diff --git a/examples/heatTransfer/write/IO_ph5.cpp b/examples/heatTransfer/write/IO_ph5.cpp index 4d892157771ae2a4adecf99654c393c7f19355c6..841501b8db780b9d6f80e4870041c246cb00a0a0 100644 --- a/examples/heatTransfer/write/IO_ph5.cpp +++ b/examples/heatTransfer/write/IO_ph5.cpp @@ -48,10 +48,9 @@ HDF5NativeWriter::HDF5NativeWriter(const std::string &fileName) { m_FilePropertyListId = H5Pcreate(H5P_FILE_ACCESS); -#ifdef ADIOS2_HAVE_MPI // read a file collectively H5Pset_fapl_mpio(m_FilePropertyListId, MPI_COMM_WORLD, MPI_INFO_NULL); -#endif + m_FileId = H5Fcreate(fileName.c_str(), H5F_ACC_TRUNC, H5P_DEFAULT, m_FilePropertyListId); @@ -167,9 +166,8 @@ void HDF5NativeWriter::WriteSimple(const std::string &varName, int dimSize, // Create property list for collective dataset write. hid_t plistID = H5Pcreate(H5P_DATASET_XFER); -#ifdef ADIOS2_HAVE_MPI H5Pset_dxpl_mpio(plistID, H5FD_MPIO_COLLECTIVE); -#endif + herr_t status; status = H5Dwrite(dsetID, h5Type, memSpace, fileSpace, plistID, data); @@ -195,6 +193,11 @@ IO::IO(const Settings &s, MPI_Comm comm) { m_outputfilename = s.outputfile + ".h5"; + if (s.outputfile[0]=='0') { + std::cout<<" no writer. "<<std::endl; + h5writer = nullptr; + return; + } h5writer = std::make_shared<HDF5NativeWriter>(m_outputfilename); if (h5writer == nullptr) @@ -203,13 +206,18 @@ IO::IO(const Settings &s, MPI_Comm comm) IO::~IO() { - h5writer->Close(); + if (h5writer != nullptr) { + h5writer->Close(); + } // delete h5writer; } void IO::write(int step, const HeatTransfer &ht, const Settings &s, MPI_Comm comm) { + if (h5writer == nullptr) { + return; + } std::vector<hsize_t> dims = {s.gndx, s.gndy}; std::vector<hsize_t> offset = {s.offsx, s.offsy}; std::vector<hsize_t> count = {s.ndx, s.ndy}; @@ -217,6 +225,7 @@ void IO::write(int step, const HeatTransfer &ht, const Settings &s, h5writer->WriteSimple("T", 2, ht.data_noghost().data(), H5T_NATIVE_DOUBLE, dims.data(), offset.data(), count.data()); h5writer->WriteScalar("gndy", &(s.gndy), H5T_NATIVE_UINT); + h5writer->WriteScalar("gndx", &(s.gndx), H5T_NATIVE_UINT); h5writer->Advance(); }