ #include <string> /// \endcond +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" namespace adios diff --git a/source/utilities/format/bp1/BP1Base.h b/source/utilities/format/bp1/BP1Base.h index bb5173103545477c79111b1abc38436cdb21bf46..7f709e4b0e03169ee37f4b56b3725258f770d619 100644 --- a/source/utilities/format/bp1/BP1Base.h +++ b/source/utilities/format/bp1/BP1Base.h @@ -18,7 +18,7 @@ #include <vector> /// \endcond -//#include <queue> //std::priority_queue to be added later +#include "ADIOSConfig.h" #include "ADIOS_MPI.h" #include "core/Transport.h" diff --git a/source/utilities/format/bp1/BP1Structs.h b/source/utilities/format/bp1/BP1Structs.h index 77f22feb80510bc1acf458c633a7bb39b99d8fac..ce2721288208afe59c4f2278a1ad604d66d39802 100644 --- a/source/utilities/format/bp1/BP1Structs.h +++ b/source/utilities/format/bp1/BP1Structs.h @@ -18,6 +18,7 @@ #include <vector> /// \endcond +#include "ADIOSConfig.h" #include "core/IOChrono.h" namespace adios diff --git a/source/utilities/format/bp1/BP1Writer.h b/source/utilities/format/bp1/BP1Writer.h index b8876c7f34b0e671d5fa42f25d2e013f7cef806f..aff0b98907cc13562cc5f79082deab38e1f4bbc1 100644 --- a/source/utilities/format/bp1/BP1Writer.h +++ b/source/utilities/format/bp1/BP1Writer.h @@ -17,11 +17,11 @@ #include <cstring> //std::memcpy /// \endcond +#include "ADIOSConfig.h" #include "ADIOSMacros.h" #include "ADIOSTypes.h" #include "utilities/format/bp1/BP1Base.h" #include "utilities/format/bp1/BP1Structs.h" - #include "capsule/heap/STLVector.h" #include "core/Variable.h" #include "core/adiosFunctions.h" diff --git a/source/utilities/realtime/dataman/DataMan.h b/source/utilities/realtime/dataman/DataMan.h index 59640e933fd9e1a5dc12800a2b3e924ff42bf92c..5ce0fc3a20f149c44c73e2837f8403bda2ffff0d 100644 --- a/source/utilities/realtime/dataman/DataMan.h +++ b/source/utilities/realtime/dataman/DataMan.h @@ -11,6 +11,7 @@ #ifndef DATAMANAGER_H_ #define DATAMANAGER_H_ +#include "ADIOSConfig.h" #include "utilities/realtime/dataman/DataManBase.h" namespace adios