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#!/bin/csh -f
# file: diag140804.csh
# Updated: 2014/08/04

unset echo verbose
setenv DIAG_VERSION 140804  # version number YYMMDD


#******************************************************************
#  C-shell control script for AMWG Diagnostics Package.           *
#  Written by Dr. Mark J. Stevens, 2001-2003.                     *
#  Updated by many people                                         *                                    
#  e-mail: hannay@ucar.edu   phone: 303-497-1327                  *
#                                                                 *
#  - Please see the AMWG diagnostics package webpage at:          *
#  https://www2.cesm.ucar.edu/working-groups/amwg/amwg-diagnostics-package  
#                                                                 *
#  - Subscribe to the ccsm-amwgdiag mailing list:                 *
#  http://mailman.cgd.ucar.edu/mailman/listinfo/ccsm_amwgdiag     *
#  to receive updates from the AMWG diagnostic package.           *
#                                                                 *
#  Implementation of parallel version with Swift sponsored by the *
#  Office of Biological and Environmental Research of the         *
#  U.S. Department of Energy's Office of Science.                 *
#                                                                 *
#******************************************************************
#                                                                
#
#******************************************************************
#                   PLEASE READ THIS                              *
#******************************************************************

# This script can be placed in any directory provided that
# access to the working directory and local directories are 
# available (see below).
#
# Using this script your model output can be compared with
# observations (observed and reanalysis, data) 
# or with another model run. With all the diagnostic sets 
# turned on the package will produce over 600 plots and 
# tables in your working directory. In addition, files are
# produced for the climatological monthly means and the DJF
# and JJA seasonal means, as well as the annual (ANN) means.
# 
# Input file names are of the standard CCSM type and
# they must be in netcdf format. Filenames are of the 
# form YYYY-MM.nc where YYYY are the model years and MM
# are the months, for example 00010-09.nc. The files
# can reside on the Mass Storage System (MSS), if they 
# are on the MSS the script will get them using msrcp.
# If your files are not on the MSS they must be in a local
# directory. 
#
# Normally 5 years of monthly means are used for the
# comparisons, however only 1 year of data will work. 
# The December just prior to the starting year is also
# needed for the DJF seasonal mean, or Jan and Feb of
# the year following the last full year. For example,  
# for 5-year means the following months are needed 
#
# 0000-12.nc      prior december
# 0001-01.nc      first year (must be 0001 or greater)
#  ...
# 0001-12.nc
#  ...
# 0005-01.nc      last year
#  ...
# 0005-12.nc

#--> OR you can do this 
#
# 0001-01.nc      first year (must be 0001 or greater)
#  ...
# 0001-12.nc
#  ...
# 0005-01.nc      last year full year
#  ...
# 0005-12.nc
# 0006-01.nc      following jan
# 0006-02.nc      following feb
#

#******************************************************************
#                       USER MODIFY SECTION                       *
#              Modify the following sections as needed.           *
#******************************************************************

# In the following "test case" refers to the model run to be
# compared with the "control case", which may be model or obs data.

#******************************************************************

#******************************************************************

# *****************
# *** Test case ***
# *****************

# Set the identifying casename and paths for your test case run. 
# The output netcdf files are in: $test_path_history
# The climatology files go in: $test_path_climo
# The diagnostic plots go in: $test_path_diag
# The HPSS path (if files doesn't exist locally): $test_path_HPSS
#
# Don t forget the trailing / when setting the paths

set test_casename  = {{casename}}
set test_filetype = monthly_history 
#set test_filetype = time_series

#set test_path_history =  /glade/scratch/hannay/archive/$test_casename/atm/
#set test_path_climo   =  /glade/scratch/hannay/amwg/climo/$test_casename/ 
#set test_path_diag    =  /glade/scratch/hannay/amwg/diag/$test_casename/
set test_path_history =  $PWD/run/
set test_path_climo   =  $PWD/amwg-stage{{stage}}/
set test_path_diag    =  $PWD/amwg-stage{{stage}}/
set test_path_HPSS    =  $test_path_history

#******************************************************************

# ********************
# *** Control case ***
# ******************** 

# Select the type of control case to be compared with your model
# test case (select one). 

set CNTL = OBS            # observed data (reanalysis etc)
#set CNTL = USER           # user defined model control (see below)

#------------------------------------------------------------------
# FOR CNTL == USER ONLY (otherwise skip this section)

# Set the identifying casename and paths for your control case run. 
# The output netcdf files are in: $cntl_path_history
# The climatology files are in: $cntl_path_climo
# The HPSS path (if files doesn't exist locally): $cntl_path_HPSS
#

# Don t forget the trailing / when setting the paths

set cntl_casename   =  f.e11.F2000C5.f09_f09.control.001
set cntl_filetype = monthly_history 
#set cntl_filetype = time_series

set cntl_path_history = /glade/scratch/hannay/archive/$cntl_casename/atm/hist/ 
set cntl_path_climo   = /glade/scratch/hannay/amwg/climo/$cntl_casename/  
set cntl_path_HPSS    = /CCSM/csm/$cntl_casename/atm/hist/

#******************************************************************

# *********************
# *** Climatologies ***
# ********************* 

# Use these settings if computing climatological means 
# from the local test case data and/or local control case data

#-----------------------------------------------------------------
# Turn on/off the computation of climatologies 
      
set test_compute_climo = 0  # (0=ON,1=OFF) 
set cntl_compute_climo = 1    # (0=ON,1=OFF) 

#-----------------------------------------------------------------

# If computing climatological means for test/cntl case, specify the first 
# year of your data, and the number of years of data to be used.

# First year of data is: $test_first_yr     (must be >= 1)
# Number of years is: $test_nyrs         (must be >= 1)

set test_first_yr = {{first_yr}}       # first year (must be >= 1)
set test_nyrs     = {{nyrs}}           # number of yrs (must be >= 1)

# FOR CNTL == USER ONLY (otherwise skip this section)
# First year of data is: $cntl_first_yr     (must be >= 1)
# Number of years is: $cntl_nyrs         (must be >= 1)

set cntl_first_yr = 2        # first year (must be >= 1)
set cntl_nyrs     = 4        # number of yrs (must be >= 1)

#-----------------------------------------------------------------
# Strip off all the variables that are not required by the AMWG package
# in the computation of the climatology
# set to OFF for running with Chemistry

set strip_off_vars = 0     # (0=ON,1=OFF)

#-----------------------------------------------------------------
# Weight the months by their number of days when computing
# averages for ANN, DJF, JJA. This takes much longer to compute 
# the climatologies. Many users might not care about the small
# differences and leave this turned off.

set weight_months = 0     # (0=ON,1=OFF)

#******************************************************************

# ******************************
# *** Select diagnostic sets ***
# ****************************** 

# Select the diagnostic sets to be done. You can do one at a
# time or as many as you want at one time, or all at once.

set all_sets = 1  # (0=ON,1=OFF)  Do all the CAM sets (1-16)
set set_1  = 0    # (0=ON,1=OFF)  tables of global,regional means
set set_2  = 0    # (0=ON,1=OFF)  implied transport plots 
set set_3  = 1    # (0=ON,1=OFF)  zonal mean line plots
set set_4  = 1    # (0=ON,1=OFF)  vertical zonal mean contour plots
set set_4a = 1    # (0=ON,1=OFF)  vertical zonal mean contour plots
set set_5  = 1    # (0=ON,1=OFF)  2D-field contour plots
set set_6  = 1    # (0=ON,1=OFF)  2D-field vector plots
set set_7  = 1    # (0=ON,1=OFF)  2D-field polar plots
set set_8  = 1    # (0=ON,1=OFF)  annual cycle (vs lat) contour plots
set set_9  = 1    # (0=ON,1=OFF)  DJF-JJA difference plots
set set_10 = 1    # (0=ON,1=OFF)  annual cycle line plots    
set set_11 = 1    # (0=ON,1=OFF)  miscellaneous plots
set set_12 = 1    # (0=selected stations: 1=NONE, 2=ALL stations
set set_13 = 1    # (0=ON,1=OFF)  COSP cloud simulator plots
set set_14 = 1    # (0=ON,1=OFF)  Taylor diagram plots 
set set_15 = 1    # (0=ON,1=OFF)  Annual Cycle Plots for Select stations
set set_16 = 1    # (0=ON,1=OFF)  Budget Terms for Select stations

set all_waccm_sets = 1 # (0=ON,1=OFF)  Do all the WACCM sets
set all_chem_sets = 1 # (0=ON,1=OFF)   Do all the CHEM sets
set wset_1 = 0         # (0=ON,1=OFF)  vertical zonal mean contour plots (log scale)
set cset_1 = 0         # (0=ON,1=OFF)  tables of global budgets 
set cset_2 = 0         # (0=ON,1=OFF)  vertical zonal mean contour plots (log scale)
set cset_3 = 0         # (0=ON,1=OFF)  Ozonesonde comparisions 
set cset_4 = 0         # (0=ON,1=OFF)  Column Ozone/CO Comparisons
set cset_5 = 0         # (0=ON,1=OFF)  NOAA Aircraft comparisons
set cset_6 = 0         # (0=ON,1=OFF)  Emmons Aircraft climatology 
set cset_7 = 0         # (0=ON,1=OFF)  surface comparisons (ozone, co, improve)

# Select the control case to compare against for Taylor Diagrams
# Cam run select cam3_5; coupled run select ccsm3_5  
 
setenv TAYLOR_BASECASE ccsm3_5  # Base case to compare against
				# Options are cam3_5, ccsm3_5
				# They are both fv_1.9x2.5

#******************************************************************

# **************************************
# *** Customize plots (output/style) ***
# ************************************** 

# Select seasonal output to be plotted  
#  four_seasons = 0     # DJF, MAM, JJA, SON, ANN    
#  four_seasons = 1     # DJF, JJA, ANN 
#  four_seasons = 2     # Custom: Select the season you want to be plotted

# Note:  four_seasons is not currently supported for model vs OBS diagnostics.
# if ($CNTL == OBS) then four_seasons is turned OFF.

set four_seasons = 1            # (0=ON; 1=OFF)

#------------------------------------------------------------------
# For four_seasons == 2 (otherwise skip this section)
# Select the seasons you want to be plotted

if ($four_seasons == 2) then
    set plot_ANN_climo = 0       # (0=ON,1=OFF) used by sets 1-7,11 
    set plot_DJF_climo = 0       # (0=ON,1=OFF) used by sets 1,3-7,9,11
    set plot_JJA_climo = 0       # (0=ON,1=OFF) used by sets 1,3-7,9,11
    set plot_MAM_climo = 0       # (0=ON,1=OFF) used by sets 1,3-7,9,11
    set plot_SON_climo = 0       # (0=ON,1=OFF) used by sets 1,3-7,9,11
    set plot_MON_climo = 0       # (0=ON,1=OFF) used by sets 8,10,11,12
endif

#-----------------------------------------------------------------
# Select the output file type and style for plots.

set p_type = ps     # postscript
#set p_type = pdf    # portable document format (ncl ver 4.2.0.a028)
#set p_type = eps    # encapsulated postscript
#set p_type = epsi   # encapsulated postscript with bitmap 
#set p_type = ncgm   # ncar computer graphics metadata

#-------------------------------------------------------------------
# Select the output color type for plots.

 set c_type = COLOR      # color
#set c_type = MONO       # black and white

# If needed select one of the following color schemes,
# you can see the colors by clicking on the links from
# http://www.cgd.ucar.edu/cms/diagnostics

 set color_bar = default           # the usual colors
 set color_bar = blue_red          # blue,red 
#set color_bar = blue_yellow_red   # blue,yellow,red (nice!) 

#----------------------------------------------------------------
# Turn ON/OFF date/time stamp at bottom of plots.
# Leaving this OFF makes the plots larger.

set time_stamp = 1       # (0=ON,1=OFF)

#---------------------------------------------------------------
# Turn ON/OFF tick marks and labels for sets 5,6, and 7
# Turning these OFF make the areas plotted larger, which makes
# the images easier to look at. 

set tick_marks = 1       # (0=ON,1=OFF)
 
#----------------------------------------------------------------
# Use custom case names for the PLOTS instead of the 
# case names encoded in the netcdf files (default). 
# Also useful for publications.

set custom_names = 1     # (0=ON,1=OFF)

# if needed set the names
set test_name = cam3_5_test               # test case name 
set cntl_name = cam3_5_cntl               # control case name

#----------------------------------------------------------------
# Convert output postscript files to GIF, JPG or PNG image files 
# and place them in subdirectories along with html files.
# Then make a tar file of the web pages and GIF,JPG or PNG files.
# On Dataproc and CGD Suns GIF images are smallest since I built
# ImageMagick from source and compiled in the LZW compression.
# On Linux systems JPG will be smallest if you have an rpm or
# binary distribution of ImageMagick (and hence convert) since
# NO LZW compression is the default. Only works if you have
# convert on your system and for postscript files (p_type = ps).
# NOTE: Unless you have rebuilt ImageMagick on your Linux system
# the GIF files can be as large as the postscript plots. I 
# recommend that PNG always be used. The density option can be
# used with convert to make higher resolution images which will
# work better in powerpoint presentations, try density = 150.

set web_pages = 0    # (0=ON,1=OFF)  make images and html files
set delete_ps = 0    # (0=ON,1=OFF)  delete postscript files 
set img_type  = 0    # (0=PNG,1=GIF,2=JPG) select image type
set density   = 85   # pixels/inch, use larger number for higher 
                     # resolution images (default is 85)

#----------------------------------------------------------------
# Save the output netcdf files of the derived variables
# used to make the plots. These are normally deleted 
# after the plots are made. If you want to save the 
# netcdf files for your own uses then switch to ON. 

set save_ncdfs = 1       # (0=ON,1=OFF)
#----------------------------------------------------------------

# Compute whether the means of the test case and control case 
# are significantly different from each other at each grid point.
# Tests are performed only for model-to-model comparisons.  
# REQUIRES at least 10 years of model data for each case.
# Number of years from above (test_nyrs and cntl_nyrs) is used.
# Also set the significance level for the t-test.
 
set significance = 1         # (0=ON,1=OFF)

# if needed set default level
set sig_lvl = 0.05           # level of significance

#******************************************************************

# ***************************
# *** Source code location ***
# *************************** 

# Below is defined the amwg diagnostic package root location 
# on CGD machines (tramhill,...), on old CSIL machines (mirage), 
# on new CSIL machines (geyser),  NERSC (euclid), and  LBNL (lens).   	 
#
# If you are installing the diagnostic package on your computer system. 
# you need to set DIAG_HOME to the root location of the diagnostic code. 
# The code is in $DIAG_HOME/code 
# The obs data in $DIAG_HOME/obs_data
# The cam3.5 data in $DIAG_HOME/cam35_data 

# CGD machines (tramhill, leehill...)
#setenv DIAG_HOME /project/amp/amwg/amwg_diagnostics 

# CSIL machines (geyser, caldeira, ...)
#setenv DIAG_HOME /glade/p/cesm/amwg/amwg_diagnostics

# NERSC (euclid)
#setenv DIAG_HOME /global/homes/h/hannay/amwg/amwg_diagnostics
#setenv DIAG_HOME /project/projectdirs/m2187/amwg/amwg_diagnostics

# NCSS (lens)
#setenv DIAG_HOME  /ccs/home/hannay/amwg/amwg_diagnostics

#*****************************************************************

# ****************************
# *** Additional settings  ***
# **************************** 

# Send yourself an e-mail message when everything is done. 

set email = 1        # (0=ON,1=OFF) 
set email_address = ${LOGNAME}@ucar.edu

#*****************************************************************
#*****************************************************************

# **************************
# *** Advanced settings  ***
# **************************

#*****************************************************************

#-------------------------------------------------
# For CAM-SE grid, specify a lat/lon to interpolate to
#-------------------------------------------------
# By default, teh CAM-SE output is interpolated CAM_SE on a 1 degree grid
# You can select another grid below.

set test_res_out = 0.9x1.25
set cntl_res_out = 0.9x1.25

# Set the interpolation method for regridding: bilinear, patch, conserver
setenv INTERP_METHOD bilinear

#-------------------------------------------------
# Set to 0 to use swift
#-------------------------------------------------
setenv use_swift  1           # (0=ON,1=OFF)
setenv swift_scratch_dir /glade/scratch/$USER/swift_scratch/
set test_inst =  -1
set cntl_inst =  -1

#------------------------------------------------- 
# For set 12:
#-------------------------------------------------
# Select vertical profiles to be computed. Select from list below,
# or do all stations, or none. You must have computed the monthly
# climatological means for this to work. Preset to the 17 selected
# stations.


# Specify selected stations for computing vertical profiles.
if ($set_12 == 0 || $all_sets == 0) then
# ARCTIC (60N-90N)
  set western_alaska      = 1  # (0=ON,1=OFF) 
  set whitehorse_canada   = 1  # (0=ON,1=OFF)
  set resolute_canada     = 0  # (0=ON,1=OFF)
  set thule_greenland     = 0  # (0=ON,1=OFF)
# NORTHERN MIDLATITUDES (23N-60N)
  set new_dehli_india     = 1  # (0=ON,1=OFF)
  set kagoshima_japan     = 1  # (0=ON,1=OFF)
  set tokyo_japan         = 1  # (0=ON,1=OFF)
  set midway_island       = 0  # (0=ON,1=OFF)
  set shipP_gulf_alaska   = 0  # (0=ON,1=OFF)
  set san_francisco_ca    = 0  # (0=ON,1=OFF)
  set denver_colorado     = 1  # (0=ON,1=OFF)
  set great_plains_usa    = 0  # (0=ON,1=OFF)
  set oklahoma_city_ok    = 1  # (0=ON,1=OFF)
  set miami_florida       = 0  # (0=ON,1=OFF)
  set new_york_usa        = 1  # (0=ON,1=OFF)
  set w_north_atlantic    = 1  # (0=ON,1=OFF)
  set shipC_n_atlantic    = 1  # (0=ON,1=OFF)
  set azores              = 1  # (0=ON,1=OFF)
  set gibraltor           = 1  # (0=ON,1=OFF)
  set london_england      = 1  # (0=ON,1=OFF)
  set western_europe      = 0  # (0=ON,1=OFF)
  set crete               = 1  # (0=ON,1=OFF)
# TROPICS (23N-23S)
  set central_india       = 1  # (0=ON,1=OFF)
  set madras_india        = 1  # (0=ON,1=OFF)
  set diego_garcia        = 0  # (0=ON,1=OFF)
  set cocos_islands       = 1  # (0=ON,1=OFF)
  set christmas_island    = 1  # (0=ON,1=OFF)
  set singapore           = 1  # (0=ON,1=OFF)
  set danang_vietnam      = 1  # (0=ON,1=OFF)
  set manila              = 1  # (0=ON,1=OFF)
  set darwin_australia    = 1  # (0=ON,1=OFF)
  set yap_island          = 0  # (0=ON,1=OFF)
  set port_moresby        = 1  # (0=ON,1=OFF)
  set truk_island         = 0  # (0=ON,1=OFF)
  set raoui_island        = 1  # (0=ON,1=OFF)
  set gilbert_islands     = 1  # (0=ON,1=OFF)
  set marshall_islands    = 0  # (0=ON,1=OFF)
  set samoa               = 1  # (0=ON,1=OFF)
  set hawaii              = 0  # (0=ON,1=OFF)
  set panama              = 0  # (0=ON,1=OFF)
  set mexico_city         = 1  # (0=ON,1=OFF)
  set lima_peru           = 1  # (0=ON,1=OFF)
  set san_juan_pr         = 1  # (0=ON,1=OFF)
  set recife_brazil       = 1  # (0=ON,1=OFF)
  set ascension_island    = 0  # (0=ON,1=OFF)
  set ethiopia            = 1  # (0=ON,1=OFF)
  set nairobi_kenya       = 1  # (0=ON,1=OFF)
# SOUTHERN MIDLATITUDES (23S-60S)
  set heard_island        = 1  # (0=ON,1=OFF)
  set w_desert_australia  = 1  # (0=ON,1=OFF)
  set sydney_australia    = 1  # (0=ON,1=OFF)
  set christchurch_nz     = 1  # (0=ON,1=OFF)
  set easter_island       = 0  # (0=ON,1=OFF)
  set san_paulo_brazil    = 1  # (0=ON,1=OFF)
  set falkland_islands    = 1  # (0=ON,1=OFF)
# ANTARCTIC (60S-90S)
  set mcmurdo_antarctica  = 0  # (0=ON,1=OFF)
endif


#-----------------------------------------------------------------

# PALEOCLIMATE coastlines
# Allows users to plot paleoclimate coastlines for sets 5,6,7,9.
# Two special files are created which contain the needed data 
# from each different model orography. The names for these files
# are derived from the variables $test_casename and $cntl_casename 
# defined above by the user.  
# If the user wants to compare results from two different times
# when the coastlines are different then the difference plots 
# can be turned off. No difference plots are made when the
# paleoclimate model is compared to OBS DATA.
 
set paleo = 1             # (0=use or create coastlines,1=OFF)

# if needed set these
set land_mask1 = 1      # define value for land in test case ORO
set land_mask2 = 1      # define value for land in cntl case ORO
set diff_plots = 1      # make difference plots for different
                        # continental outlines  (0=ON,1=OFF)

#*****************************************************************

# **************************
# *** Obsolete settings  ***
# **************************

# These settings were used in older versions of the diagnostic
# package. It is uncommon to use these settings. 
# These settings are not somewhat obsolete  but left here 
# for the user s convenience.

#-----------------------------------------------------------------
# Morrison-Gettleman Microphysics plots (beginning in CAM3.5, with MG 
# microphysics on)
# NOTE: for model-to-model only
set microph = 0          # (0=ON,1=OFF) 


#******************************************************************
#                 INSTALLATION SPECIFIC THINGS
#      ONLY MAKE CHANGES IF YOU ARE INSTALLING THE DIAGNOSTIC
#      PACKAGE (NCL CODE ETC) ON YOUR LOCAL SYSTEM (NON NCAR SITES)
#******************************************************************

# set global and environment variables
unset noclobber
if (! $?NCARG_ROOT) then
  echo ERROR: environment variable NCARG_ROOT is not set
  echo "Do this in your .cshrc file (or whatever shell you use)"
  echo setenv NCARG_ROOT /contrib      # most NCAR systems 
  exit
else
  set NCL = $NCARG_ROOT/bin/ncl       # works everywhere
endif 


#******************************************************************
#******************************************************************
#                     S T O P   H E R E 
#                  END OF USER MODIFY SECTION
#******************************************************************
#******************************************************************

#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!


#******************************************************************
#******************************************************************
#                 DON T CHANGE ANYTHING BELOW HERE
#                 OR ELSE YOUR LIFE WILL BE SHORT
#******************************************************************
#******************************************************************
# set c-shell limits
limit stacksize unlimited
limit datasize  unlimited

setenv WKDIR      $test_path_diag 
setenv OBS_DATA   $DIAG_HOME/obs_data 
setenv CAM35_DATA $DIAG_HOME/cam35_data 
setenv MAP_DATA   $DIAG_HOME/map_files 
setenv DIAG_CODE  $DIAG_HOME/code
setenv COMPARE    $CNTL
setenv PLOTTYPE   $p_type
setenv COLORTYPE  $c_type
setenv DELETEPS   $delete_ps
setenv MG_MICRO   $microph
setenv HTML_HOME  $DIAG_HOME/html
     
#-----------------------------------------------------------------

# Turn off four_seasons if comparing against OBS b/c
# AMWG does not have SON and MAM for all vars in obs_data. 
# nanr 29apr10

if ($CNTL == OBS) then
   set four_seasons = 1
endif                              

#-----------------------------------------------------------------        
# Select the climatological means to be PLOTTED or in tables.
# You must have the appropriate set(s) turned on to make plots.
   
if ($four_seasons == 1 ) then
    set plot_ANN_climo = 0       # (0=ON,1=OFF) 
    set plot_DJF_climo = 0       # (0=ON,1=OFF) 
    set plot_JJA_climo = 0       # (0=ON,1=OFF) 
    set plot_MAM_climo = 1       # (0=ON,1=OFF) 
    set plot_SON_climo = 1       # (0=ON,1=OFF) 
    set plot_MON_climo = 0       # (0=ON,1=OFF) 
endif

if ($four_seasons == 0) then
    set plot_ANN_climo = 0       # (0=ON,1=OFF) 
    set plot_DJF_climo = 0       # (0=ON,1=OFF) 
    set plot_JJA_climo = 0       # (0=ON,1=OFF) 
    set plot_MAM_climo = 0       # (0=ON,1=OFF) 
    set plot_SON_climo = 0       # (0=ON,1=OFF) 
    set plot_MON_climo = 0       # (0=ON,1=OFF) 
endif

#-----------------------------------------------------------------
# Set the rgb file name
if ($c_type == COLOR) then
  if (! $?color_bar) then
    setenv RGB_FILE $DIAG_HOME/rgb/amwg.rgb  # use default
  else
    if ($color_bar == default) then
      setenv RGB_FILE $DIAG_HOME/rgb/amwg.rgb
    else
      if ($color_bar == blue_red) then
           setenv RGB_FILE $DIAG_HOME/rgb/bluered.rgb
      endif
      if ($color_bar == blue_yellow_red) then
        setenv RGB_FILE $DIAG_HOME/rgb/blueyellowred.rgb
      endif
    endif
  endif
endif

#-----------------------------------------------------------------
# the monthly time weights
if ($weight_months == 0) then
# the ann time weights
  set ann_weights = (   0.08493150770664215 0.07671232521533966 0.08493150770664215 \
    0.08219178020954132 0.08493150770664215 0.08219178020954132 0.08493150770664215 \
    0.08493150770664215 0.08219178020954132 0.08493150770664215 0.08219178020954132 \
    0.08493150770664215)
# the djf time weights
  set djf_weights = (0.3444444537162781 0.3444444537162781 0.3111111223697662)
# the mam time weights
  set mam_weights = (0.3369565308094025 0.3260869681835175 0.3369565308094025)
# the jja time weights
  set jja_weights = (0.3260869681835175 0.3369565308094025 0.3369565308094025)
# the son time weights
  set son_weights = (0.32967033 0.34065934 0.32967033)
endif

#------------------------------------------------------------------------
echo " "
echo "***************************************************"
echo "          CCSM AMWG DIAGNOSTIC PACKAGE"
echo "          Script Version: "$DIAG_VERSION
echo "          NCARG_ROOT = "$NCARG_ROOT
echo "          "`date`
echo "***************************************************"
echo " "
#------------------------------------------------------------
# check for .hluresfile in $HOME
if (! -e $HOME/.hluresfile) then
  echo NO .hluresfile PRESENT IN YOUR $HOME DIRECTORY
  echo COPYING .hluresfile to $HOME
  cp $DIAG_CODE/.hluresfile $HOME
endif

#------------------------------------------------------------
# check if directories exist

if (! -e ${test_path_diag}) then
  echo The directory \$test_path_diag ${test_path_diag} does not exist
  echo Trying to create \$test_path_diag ${test_path_diag} 
  mkdir -p ${test_path_diag} 
  if (! -e ${test_path_diag}) then
    echo ERROR: Unable to create \$test_path_diag : ${test_path_diag}    
    echo ERROR: Please create: ${test_path_diag} 
  exit
  endif
endif

if (! -w ${test_path_diag}) then
  echo ERROR: YOU DO NOT HAVE WRITE ACCESS TO \$test_path_diag ${test_path_diag}
  exit
endif

if (! -e ${test_path_history}) then
  echo The directory \$test_path_history ${test_path_history} does not exist
  echo Trying to create \$test_path_history ${test_path_history} 
  mkdir -p ${test_path_history} 
  if (! -e ${test_path_history}) then
    echo ERROR: Unable to create \$test_path_history: ${test_path_history} 
    echo ERROR: Please create ${test_path_history} 
   exit
  endif
endif

if (! -e ${test_path_climo}) then
  echo The directory \$test_path_climo ${test_path_climo} does not exist
  echo Trying to create \$test_path_climo ${test_path_climo} 
  mkdir -p ${test_path_climo} 
  if (! -e ${test_path_climo}) then
    echo ERROR: Unable to create \$test_path_climo: ${test_path_climo} 
    echo ERROR: Please create ${test_path_climo} 
   exit
  endif
endif

if (! -e ${test_path_diag}) then
  echo The directory \$test_path_diag ${test_path_diag} does not exist
  echo Trying to create \$test_path_diag ${test_path_diag} 
  mkdir -p ${test_path_diag} 
  if (! -e ${test_path_diag}) then
    echo ERROR: Unable to create \$test_path_diag: ${test_path_diag} 
    echo ERROR: Please create ${test_path_diag} 
   exit
  endif
endif

if ($CNTL == USER) then
  if (! -e ${cntl_path_history}) then
    echo The directory \$cntl_path_history ${cntl_path_history} does not exist
    echo Trying to create \$cntl_path_history ${cntl_path_history} 
    mkdir -p ${cntl_path_history}    
    if (! -e ${cntl_path_history}) then
       echo ERROR: Unable to create \$cntl_path_history: ${cntl_path_history} 
       echo ERROR: Please create ${cntl_path_history} 
       exit
    endif
  endif
endif

if ($CNTL == USER) then
  if (! -e ${cntl_path_climo}) then
    echo The directory \$cntl_path_climo ${cntl_path_climo} does not exist
    echo Trying to create \$cntl_path_climo ${cntl_path_climo} 
    mkdir -p ${cntl_path_climo}    
    if (! -e ${cntl_path_climo}) then
       echo ERROR: Unable to create \$cntl_path_climo: ${cntl_path_climo} 
       echo ERROR: Please create  ${cntl_path_climo} 
       exit
    endif
  endif
endif


#-----------------------------------------------------------------
if ($paleo == 0) then
  setenv PALEO True
  if ($diff_plots == 0) then    # only allow when paleoclimate true
    setenv DIFF_PLOTS True      
  else
    setenv DIFF_PLOTS False
  endif
else
  setenv PALEO False
  setenv PALEOCOAST1 null
  setenv PALEOCOAST2 null
  setenv DIFF_PLOTS False
endif

#-----------------------------------------------------------------
if ($time_stamp == 0) then
  setenv TIMESTAMP True
else
  setenv TIMESTAMP False
endif
if ($tick_marks == 0) then
  setenv TICKMARKS True
else
  setenv TICKMARKS False
endif
if ($custom_names == 0) then
  setenv CASENAMES True
  setenv CASE1 $test_name
  setenv CASE2 $cntl_name
else
  setenv CASENAMES False
  setenv CASE1 null 
  setenv CASE2 null
  setenv CNTL_PLOTVARS null  
endif

#--------------------------------------------------------------------
# Variables for significance
if ($significance == 0) then 
  if ($CNTL != USER) then
    echo ERROR: SIGNIFICANCE TEST ONLY AVAILABLE FOR MODEL-TO-MODEL COMPARISONS
    exit
  endif
  if ($test_nyrs < 10) then
    echo ERROR: NUMBER OF TEST CASE YRS $test_nyrs IS TOO SMALL FOR SIGNIFICANCE TEST.
    exit
  endif
  if ($cntl_nyrs < 10) then
    echo ERROR: NUMBER OF CNTL CASE YRS $cntl_nyrs IS TOO SMALL FOR SIGNIFICANCE TEST.
    exit
  endif
  setenv SIG_PLOT True
  setenv SIG_LVL $sig_lvl
else
  setenv SIG_PLOT False
  setenv SIG_LVL "null"
endif 

#-----------------------------------------------------------------
# set test directory names
#-----------------------------------------------------------------
set test_in  = ${test_path_climo}${test_casename}       # input files 
set test_out = ${test_path_climo}${test_casename}       # output files

#--------------------------------------------------------------------
# set control case names
#-----------------------------------------------------------------
echo ' '
if ($CNTL == OBS) then        # observed data
 echo '------------------------------'
 echo  COMPARISONS WITH OBSERVED DATA 
 echo '------------------------------'
 set cntl_in = $OBS_DATA
endif

if ($CNTL == USER) then        # user specified
 echo '------------------------------------'
 echo  COMPARISONS WITH USER SPECIFIED CNTL 
 echo '------------------------------------'
 echo ' '
 set cntl_in  = ${cntl_path_climo}${cntl_casename}
 set cntl_out = ${cntl_path_climo}${cntl_casename}
endif


#----------------------------------------------------------------
# Do some safety checks
#----------------------------------------------------------------

if ($test_in == $cntl_in) then
  echo ERROR: THE CLIMO PATHS ARE IDENTICAL FOR TEST AND CNTL
  echo EROOR: test_path_climo and cntl_path_climo SHOULD BE DIFFERENT
  echo ERROR: test_path_climo   $test_in 
  echo ERROR: cntl_path_climo   $cntl_in 
  exit  ##++ hannay  =>want to change script to allow to compare two 2 time-periods of the same run
endif   
if ($CNTL == USER) then    
  if ($test_casename == $cntl_casename) then
    echo WARNING: THE TEST AND CNTL AND CASENAME NAMES ARE IDENTICAL
    ##exit  ## ++ hannay  =>want to change script to allow to compare two 2 time-periods of the same run
  endif
endif   

if ($test_path_history == $cntl_path_history) then
    echo ERROR: THE TEST PATH AND CNTL PATH ARE IDENTICAL
    echo THEY MUST BE DIFFERENT TO RECEIVE HPSS DOWNLOADS!
    exit  
endif

#*****************************************************************
# Determine attributes of history files
#*****************************************************************

## Hannay: Later on, we want to add: 'physics' attribute 

echo DETERMINE ATTRIBUTES FOR HISTORY FILES 
echo ' '

if ($test_filetype == "monthly_history") then
  set test_keyFile = "null"
else
  set test_keyFile = `ls ${test_path_history}/${test_casename}*.nc | head -n 1`
endif

$DIAG_CODE/determine_output_attributes.csh   test  \
					     $test_casename \
					     $test_path_HPSS \
					     $test_path_history \
					     $test_path_climo \
					     $test_path_diag \
					     $test_first_yr \
					     $test_compute_climo \
                                             $test_filetype \
                                             $test_keyFile  >&! /dev/null 


set test_rootname  = `cat $test_path_diag/attributes/test_rootname`
set test_grid      = `cat $test_path_diag/attributes/test_grid`
set test_res_in    = `cat $test_path_diag/attributes/test_res`
set test_var_list  = `cat $test_path_diag/attributes/test_var_list`
set test_non_time_var_list  = `cat $test_path_diag/attributes/test_non_time_var_list`

echo ' '
echo 'TEST CASE ATTRIBUTES'
echo '  test_rootname' =  $test_rootname
echo '  test_grid' = $test_grid
echo '  test_res_in' = $test_res_in
echo '  test_res_in' = $test_res_in

if ($CNTL == USER) then  

    if ($cntl_filetype == "monthly_history") then
      set cntl_keyFile = "null"
    else
      set cntl_keyFile = `ls ${cntl_path_history}/${cntl_casename}*.nc | head -n 1`
    endif

    $DIAG_CODE/determine_output_attributes.csh   cntl \
					     $cntl_casename \
					     $cntl_path_HPSS  \
					     $cntl_path_history \
					     $cntl_path_climo \
					     $test_path_diag \
					     $cntl_first_yr \
					     $cntl_compute_climo \
                                             $cntl_filetype \
                                             $cntl_keyFile  >&! /dev/null 
    set cntl_rootname  = `cat $test_path_diag/attributes/cntl_rootname`
    set cntl_grid      = `cat $test_path_diag/attributes/cntl_grid`
    set cntl_res_in    = `cat $test_path_diag/attributes/cntl_res`
    set cntl_var_list  = `cat $test_path_diag/attributes/cntl_var_list`
    set cntl_non_time_var_list  = `cat $test_path_diag/attributes/cntl_non_time_var_list`

    echo ' '
    echo 'CNTL CASE ATTRIBUTES'
    echo '  cntl_rootname' =  $cntl_rootname
    echo '  cntl_grid' = $cntl_grid
    echo '  cntl_res_in' = $cntl_res_in
else
    set cntl_rootname  = " " 
    set cntl_grid      = " " 
    set cntl_res_in    = " " 
    set cntl_var_list  = " " 
    set cntl_non_time_var_list  = " " 
endif


#*****************************************************************
# Get monthly files from HPSS if needed
#*****************************************************************
#-----------
# Test case
#-----------

# Removed for Pegasus workflow
#if ($test_compute_climo == 0) then 
#  if ($test_filetype == "monthly_history") then
#    echo ' '
#    echo GETTING TEST CASE MONTHLY FILES FROM THE MSS IF NEEDED
#    echo THIS MIGHT TAKE SOME TIME ... 
#    echo ' '
#
#    $DIAG_CODE/read_fom_hpss.csh   $test_path_HPSS \
#				   $test_path_history \
#				   $test_first_yr \
#				   $test_nyrs \
#				   $test_rootname
#  else
#    $DIAG_CODE/read_fom_hpss_ts.pl $test_path_HPSS \
#                                   $test_path_history \
#                                   $test_first_yr \
#                                   $test_nyrs \
#                                   $test_rootname 
#  endif
#endif

#-----------
# Control
#-----------


# Removed for Pegasus workflow
#if ($CNTL == USER && $cntl_compute_climo == 0) then
# if ($cntl_filetype == "monthly_history") then
#  echo ' ' 
#  echo GETTING CONTROL CASE MONTHLY FILES FROM THE HPSS IF NEEDED
#  echo THIS MIGHT TAKE SOME TIME ... 
#  echo ' '
#  
#  $DIAG_CODE/read_fom_hpss.csh  $cntl_path_HPSS \
#			        $cntl_path_history \
#			        $cntl_first_yr \
#			        $cntl_nyrs \
#			        $cntl_rootname   >&! /dev/null 
# else
#   $DIAG_CODE/read_fom_hpss_ts.pl $cntl_path_HPSS \
#                                  $cntl_path_history \
#                                  $cntl_first_yr \
#                                  $cntl_nyrs \
#                                  $cntl_rootname >&! /dev/null 
# endif
#endif




#********************************************************************
# If computing climatological means, check if all monthly file are present 
#********************************************************************

#-----------
# Test case
#-----------

if ($test_compute_climo == 0) then
  if ($test_filetype == "monthly_history") then
    # We check the monthly files are present
    $DIAG_CODE/check_history_present.csh  MONTHLY \
				          $test_path_history \
				          $test_first_yr \
				          $test_nyrs \
				          $test_rootname \
				          $test_casename  

    # For DJF, we also need to have either December from previous year or Jan/Feb from next year
    $DIAG_CODE/check_history_present.csh  DJF \
				          $test_path_history \
				          $test_first_yr \
				          $test_nyrs \
				          $test_rootname \
				          $test_casename  
    # For DJF determine if we use December from previous year or Jan/Feb from next year
    @ prev_yri = $test_first_yr - 1
    @ next_yri = $test_first_yr + $test_nyrs
    set filename_prev_year = ${test_rootname}`printf "%04d" ${prev_yri}`
    set filename_next_year = ${test_rootname}`printf "%04d" ${next_yri}`
    if (! -e ${test_path_history}${filename_prev_year}-12.nc) then   
	set test_djf = NEXT
    else
	set test_djf = PREV
    endif
  else
    @ test_end = $test_first_yr + $test_nyrs - 1
    $DIAG_CODE/check_timeSeries.pl $test_path_history \
                                   $test_rootname \
                                   $test_first_yr \
                                   $test_end \
                                   $test_path_climo \
                                   $strip_off_vars \
                                   $test_var_list \
                                   test_file_list.txt
    if ($status == 1) then
      echo "*** Test case: not all CAM output files were found."  
      echo "*** Check that the casename and year ranges are correct."
      echo "*** Exiting the script."
      exit
    endif
    if ($strip_off_vars == 0) then
      mv $test_path_climo/diag_var_list.txt $test_path_diag/attributes/test_var_list
      set test_var_list  = `cat $test_path_diag/attributes/test_var_list` 
    endif
    set test_djf = `head -n 1 $test_path_climo/DJF.txt`
  endif
endif

#-----------
# Control
#-----------

if ($CNTL == USER && $cntl_compute_climo == 0) then

  if ($cntl_filetype == "monthly_history") then
    # We check the monthly files are present
    $DIAG_CODE/check_history_present.csh  MONTHLY  \
				         $cntl_path_history  \
				         $cntl_first_yr  \
				         $cntl_nyrs  \
				         $cntl_rootname  \
				         $cntl_casename  

    # For DJF, we also need to have either December from previous year or Jan/Feb from next year
    $DIAG_CODE/check_history_present.csh  DJF  \
				         $cntl_path_history  \
				         $cntl_first_yr  \
				         $cntl_nyrs  \
				         $cntl_rootname  \
				         $cntl_casename  
    # For DJF determine if we use December from previous year or Jan/Feb from next year
    @ prev_yri = $cntl_first_yr - 1
    @ next_yri = $cntl_first_yr + $cntl_nyrs
    set filename_prev_year = ${cntl_rootname}`printf "%04d" ${prev_yri}`
    set filename_next_year = ${cntl_rootname}`printf "%04d" ${next_yri}`
    if (! -e ${cntl_path_history}${filename_prev_year}-12.nc) then   
	set cntl_djf = NEXT
    else
	set cntl_djf = PREV
    endif
  else
    @ cntl_end = $cntl_first_yr + $cntl_nyrs - 1
    $DIAG_CODE/check_timeSeries.pl $cntl_path_history \
                                   $cntl_rootname \
                                   $cntl_first_yr \
                                   $cntl_end \
                                   $cntl_path_climo \
                                   $strip_off_vars \
                                   $cntl_var_list \
                                   cntl_file_list.txt
  if ($status == 1) then
      echo "*** Control case: Not all CAM output files were found."  
      echo "*** Check that the casename and year ranges are correct."
      echo "*** Exiting the script."
      exit
    endif
    if ($strip_off_vars == 0) then
      mv $cntl_path_climo/diag_var_list.txt $cntl_path_diag/attributes/cntl_var_list
      set cntl_var_list  = `cat $cntl_path_diag/attributes/cntl_var_list`
    endif
    set cntl_djf = `head -n 1 $cntl_path_climo/DJF.txt`
  endif
endif


echo "SWIFT:" $use_swift

#**************************************************************
#***************************************************************
# If not using swift => beginning of non swift branch
#***************************************************************
#**************************************************************

if ($use_swift == 1) then  # beginning of use_swift branch


#**********************************************************************
# COMPUTE CLIMATOLOGIES
#**********************************************************************

#---------------------------------------------------------------------
#  COMPUTE CLIMATOLOGIES FOR TEST CASE
#---------------------------------------------------------------------

if ($test_compute_climo == 0) then 

    if ( $significance == 1) then 
	$DIAG_CODE/compute_climo.csh  $test_path_history \
				      $test_path_climo \
				      $test_path_diag \
				      $test_first_yr \
				      $test_nyrs \
				      $test_casename \
				      $test_rootname \
				      $weight_months \
				      $strip_off_vars \
				      test \
				      $test_djf \
                                      $test_filetype \
                                      $DIAG_CODE
	\rm -f $test_path_climo/*prev.nc $test_path_climo/*next.nc 
   else 
	#echo ERROR: The option "significance is currently broken"
        #exit
	$DIAG_CODE/compute_climo_significance.csh  $test_path_history \
				                   $test_path_climo \
				                   $test_path_diag \
				                   $test_first_yr \
				                   $test_nyrs \
				                   $test_casename \
				                   $test_rootname \
				                   $weight_months \
				                   $strip_off_vars \
				                   test \
				                   $test_djf \
				                   $significance \
						   $test_filetype \
					           $DIAG_CODE
    endif   
   
endif 

#---------------------------------------------------------------------
#  COMPUTE CLIMATOLOGIES FOR CTNL CASE
#---------------------------------------------------------------------

if ( ($CNTL == USER) && ($cntl_compute_climo == 0)  ) then 
   
    if ( $significance == 1) then 
	$DIAG_CODE/compute_climo.csh  $cntl_path_history \
				      $cntl_path_climo \
				      $test_path_diag \
				      $cntl_first_yr \
				      $cntl_nyrs \
				      $cntl_casename \
				      $cntl_rootname \
				      $weight_months \
				      $strip_off_vars \
				      cntl \
				      $cntl_djf \
                                      $cntl_filetype \
                                      $DIAG_CODE
	\rm -f $cntl_path_climo/*prev.nc $cntl_path_climo/*next.nc 
    else 
	#echo ERROR: The option "significance is currently broken"
	#exit
	$DIAG_CODE/compute_climo_significance.csh  $cntl_path_history  \
				                   $cntl_path_climo \
				                   $test_path_diag \
				                   $cntl_first_yr  \
				                   $cntl_nyrs \
				                   $cntl_casename  \
				                   $cntl_rootname  \
				                   $weight_months  \
				                   $strip_off_vars  \
				                   cntl  \
				                   $cntl_djf  \
				                   $significance \
					   	   $cntl_filetype \
						   $DIAG_CODE
    endif   
  

endif  ## end of if ( ($CNTL == USER) && ($cntl_compute_climo == 0) )



#---------------------------------------------------------------------
#  If SE grid, convert to lat/lon grid
#---------------------------------------------------------------------


if ($test_grid == SE && $test_compute_climo == 0) then

  echo Regridding Test case

  setenv INGRID $test_res_in
  setenv OUTGRID $test_res_out
  mkdir ${test_path_climo}/sav_se
  ls ${test_out}*.nc > ${test_path_climo}climo_files
  set files = `cat ${test_path_climo}climo_files`
  foreach file ($files)
     set se_file=$file:r_$test_grid.nc
     echo " "
     echo REMAP $file from CAM-SE grid to RECTILINEAR $OUTGRID
     mv $file $se_file
     setenv TEST_INPUT ${se_file}
     setenv TEST_PLOTVARS ${file}
     $NCL <  $DIAG_CODE/regridclimo.ncl
     mv $se_file ${test_path_climo}/sav_se
  end
endif   

if ($CNTL == USER) then
if ($cntl_grid == SE && $cntl_compute_climo == 0) then

  echo Regridding CNTL case

  setenv INGRID $cntl_res_in
  setenv OUTGRID $cntl_res_out 
  mkdir ${cntl_path_climo}/sav_se
  ls ${cntl_out}*.nc > ${cntl_path_climo}climo_files
  cat ${cntl_path_climo}climo_files
  set files = `cat ${cntl_path_climo}climo_files`
   
  foreach file ($files)
     set se_file=$file:r_$cntl_grid.nc
     echo " "
     echo REMAP $file from CAM-SE grid to RECTILINEAR $OUTGRID
     mv $file $se_file
     setenv TEST_INPUT ${se_file}
     setenv TEST_PLOTVARS ${file}
     $NCL <  $DIAG_CODE/regridclimo.ncl
     mv $se_file ${cntl_path_climo}/sav_se
  end
endif
   
endif

#**************************************************************
# Check if climos are present
#**************************************************************

if ($four_seasons == 0) then
    set climo_months = (01 02 03 04 05 06 07 08 09 10 11 12 ANN DJF MAM JJA SON)
else
    set climo_months = (01 02 03 04 05 06 07 08 09 10 11 12 ANN DJF JJA)   
endif

#--------------------------------------------------------------------
# check for test case climo files always needed
#--------------------------------------------------------------------

echo 'CHECKING FOR TEST CLIMO FILES'
echo ' '

foreach mth ($climo_months)
    
   set climo_file=${test_path_climo}/${test_casename}_${mth}_climo.nc
   if (! -e $climo_file) then    
        echo ' '
        echo ERROR: $climo_file  NOT FOUND
        exit
   else
        echo FOUND : $climo_file
   endif
end

# climatological files are present
echo '-->ALL NEEDED '${test_casename}' CLIMO AND/OR MEANS FILES FOUND'
echo ' '

#--------------------------------------------------------------------
# check for cntl case climo files if needed
#--------------------------------------------------------------------
if ($CNTL == USER) then

echo 'CHECKING FOR CTNL CLIMO FILES'
echo ' '

foreach mth ($climo_months)
    
   set climo_file=${cntl_path_climo}/${cntl_casename}_${mth}_climo.nc
   if (! -e $climo_file) then    
        echo ' '
        echo ERROR: $climo_file  NOT FOUND
        exit
   else
        echo FOUND : $climo_file
   endif
end

# climatological files are present
echo '-->ALL NEEDED '${cntl_casename}' CLIMO AND/OR MEANS FILES FOUND'


endif


#**************************************************************************

if ($set_1 == 1 && $set_2 == 1 && $set_3 == 1 && $set_4 == 1 && $set_4a == 1 && \
    $set_5 == 1 && $set_6 == 1 && $set_7 == 1 && $set_8 == 1 && \
    $set_9 == 1 && $set_10 == 1 && $set_11 == 1 && $set_12 &&  \
    $set_13 == 1 && $set_14 == 1 && $set_15 == 1 && $set_16 == 1 &&\
    $wset_1 == 1 && \
    $cset_1 == 1 && $cset_2 == 1 && $cset_3 == 1 && $cset_4 == 1 && $cset_5 == 1 && $cset_6 == 1 &&  $cset_7 == 1 &&\
    $all_sets == 1 && $all_waccm_sets == 1 && $all_chem_sets == 1) then
  echo ' '
  echo "NO DIAGNOSTIC SETS SELECTED (1-13)" 
  exit
endif

# Set this to 0; WACCM sets can turn it on.
setenv USE_WACCM_LEVS 0

#**************************************************************************
if ($plot_ANN_climo == 1 && $plot_DJF_climo == 1 && \
    $plot_SON_climo == 1 && $plot_MAM_climo == 1 && \
    $plot_JJA_climo == 1 && $plot_MON_climo == 1) then
  echo ' '
  echo "NO SELECTION MADE (ANN, MAM, JJA, SON, DJF, MON) FOR TABLES AND/OR PLOTS"
  exit
endif


if ($four_seasons == 0) then
    set plots = (ANN DJF MAM JJA SON)
else
    set plots = (ANN DJF JJA)
endif


#**********************************************************************
# set NCDF_MODE and clean up plotvars files if needed

setenv NCDF_MODE write

## If we are computing new climos, we clean up the files
if ($test_compute_climo == 0) then
  setenv NCDF_MODE create
endif
if ($CNTL != OBS && $cntl_compute_climo == 0) then
  setenv NCDF_MODE create
endif

# delete plotvars files if  NCDF_MODE = create

if ($NCDF_MODE == create) then 

    set file=${test_path_diag}/${test_casename}_plotvars.nc
    if (-e ${file}) then
	\rm -f ${file}
    endif
 
    set file=${test_path_diag}/${cntl_casename}_plotvars.nc
    if (-e ${file} ) then
      \rm -f ${file}  
    endif

    foreach mth  (ANN DJF MAM JJA SON 01 02 03 04 05 06 07 08 09 10 11 12 MONTHS)
     
      set file=${test_path_diag}/${test_casename}_${mth}_plotvars.nc
      if (-e ${file}) then
	\rm -f ${file}
      endif
 
      set file=${test_path_diag}/${cntl_casename}_${mth}_plotvars.nc
      if (-e ${file} ) then
	\rm -f ${file}  
      endif

    # If significance is set to true
    if ($significance == 0) then 
       set file=${test_path_diag}/${test_casename}_${mth}_variance.nc
       if (-e ${file}) then
	    \rm -f ${file}
       endif
    
       set file=${test_path_diag}/${cntl_casename}_${mth}_variance.nc
       if (-e ${file} ) then
	    \rm -f ${file}  
       endif
     endif

    end

endif


#***************************************************************
# Setup webpages and make tar file
if ($web_pages == 0) then
  setenv DENSITY $density
  if ($img_type == 0) then
    set image = png
  else
    if ($img_type == 1) then
      set image = gif
    else
      set image = jpg
    endif
  endif
  if ($p_type != ps) then
    echo ERROR: WEBPAGES ARE ONLY MADE FOR POSTSCRIPT PLOT TYPE
    exit
  endif
  if ($CNTL == OBS) then
    setenv WEBDIR ${test_path_diag}$test_casename-obs
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_obs $test_casename $image
    cd $test_path_diag
    set tarfile = ${test_casename}-obs.tar
  else          # model-to-model 
    setenv WEBDIR ${test_path_diag}$test_casename-$cntl_casename
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_2models $test_casename $cntl_casename $image
    cd $test_path_diag
    set tarfile = $test_casename-${cntl_casename}.tar
  endif
endif

#****************************************************************
#   SET 1 - TABLES OF MEANS, DIFFS, RMSE
#****************************************************************
if ($all_sets == 0 || $set_1 == 0) then

    echo " "
    echo SET 1 TABLES OF MEANS, DIFFS, RMSES

    foreach name ($plots)
	setenv SEASON $name 
	setenv TEST_INPUT    ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then 
	    setenv CNTL_INPUT $OBS_DATA
	else
	    setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif
	echo MAKING $SEASON TABLES 
	$NCL <  $DIAG_CODE/tables.ncl
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
    end
    if ($web_pages == 0) then
	mv *.asc $WEBDIR/set1
    endif

endif

#*****************************************************************
#   SET 2 - ANNUAL LINE PLOTS OF IMPLIED FLUXES
#*****************************************************************

if ($all_sets == 0 || $set_2 == 0) then
    echo " "
    echo SET 2 ANNUAL IMPLIED TRANSPORTS
    setenv TEST_INPUT ${test_path_climo}/${test_casename}_ANN_climo.nc
    setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_ANN_plotvars.nc
    if ($CNTL == OBS) then
	setenv CNTL_INPUT $OBS_DATA
    else
	setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_ANN_climo.nc
	setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_ANN_plotvars.nc
    endif
    if (-e $TEST_PLOTVARS) then
	setenv NCDF_MODE write
    else
	setenv NCDF_MODE create
    endif
    echo OCEAN FRESHWATER TRANSPORT 
    $NCL < $DIAG_CODE/plot_oft.ncl
    if ($NCDF_MODE == create) then
	setenv NCDF_MODE write
    endif
    echo OCEAN AND ATMOSPHERIC TRANSPORT
    $NCL < $DIAG_CODE/plot_oaht.ncl
    if ($NCDF_MODE == create) then
	setenv NCDF_MODE write
    endif

    if ($web_pages == 0) then
	$DIAG_CODE/ps2imgwww.csh set2 $image &
    endif

endif

#*****************************************************************
#   SET 3 - ZONAL LINE PLOTS
#*****************************************************************

if ($all_sets == 0 || $set_3 == 0) then
    echo " "
    echo SET 3 ZONAL LINE PLOTS

    foreach name ($plots)
	setenv SEASON $name
	setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc  
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then
	    setenv CNTL_INPUT $OBS_DATA 
	else
	    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc    
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif 
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif
	echo MAKING $SEASON PLOTS 
	$NCL < $DIAG_CODE/plot_zonal_lines.ncl
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
    end

    if ($web_pages == 0) then
	$DIAG_CODE/ps2imgwww.csh set3 $image &
    endif

endif

#*****************************************************************
#   SET 4 - LAT/PRESS CONTOUR PLOTS
#*****************************************************************

if ($all_sets == 0 || $set_4 == 0) then
echo " "
echo SET 4 VERTICAL CONTOUR PLOTS

foreach name ($plots)
  setenv SEASON $name 
  setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
  else
    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
  endif
  if (-e $TEST_PLOTVARS) then
    setenv NCDF_MODE write
  else
    setenv NCDF_MODE create
  endif
  echo MAKING $SEASON PLOTS 
  $NCL < $DIAG_CODE/plot_vertical_cons.ncl
  if ($NCDF_MODE == create) then
    setenv NCDF_MODE write
  endif
end

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set4 $image &
endif

endif

#*****************************************************************
#   SET 4a - LON/PRESS CONTOUR PLOTS (10N-10S)
#*****************************************************************

if ($all_sets == 0 || $set_4a == 0) then
    echo " "
    echo SET 4a VERTICAL LON-PRESS CONTOUR PLOTS
    
    foreach name ($plots)
	setenv SEASON $name 
	setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then
	    setenv CNTL_INPUT $OBS_DATA
	else
	    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif
	echo MAKING $SEASON PLOTS 
	$NCL < $DIAG_CODE/plot_vertical_xz_cons.ncl
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
     end

    if ($web_pages == 0) then
	$DIAG_CODE/ps2imgwww.csh set4a $image &
    endif

endif

#****************************************************************
#   SET 5 - LAT/LONG CONTOUR PLOTS
#****************************************************************
if ($all_sets == 0 || $set_5 == 0) then
    echo " "
    echo SET 5 LAT/LONG CONTOUR PLOTS 

    if ($paleo == 0) then
	echo ' '
	setenv MODELFILE ${test_path_climo}/${test_casename}_ANN_climo.nc
	setenv LANDMASK $land_mask1
	if (-e ${test_path_climo}/${test_casename}.lines && -e ${test_path_climo}/${test_casename}.names) then
	    echo TEST CASE COASTLINE DATA FOUND
	    setenv PALEODATA ${test_path_climo}/${test_casename}
	else
	    echo CREATING TEST CASE PALEOCLIMATE COASTLINE FILES 
	    setenv PALEODATA ${test_path_climo}/${test_casename}
	endif
	$NCL < $DIAG_CODE/plot_paleo.ncl
	setenv PALEOCOAST1 $PALEODATA
	if ($CNTL == OBS) then
	    setenv PALEOCOAST2 "null"
	endif
	if ($CNTL == USER) then
	    echo ' '
	    setenv MODELFILE ${cntl_path_climo}/${cntl_casename}_ANN_climo.nc
	    setenv LANDMASK $land_mask2
	    if (-e ${cntl_path_climo}/${cntl_casename}.lines && -e ${cntl_path_climo}/${cntl_casename}.names) then
		echo CNTL CASE COASTLINE DATA FOUND
		setenv PALEODATA $cntl_in
	    else
		echo CREATING CNTL CASE PALEOCLIMATE COASTLINE FILES 
		setenv PALEODATA $cntl_out
	    endif
	    $NCL < $DIAG_CODE/plot_paleo.ncl
	    setenv PALEOCOAST2 $PALEODATA 
	endif
    endif

    foreach name ($plots)
	setenv SEASON $name 
	setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then
	    setenv CNTL_INPUT $OBS_DATA
	else
	    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif   
	if ($significance == 0) then
	    setenv TEST_MEANS    ${test_path_climo}/${test_casename}_${SEASON}_means.nc
	    setenv TEST_VARIANCE ${test_path_diag}/${test_casename}_${SEASON}_variance.nc
	    setenv CNTL_MEANS    ${cntl_path_climo}/${cntl_casename}_${SEASON}_means.nc
	    setenv CNTL_VARIANCE ${test_path_diag}/${cntl_casename}_${SEASON}_variance.nc
	    if (-e $TEST_VARIANCE) then
		setenv VAR_MODE write
	    else
		setenv VAR_MODE create
	    endif  
	else
	    setenv SIG_LVL null
	    setenv TEST_MEANS null
	    setenv TEST_VARIANCE null
	    setenv CNTL_MEANS null
	    setenv CNTL_VARIANCE null
	    setenv VAR_MODE null
	endif
	echo MAKING $SEASON PLOTS
	$NCL < $DIAG_CODE/plot_surfaces_cons.ncl 
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
	if ($significance == 0) then 
	    if($VAR_MODE == create) then
		setenv VAR_MODE write
	    endif
	endif
    end

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set5 $image &
endif

endif

#****************************************************************
#   SET 6 - LAT/LONG VECTOR PLOTS
#****************************************************************
if ($all_sets == 0 || $set_6 == 0) then

echo " "
echo SET 6 LAT/LONG VECTOR PLOTS 

if ($paleo == 0) then
  echo ' '
  setenv MODELFILE ${test_path_climo}/${test_casename}_ANN_climo.nc
  setenv LANDMASK $land_mask1
  if (-e ${test_path_climo}/${test_casename}.lines && -e ${test_path_climo}/${test_casename}.names) then
    echo TEST CASE COASTLINE DATA FOUND
    setenv PALEODATA ${test_path_climo}/${test_casename}
  else
    echo CREATING TEST CASE PALEOCLIMATE COASTLINE FILES 
    setenv PALEODATA ${test_path_climo}/${test_casename}
  endif
  $NCL < $DIAG_CODE/plot_paleo.ncl
  setenv PALEOCOAST1 $PALEODATA
  if ($CNTL == USER) then
    echo ' '
    setenv MODELFILE ${cntl_path_climo}/${cntl_casename}_ANN_climo.nc
    setenv LANDMASK $land_mask2
    if (-e ${cntl_path_climo}/${cntl_casename}.lines && -e ${cntl_path_climo}/${cntl_casename}.names) then
      echo CNTL CASE COASTLINE DATA FOUND
      setenv PALEODATA $cntl_in
    else
      echo CREATING CNTL CASE PALEOCLIMATE COASTLINE FILES 
      setenv PALEODATA $cntl_out
    endif
    $NCL < $DIAG_CODE/plot_paleo.ncl
    setenv PALEOCOAST2 $PALEODATA 
  endif
endif

foreach name ($plots)
  setenv SEASON $name 
  setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
  else
    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
  endif
  if (-e $TEST_PLOTVARS) then
    setenv NCDF_MODE write
  else
    setenv NCDF_MODE create
  endif   
  echo MAKING $SEASON PLOTS 
  $NCL < $DIAG_CODE/plot_surfaces_vecs.ncl
  if ($NCDF_MODE == create) then
    setenv NCDF_MODE write
  endif
end

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set6 $image &
endif

endif

#****************************************************************
#   SET 7 - POLAR CONTOUR AND VECTOR PLOTS
#****************************************************************

if ($all_sets == 0 || $set_7 == 0) then
echo " "
echo SET 7 POLAR CONTOUR AND VECTOR PLOTS 

if ($paleo == 0) then
  echo ' '
  setenv MODELFILE ${test_path_climo}/${test_casename}_ANN_climo.nc
  setenv LANDMASK $land_mask1
  if (-e ${test_path_climo}/${test_casename}.lines && -e ${test_path_climo}/${test_casename}.names) then
    echo TEST CASE COASTLINE DATA FOUND
    setenv PALEODATA ${test_path_climo}/${test_casename}
  else
    echo CREATING TEST CASE PALEOCLIMATE COASTLINE FILES 
    setenv PALEODATA ${test_path_climo}/${test_casename}
  endif
  $NCL < $DIAG_CODE/plot_paleo.ncl
  setenv PALEOCOAST1 $PALEODATA
  if ($CNTL == USER) then
    echo ' '
    setenv MODELFILE ${cntl_path_climo}/${cntl_casename}_ANN_climo.nc
    setenv LANDMASK $land_mask2
    if (-e ${cntl_path_climo}/${cntl_casename}.lines && -e ${cntl_path_climo}/${cntl_casename}.names) then
      echo CNTL CASE COASTLINE DATA FOUND
      setenv PALEODATA $cntl_in
    else
      echo CREATING CNTL CASE PALEOCLIMATE COASTLINE FILES 
      setenv PALEODATA $cntl_out
    endif
    $NCL < $DIAG_CODE/plot_paleo.ncl
    setenv PALEOCOAST2 $PALEODATA 
  endif
endif

foreach name ($plots)
  setenv SEASON $name 
  setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
  else
    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
  endif
  if (-e $TEST_PLOTVARS) then
    setenv NCDF_MODE write
  else
    setenv NCDF_MODE create
  endif   
  if ($significance == 0) then
    setenv TEST_MEANS    ${test_path_climo}/${test_casename}_${SEASON}_means.nc
    setenv TEST_VARIANCE ${test_path_diag}/${test_casename}_${SEASON}_variance.nc
    setenv CNTL_MEANS    ${cntl_path_climo}/${cntl_casename}_${SEASON}_means.nc
    setenv CNTL_VARIANCE ${test_path_diag}/${cntl_casename}_${SEASON}_variance.nc
    if (-e $TEST_VARIANCE) then
      setenv VAR_MODE write
    else
      setenv VAR_MODE create
    endif   
  endif
  echo MAKING $SEASON PLOTS 
  $NCL < $DIAG_CODE/plot_polar_cons.ncl
  if ($NCDF_MODE == create) then
    setenv NCDF_MODE write
  endif
  if ($significance == 0) then 
    if($VAR_MODE == create) then
      setenv VAR_MODE write
    endif
  endif
  $NCL < $DIAG_CODE/plot_polar_vecs.ncl
  if ($NCDF_MODE == create) then
    setenv NCDF_MODE write
  endif
end

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set7 $image &
endif

endif

#****************************************************************
#   SET 8 - ZONAL ANNUAL CYCLE PLOTS
#****************************************************************

if ($all_sets == 0 || $set_8 == 0) then
echo " "
echo SET 8 ANNUAL CYCLE PLOTS 
setenv TEST_INPUT ${test_path_climo}/${test_casename}    # path/casename
setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_MONTHS_plotvars.nc
if ($CNTL == OBS) then
  setenv CNTL_INPUT $OBS_DATA
else
  setenv CNTL_INPUT $cntl_in       # path/casename
  setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_MONTHS_plotvars.nc
endif
if (-e $TEST_PLOTVARS) then
  setenv NCDF_MODE write
else
  setenv NCDF_MODE create
endif
$NCL < $DIAG_CODE/plot_ann_cycle.ncl
if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set8 $image &
endif
endif
#****************************************************************
#  SET 9 - DJF-JJA LAT/LONG PLOTS
#****************************************************************
if ($all_sets == 0 || $set_9 == 0) then
echo ' '
echo SET 9 DJF-JJA CONTOUR PLOTS
if ($paleo == 0) then
  setenv MODELFILE ${test_path_climo}/${test_casename}_ANN_climo.nc
  setenv LANDMASK $land_mask1
  if (-e ${test_path_climo}/${test_casename}.lines && -e ${test_path_climo}/${test_casename}.names) then
    echo TEST CASE COASTLINE DATA FOUND
    setenv PALEODATA ${test_path_climo}/${test_casename}
  if ($CNTL == OBS) then
    setenv PALEOCOAST2 "null"
  endif
  else
    echo CREATING TEST CASE PALEOCLIMATE COASTLINE FILES 
    setenv PALEODATA ${test_path_climo}/${test_casename}
  endif
  $NCL < $DIAG_CODE/plot_paleo.ncl
  setenv PALEOCOAST1 $PALEODATA
  if ($CNTL == USER) then
    echo ' '
    setenv MODELFILE ${cntl_path_climo}/${cntl_casename}_ANN_climo.nc
    setenv LANDMASK $land_mask2
    if (-e ${cntl_path_climo}/${cntl_casename}.lines && -e ${cntl_path_climo}/${cntl_casename}.names) then
      echo CNTL CASE COASTLINE DATA FOUND
      setenv PALEODATA $cntl_in
    else
      echo CREATING CNTL CASE PALEOCLIMATE COASTLINE FILES 
      setenv PALEODATA $cntl_out 
    endif
    $NCL < $DIAG_CODE/plot_paleo.ncl
    setenv PALEOCOAST2 $PALEODATA 
  endif
endif

echo MAKING PLOTS
setenv TEST_INPUT    ${test_path_climo}/${test_casename}
setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}
if ($CNTL == OBS) then
  setenv CNTL_INPUT $OBS_DATA
else
  setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}
  setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}
endif
if (-e ${test_path_diag}/${test_casename}_DJF_plotvars.nc) then
  setenv NCDF_DJF_MODE write
else
  setenv NCDF_DJF_MODE create
endif   
if (-e ${test_path_diag}/${test_casename}_JJA_plotvars.nc) then
  setenv NCDF_JJA_MODE write
else
  setenv NCDF_JJA_MODE create
endif   
$NCL < $DIAG_CODE/plot_seasonal_diff.ncl
if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set9 $image &
endif
endif
#***************************************************************
# SET 10 - Annual cycle line plots 
#***************************************************************
if ($all_sets == 0 || $set_10 == 0) then
echo " "
echo SET 10 ANNUAL CYCLE LINE PLOTS 
setenv TEST_INPUT    ${test_path_climo}/${test_casename}        # path/casename
setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}
if ($CNTL == OBS) then
  setenv CNTL_INPUT $OBS_DATA        # path
else
  setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}
  setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}
endif
if (-e ${test_path_diag}/${test_casename}_01_plotvars.nc && -e ${test_path_diag}/${cntl_casename}_01_plotvars.nc) then
  setenv NCDF_MODE write
else
  setenv NCDF_MODE create
endif
$NCL < $DIAG_CODE/plot_seas_cycle.ncl
if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set10 $image &
endif
endif
#***************************************************************
# SET 11 - Miscellaneous plot types
#***************************************************************
if ($all_sets == 0 || $set_11 == 0) then
echo " "
if ($plot_ANN_climo == 0 && $plot_DJF_climo == 0 && $plot_JJA_climo == 0) then 
  echo SET 11 SWCF/LWCF SCATTER PLOTS 
  setenv TEST_INPUT    ${test_path_climo}/${test_casename}
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
  else
    setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}
  endif
  if (-e ${test_path_diag}/${test_casename}_ANN_plotvars.nc) then
    setenv NCDF_ANN_MODE write
  else
    setenv NCDF_ANN_MODE create
  endif
  if (-e ${test_path_diag}/${test_casename}_DJF_plotvars.nc) then
    setenv NCDF_DJF_MODE write
  else
    setenv NCDF_DJF_MODE create
  endif
  if (-e ${test_path_diag}/${test_casename}_JJA_plotvars.nc) then
    setenv NCDF_JJA_MODE write
  else
    setenv NCDF_JJA_MODE create
  endif
  $NCL < $DIAG_CODE/plot_swcflwcf.ncl
else
  echo "WARNING: plot_ANN_climo, plot_DJF_climo, and plot_JJA_climo"
  echo "must be turned on (=0) for SET 11 LWCF/SWCF scatter plots"
endif

echo " "
if ($plot_MON_climo == 0) then
  echo SET 11 EQUATORIAL ANNUAL CYCLE
  $NCL < $DIAG_CODE/plot_cycle_eq.ncl
else
  echo "WARNING: plot_MON_climo must be turned on (=0)"
  echo "for set 11 ANNUAL CYCLE plots"
endif

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set11 $image &
endif
endif

#****************************************************************
# SET 12 - Vertical profiles
#***************************************************************
if ($all_sets == 0 || $set_12 == 0) then
echo ' '
echo SET 12 VERTICAL PROFILES
setenv TEST_CASE ${test_path_climo}/${test_casename}
if ($CNTL == OBS) then     
  setenv STD_CASE NONE 
else
  setenv STD_CASE $cntl_in
endif

if (-e ${test_path_diag}station_ids) then
 \rm ${test_path_diag}station_ids
endif
if ($set_12 == 2) then    # all stations
  echo 56 >> ${test_path_diag}station_ids
else
  if ($ascension_island == 0) then
    echo 0 >> ${test_path_diag}station_ids
  endif
  if ($diego_garcia == 0) then
    echo 1 >> ${test_path_diag}station_ids
  endif
  if ($truk_island == 0) then
    echo 2 >> ${test_path_diag}station_ids
  endif
  if ($western_europe == 0) then
    echo 3 >> ${test_path_diag}station_ids
  endif
  if ($ethiopia == 0) then
    echo 4 >> ${test_path_diag}station_ids
  endif
  if ($resolute_canada == 0) then
    echo 5 >> ${test_path_diag}station_ids
  endif
  if ($w_desert_australia == 0) then
    echo 6 >> ${test_path_diag}station_ids
  endif
  if ($great_plains_usa == 0) then
    echo 7 >> ${test_path_diag}station_ids
  endif
  if ($central_india == 0) then
    echo 8 >> ${test_path_diag}station_ids
  endif
  if ($marshall_islands == 0) then
    echo 9 >> ${test_path_diag}station_ids
  endif
  if ($easter_island == 0) then
    echo 10 >> ${test_path_diag}station_ids
  endif
  if ($mcmurdo_antarctica == 0) then
    echo 11 >> ${test_path_diag}station_ids
  endif
# skipped south pole antarctica - 12
  if ($panama == 0) then
    echo 13 >> ${test_path_diag}station_ids
  endif
  if ($w_north_atlantic == 0) then
    echo 14 >> ${test_path_diag}station_ids
  endif
  if ($singapore == 0) then
    echo 15 >> ${test_path_diag}station_ids
  endif
  if ($manila == 0) then
    echo 16 >> ${test_path_diag}station_ids
  endif
  if ($gilbert_islands == 0) then
    echo 17 >> ${test_path_diag}station_ids
  endif
  if ($hawaii == 0) then
    echo 18 >> ${test_path_diag}station_ids
  endif
  if ($san_paulo_brazil == 0) then
    echo 19 >> ${test_path_diag}station_ids
  endif
  if ($heard_island == 0) then
    echo 20 >> ${test_path_diag}station_ids
  endif
  if ($kagoshima_japan == 0) then
    echo 21 >> ${test_path_diag}station_ids
  endif
  if ($port_moresby == 0) then
    echo 22 >> ${test_path_diag}station_ids
  endif
  if ($san_juan_pr == 0) then
    echo 23 >> ${test_path_diag}station_ids
  endif
  if ($western_alaska == 0) then
    echo 24 >> ${test_path_diag}station_ids
  endif
  if ($thule_greenland == 0) then
    echo 25 >> ${test_path_diag}station_ids
  endif
  if ($san_francisco_ca == 0) then
    echo 26 >> ${test_path_diag}station_ids
  endif
  if ($denver_colorado == 0) then
    echo 27 >> ${test_path_diag}station_ids
  endif
  if ($london_england == 0) then
    echo 28 >> ${test_path_diag}station_ids
  endif
  if ($crete == 0) then
    echo 29 >> ${test_path_diag}station_ids
  endif
  if ($tokyo_japan == 0) then
    echo 30 >> ${test_path_diag}station_ids
  endif
  if ($sydney_australia == 0) then
    echo 31 >> ${test_path_diag}station_ids
  endif
  if ($christchurch_nz == 0) then
    echo 32 >> ${test_path_diag}station_ids
  endif
  if ($lima_peru == 0) then
    echo 33 >> ${test_path_diag}station_ids
  endif
  if ($miami_florida == 0) then
    echo 34 >> ${test_path_diag}station_ids
  endif
  if ($samoa == 0) then
    echo 35 >> ${test_path_diag}station_ids
  endif
  if ($shipP_gulf_alaska == 0) then
    echo 36 >> ${test_path_diag}station_ids
  endif
  if ($shipC_n_atlantic == 0) then
    echo 37 >> ${test_path_diag}station_ids
  endif
  if ($azores == 0) then
    echo 38 >> ${test_path_diag}station_ids
  endif
  if ($new_york_usa == 0) then
    echo 39 >> ${test_path_diag}station_ids
  endif
  if ($darwin_australia == 0) then
    echo 40 >> ${test_path_diag}station_ids
  endif
  if ($christmas_island == 0) then
    echo 41 >> ${test_path_diag}station_ids
  endif
  if ($cocos_islands == 0) then
    echo 42 >> ${test_path_diag}station_ids
  endif
  if ($midway_island == 0) then
    echo 43 >> ${test_path_diag}station_ids
  endif
  if ($raoui_island == 0) then
    echo 44 >> ${test_path_diag}station_ids
  endif
  if ($whitehorse_canada == 0) then
    echo 45 >> ${test_path_diag}station_ids
  endif
  if ($oklahoma_city_ok == 0) then
    echo 46 >> ${test_path_diag}station_ids
  endif
  if ($gibraltor == 0) then
    echo 47 >> ${test_path_diag}station_ids
  endif
  if ($mexico_city == 0) then
    echo 48 >> ${test_path_diag}station_ids
  endif
  if ($recife_brazil == 0) then
    echo 49 >> ${test_path_diag}station_ids
  endif
  if ($nairobi_kenya == 0) then
    echo 50 >> ${test_path_diag}station_ids
  endif
  if ($new_dehli_india == 0) then
    echo 51 >> ${test_path_diag}station_ids
  endif
  if ($madras_india == 0) then
    echo 52 >> ${test_path_diag}station_ids
  endif
  if ($danang_vietnam == 0) then
    echo 53 >> ${test_path_diag}station_ids
  endif
  if ($yap_island == 0) then
    echo 54 >> ${test_path_diag}station_ids
  endif
  if ($falkland_islands == 0) then
    echo 55 >> ${test_path_diag}station_ids
  endif
endif
$NCL < $DIAG_CODE/profiles.ncl
\rm ${test_path_diag}station_ids

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set12 $image &
endif

endif

#*****************************************************************
# SET 13 - COSP Cloud Simulator Plots
#*****************************************************************
if ($all_sets == 0 || $set_13 == 0) then
echo " "
echo SET 13 COSP CLOUD SIMULATOR PLOTS 
foreach name ($plots)   # do any or all of ANN,DJF,JJA
  setenv SEASON $name 
  setenv TEST_INPUT    ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
    setenv CNTL_PLOTVARS $OBS_DATA
  else
    setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
  endif
  if (-e $TEST_PLOTVARS) then
    setenv NCDF_MODE write
  else
    setenv NCDF_MODE create
  endif   
  $NCL < $DIAG_CODE/plot_matrix.ncl
  if ($NCDF_MODE == create) then
    setenv NCDF_MODE write
  endif
end

if ($web_pages == 0) then
  $DIAG_CODE/ps2imgwww.csh set13 $image &
endif
endif

#*****************************************************************
# SET 14 - Taylor Diagram Plots
#*****************************************************************

if ($all_sets == 0 || $set_14 == 0) then
setenv TEST_INPUT ${test_path_climo}/${test_casename}
if ($CNTL != OBS) then 
    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}
else
    setenv CNTL_INPUT $OBS_DATA
endif

if ($plot_MON_climo == 0) then
  echo ' '
  echo SET 14 TAYLOR DIAGRAM PLOTS
  echo ' '
  $NCL < $DIAG_CODE/plot_taylor.ncl
else
  echo "WARNING: plot_MON_climo must be turned on (=0)"
  echo "for set 14 TAYLOR DIAGRAM plots"
endif

if ($web_pages == 0) then
  $DIAG_HOME/code/ps2imgwww.csh set14 $image &
endif
endif

#*****************************************************************
# SET 15 - Annual Cycle Select Sites Plots
#*****************************************************************

if ($all_sets == 0 || $set_15 == 0) then

    setenv TEST_INPUT    ${test_path_climo}/${test_casename}
    setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_plotvars.nc
    if ($CNTL == OBS) then
	setenv CNTL_INPUT $OBS_DATA
    else
	setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}
	setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_plotvars.nc
    endif
    if (-e $TEST_PLOTVARS) then
	setenv NCDF_MODE write
    else
	setenv NCDF_MODE create
    endif   
    if ($plot_MON_climo == 0) then
	echo ' '
	echo SET 15 ANNUAL CYCLE SELECT SITES PLOTS
	echo ' '
	$NCL < $DIAG_CODE/plot_ac_select_sites.ncl
	else
	echo "WARNING: plot_MON_climo must be turned on (=0)"
	echo "for set 15 SELECT SITES plots"
    endif

    if ($web_pages == 0) then
	$DIAG_HOME/code/ps2imgwww.csh set15 $image &
    endif

endif

#*****************************************************************
# SET 16 - Budget Terms Select Sites Plots
#*****************************************************************
if ($all_sets == 0 || $set_16 == 0) then

    echo " "
    echo SET 16 BUDGET TERMS

    foreach name ($plots)
	setenv SEASON $name
	setenv TEST_INPUT    ${test_path_climo}/${test_casename}_${SEASON}_climo.nc  
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then
	    setenv CNTL_INPUT $OBS_DATA 
	else
	    setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc    
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif
	echo MAKING $SEASON PLOTS 
	$NCL < $DIAG_CODE/plot_budget_select_sites.ncl
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
    end

    if ($web_pages == 0) then
	$DIAG_CODE/ps2imgwww.csh set16 $image &
    endif

endif

#*****************************************************************
# WACCM SET 1 - LAT/PRESS CONTOUR PLOTS (VERTICAL LOG SCALE)
#*****************************************************************
if ($all_waccm_sets == 0 || $wset_1 == 0) then

    setenv USE_WACCM_LEVS 1

    echo " "
    echo "WACCM SET 1 VERTICAL CONTOUR PLOTS (LOG SCALE)"

    if ($CNTL == OBS) then
      echo WACCM set 1 does not support comparison with OBS
      echo Skipping WACCM set 1
    else

    foreach name ($plots)
        setenv SEASON $name
        setenv TEST_INPUT    ${test_path_climo}/${test_casename}_${SEASON}_climo.nc  
        setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_waccm_plotvars.nc

        setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc    
        setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_waccm_plotvars.nc

        if (-e $TEST_PLOTVARS) then
            setenv NCDF_MODE write
        else
            setenv NCDF_MODE create
        endif
        echo MAKING $SEASON PLOTS
        $NCL < $DIAG_CODE/plot_vertical_cons.ncl

        if ($NCDF_MODE == create) then
            setenv NCDF_MODE write
        endif
    end

    if ($web_pages == 0) then
        $DIAG_CODE/ps2imgwww.csh wset1 $image &
    endif

    endif # CNTL != OBS

    setenv USE_WACCM_LEVS 0

endif

#****************************************************************
#   CSET 1 - Chemistry TABLES OF Budgets 
#****************************************************************
if ($all_chem_sets == 0 || $cset_1 == 0) then

    echo " "
    echo CSET 1 TABLES OF MEANS, DIFFS, RMSES

    foreach name ($plots)
	setenv SEASON $name 
	setenv TEST_INPUT    ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
	setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
	if ($CNTL == OBS) then 
	    setenv CNTL_INPUT $OBS_DATA
	else
	    setenv CNTL_INPUT    ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
	    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
	endif
	if (-e $TEST_PLOTVARS) then
	    setenv NCDF_MODE write
	else
	    setenv NCDF_MODE create
	endif
	echo MAKING $SEASON CHEMISTRY TABLES 
	$NCL <  $DIAG_CODE/tables_chem.ncl
	echo MAKING $SEASON AEROSOL TABLES 
	$NCL <  $DIAG_CODE/tables_soa.ncl
	if ($NCDF_MODE == create) then
	    setenv NCDF_MODE write
	endif
    end
    if ($web_pages == 0) then
	mv *.asc $WEBDIR/cset1
    endif

endif
#*****************************************************************
# CSET 2 - LAT/PRESS CONTOUR PLOTS 
#*****************************************************************
if ($all_chem_sets == 0 || $cset_2 == 0) then
echo " "
echo CSET2 VERTICAL CONTOUR PLOTS

setenv USE_WACCM_LEVS 0
foreach name ($plots)
  setenv SEASON $name
  setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
  setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
  if ($CNTL == OBS) then
    setenv CNTL_INPUT $OBS_DATA
  else
    setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
    setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
  endif
  if (-e $TEST_PLOTVARS) then
    setenv NCDF_MODE write
  else
    setenv NCDF_MODE create
  endif
  echo MAKING $SEASON PLOTS
    if ($CNTL == OBS) then
     echo CSET2 does not support comparison with OBS
     echo Skipping CSET2 
   else
       ##if ($name == "ANN") then
       $NCL < $DIAG_CODE/plot_vertical_zonal_mean_chem.ncl
       $NCL < $DIAG_CODE/plot_vertical_zonal_mean_chem_perc.ncl
       ##endif
    endif
  if ($NCDF_MODE == create) then
     setenv NCDF_MODE write
  endif
end
if ($web_pages == 0) then
    $DIAG_CODE/ps2imgwww.csh cset2 $image &
endif
setenv USE_WACCM_LEVS 0

endif

#*****************************************************************
#   CSET 3  Ozonesonde comparisions
#****************************************************************
if ($all_chem_sets == 0 || $cset_3 == 0) then

    echo CSET 3 Chemistry COMPARISON TO OZONESONDES

    foreach name ($plots)
       setenv TEST_CASE ${test_path_climo}/${test_casename}
       if ($CNTL == OBS) then
         setenv STD_CASE NONE
       else
        setenv STD_CASE $cntl_in
       endif
       setenv SEASON $name
       
       echo $SEASON
       echo $name 
       if ($name == "ANN") then
         $NCL < $DIAG_CODE/profiles_station_regions_comp.ncl
         $NCL < $DIAG_CODE/profiles_station_regions_comp_strat.ncl
         $NCL < $DIAG_CODE/seasonal_cycle_o3_regions_comp.ncl
       if ($NCDF_MODE == create) then
            setenv NCDF_MODE write
       endif
       endif
    end
    if ($web_pages == 0) then
        $DIAG_CODE/ps2imgwww.csh cset3 $image &
    endif
endif

#*****************************************************************
#   CSET 4  Column O3/CO comparisions
#****************************************************************

if ($all_chem_sets == 0 || $cset_4 == 0) then

    echo CSET 4 Column O3 and CO COMPARISON

    foreach name ($plots)
       setenv TEST_CASE ${test_path_climo}/${test_casename}
       if ($CNTL == OBS) then
         setenv STD_CASE NONE
       else
        setenv STD_CASE $cntl_in
       endif
       setenv SEASON $name

       echo $SEASON
       echo Column O3 COMPARISON
       $NCL < $DIAG_CODE/plot_surface_mean_o3_col.ncl
       echo $name
       if ($name == "ANN") then
         echo Column O3 COMPARISON
         $NCL < $DIAG_CODE/plot_surface_mean_co_col.ncl
       endif
    end
    if ($web_pages == 0) then
        $DIAG_CODE/ps2imgwww.csh cset4 $image &
    endif
endif

#*****************************************************************
#   CSET 5  COMPARISON TO NOAA Aircraft
#****************************************************************

if ($all_chem_sets == 0 || $cset_5 == 0) then

    echo " "
     echo CSET 5 Chemistry COMPARISON TO NOAA Aircraft

    foreach name ($plots)
      setenv TEST_CASE ${test_path_climo}/${test_casename}
       if ($CNTL == OBS) then
         setenv STD_CASE NONE
       else
        setenv STD_CASE $cntl_in
       endif
       setenv SEASON $name
       if ($name == "ANN") then
        $NCL < $DIAG_CODE/profiles_aircraft_noaa.ncl
       endif
     end
     if ($web_pages == 0) then
       $DIAG_CODE/ps2imgwww.csh cset5 $image &
     endif
endif

#*****************************************************************
#   CSET 6  COMPARISON TO EMMONS Aircraft Climatology
#****************************************************************

if ($all_chem_sets == 0 || $cset_6 == 0) then

    echo " "
     echo CSET 6 Chemistry COMPARISON TO EMMONS Aircraft Climatology

    foreach name ($plots)
      setenv DATA_PLOTVARS ${test_path_diag}/data_aircraft_plotvars.nc
      setenv TEST_CASE ${test_path_climo}/${test_casename}
      setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_aircraft_plotvars.nc

       if ($CNTL == OBS) then
         setenv STD_CASE NONE
       else
        setenv STD_CASE $cntl_in
        setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_aircraft_plotvars.nc
       endif
       setenv SEASON $name
       if ($name == "ANN") then
        $NCL < $DIAG_CODE/profiles_aircraft_emmons.ncl
       if ($NCDF_MODE == create) then
            setenv NCDF_MODE write
       endif
       endif
     end
     if ($web_pages == 0) then
       $DIAG_CODE/ps2imgwww.csh cset6 $image &
     endif
endif

#*****************************************************************
#   CSET 7  Surface comparison ozone, co, improve 
#***************************************************************
if ($all_chem_sets == 0 || $cset_7 == 0) then

    echo CSET 7 Surface comparison ozone, CO, IMPROVE

    foreach name ($plots)
       setenv SEASON $name
       setenv TEST_INPUT ${test_path_climo}/${test_casename}_${SEASON}_climo.nc
       setenv TEST_PLOTVARS ${test_path_diag}/${test_casename}_${SEASON}_plotvars.nc
       if ($CNTL == OBS) then
         setenv CNTL_INPUT $OBS_DATA
       else
         setenv CNTL_INPUT ${cntl_path_climo}/${cntl_casename}_${SEASON}_climo.nc
         setenv CNTL_PLOTVARS ${test_path_diag}/${cntl_casename}_${SEASON}_plotvars.nc
       endif
       echo MAKING $SEASON PLOTS
       $NCL < $DIAG_CODE/plot_improve_scatter_pdf_mam3.ncl
       if ($NCDF_MODE == create) then
            setenv NCDF_MODE write
       endif
    end
    if ($web_pages == 0) then
        $DIAG_CODE/ps2imgwww.csh cset7 $image &
    endif
endif

#***************************************************************
# end of non-swift branch
#***************************************************************

else


#**************************************************************
#***************************************************************
# If using swift => beginning of use_swift branch
#***************************************************************
#**************************************************************
  set mydir = `pwd`

#***************************************************************
# Setup webpages and make tar file
if ($web_pages == 0) then
  setenv DENSITY $density
  if ($img_type == 0) then
    set image = png
  else
    if ($img_type == 1) then
      set image = gif
    else
      set image = jpg
    endif
  endif
  if ($p_type != ps) then
    echo ERROR: WEBPAGES ARE ONLY MADE FOR POSTSCRIPT PLOT TYPE
    exit
  endif
  if ($CNTL == OBS) then
    setenv WEBDIR ${test_path_diag}$test_casename-obs
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_obs $test_casename $image
    cd $test_path_diag
    set tarfile = ${test_casename}-obs.tar
  else          # model-to-model 
    setenv WEBDIR ${test_path_diag}$test_casename-$cntl_casename
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_2models $test_casename $cntl_casename $image
    cd $test_path_diag
    set tarfile = $test_casename-${cntl_casename}.tar
  endif
endif


  #---------------------------------------------------------------
  # Determine how to deal with the DJF season for the test dataset
  #---------------------------------------------------------------
  @ cnt = $test_first_yr
  @ cnt --
  set yearnum = ${test_rootname}`printf "%04d" ${cnt}`
  if ($test_filetype == "monthly_history") then
    if (! -e ${test_path_history}${yearnum}-12.nc ) then    # dec of previous year
       set test_djf = "NEXT"
    else
       set test_djf = "PREV"
    endif
    echo 'test_djf: ' $test_djf
  endif

 #--------------------------------------------------------------
 # Determine which plots need to be drawn
 #--------------------------------------------------------------
  echo 'four_seasons: ' $four_seasons
  echo 'plot_ANN_climo: ' $plot_ANN_climo
  echo 'plot_DJF_climo: ' $plot_DJF_climo
  echo 'plot_JJA_climo: ' $plot_JJA_climo
  echo 'plot_MAM_climo: ' $plot_MAM_climo
  echo 'plot_SON_climo: ' $plot_SON_climo
  if ($four_seasons == 0) then
        set plots = "ANN,DJF,MAM,JJA,SON"
  else
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 0 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 1) then
         set plots = "ANN,DJF"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 0 && \
         $plot_SON_climo == 1) then
         set plots = "ANN,MAM"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 0 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 1) then
         set plots = "ANN,JJA"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 0) then
         set plots = "ANN,SON"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 0 && \
         $plot_JJA_climo == 0 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 1) then
         set plots = "ANN,DJF,JJA"
     endif
     if ($plot_ANN_climo == 1 && \
         $plot_DJF_climo == 0 && \
         $plot_JJA_climo == 0 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 1) then
         set plots = "DJF,JJA"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 0 && \
         $plot_SON_climo == 0) then
         set plots = "ANN,MAM,SON"
     endif
     if ($plot_ANN_climo == 1 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 0 && \
         $plot_SON_climo == 0) then
         set plots = "MAM,SON"
     endif
     if ($plot_ANN_climo == 1 && \
         $plot_DJF_climo == 0 && \
         $plot_JJA_climo == 0 && \
         $plot_MAM_climo == 0 && \
         $plot_SON_climo == 0) then
         set plots = "DJF,MAM,JJA,SON"
     endif
     if ($plot_ANN_climo == 0 && \
         $plot_DJF_climo == 1 && \
         $plot_JJA_climo == 1 && \
         $plot_MAM_climo == 1 && \
         $plot_SON_climo == 1) then
         set plots = "ANN"
     endif
  endif
#****************************************************************
# For SET 12 - Create the station_ids file
#***************************************************************
if ($all_sets == 0 || $set_12 == 0 || $set_12 == 2) then
if (-e ${test_path_diag}station_ids) then
 \rm ${test_path_diag}station_ids
endif
if ($set_12 == 2) then    # all stations
  echo 56 >> ${WKDIR}station_ids
else
  if ($ascension_island == 0) then
    echo 0 >> ${WKDIR}station_ids
  endif
  if ($diego_garcia == 0) then
    echo 1 >> ${WKDIR}station_ids
  endif
  if ($truk_island == 0) then
    echo 2 >> ${WKDIR}station_ids
  endif
  if ($western_europe == 0) then
    echo 3 >> ${WKDIR}station_ids
  endif
  if ($ethiopia == 0) then
    echo 4 >> ${WKDIR}station_ids
  endif
  if ($resolute_canada == 0) then
    echo 5 >> ${WKDIR}station_ids
  endif
  if ($w_desert_australia == 0) then
    echo 6 >> ${WKDIR}station_ids
  endif
  if ($great_plains_usa == 0) then
    echo 7 >> ${WKDIR}station_ids
  endif
  if ($central_india == 0) then
    echo 8 >> ${WKDIR}station_ids
  endif
  if ($marshall_islands == 0) then
    echo 9 >> ${WKDIR}station_ids
  endif
  if ($easter_island == 0) then
    echo 10 >> ${WKDIR}station_ids
  endif
  if ($mcmurdo_antarctica == 0) then
    echo 11 >> ${WKDIR}station_ids
  endif
# skipped south pole antarctica - 12
  if ($panama == 0) then
    echo 13 >> ${WKDIR}station_ids
  endif
  if ($w_north_atlantic == 0) then
    echo 14 >> ${WKDIR}station_ids
  endif
  if ($singapore == 0) then
    echo 15 >> ${WKDIR}station_ids
  endif
  if ($manila == 0) then
    echo 16 >> ${WKDIR}station_ids
  endif
  if ($gilbert_islands == 0) then
    echo 17 >> ${WKDIR}station_ids
  endif
  if ($hawaii == 0) then
    echo 18 >> ${WKDIR}station_ids
  endif
  if ($san_paulo_brazil == 0) then
    echo 19 >> ${WKDIR}station_ids
  endif
  if ($heard_island == 0) then
    echo 20 >> ${WKDIR}station_ids
  endif
  if ($kagoshima_japan == 0) then
    echo 21 >> ${WKDIR}station_ids
  endif
  if ($port_moresby == 0) then
    echo 22 >> ${WKDIR}station_ids
  endif
  if ($san_juan_pr == 0) then
    echo 23 >> ${WKDIR}station_ids
  endif
  if ($western_alaska == 0) then
    echo 24 >> ${WKDIR}station_ids
  endif
  if ($thule_greenland == 0) then
    echo 25 >> ${WKDIR}station_ids
  endif
  if ($san_francisco_ca == 0) then
    echo 26 >> ${WKDIR}station_ids
  endif
  if ($denver_colorado == 0) then
    echo 27 >> ${WKDIR}station_ids
  endif
  if ($london_england == 0) then
    echo 28 >> ${WKDIR}station_ids
  endif
  if ($crete == 0) then
    echo 29 >> ${WKDIR}station_ids
  endif
  if ($tokyo_japan == 0) then
    echo 30 >> ${WKDIR}station_ids
  endif
  if ($sydney_australia == 0) then
    echo 31 >> ${WKDIR}station_ids
  endif
  if ($christchurch_nz == 0) then
    echo 32 >> ${WKDIR}station_ids
  endif
  if ($lima_peru == 0) then
    echo 33 >> ${WKDIR}station_ids
  endif
  if ($miami_florida == 0) then
    echo 34 >> ${WKDIR}station_ids
  endif
  if ($samoa == 0) then
    echo 35 >> ${WKDIR}station_ids
  endif
  if ($shipP_gulf_alaska == 0) then
    echo 36 >> ${WKDIR}station_ids
  endif
  if ($shipC_n_atlantic == 0) then
    echo 37 >> ${WKDIR}station_ids
  endif
  if ($azores == 0) then
    echo 38 >> ${WKDIR}station_ids
  endif
  if ($new_york_usa == 0) then
    echo 39 >> ${WKDIR}station_ids
  endif
  if ($darwin_australia == 0) then
    echo 40 >> ${WKDIR}station_ids
  endif
  if ($christmas_island == 0) then
    echo 41 >> ${WKDIR}station_ids
  endif
  if ($cocos_islands == 0) then
    echo 42 >> ${WKDIR}station_ids
  endif
  if ($midway_island == 0) then
    echo 43 >> ${WKDIR}station_ids
  endif
  if ($raoui_island == 0) then
    echo 44 >> ${WKDIR}station_ids
  endif
  if ($whitehorse_canada == 0) then
    echo 45 >> ${WKDIR}station_ids
  endif
  if ($oklahoma_city_ok == 0) then
    echo 46 >> ${WKDIR}station_ids
  endif
  if ($gibraltor == 0) then
    echo 47 >> ${WKDIR}station_ids
  endif
  if ($mexico_city == 0) then
    echo 48 >> ${WKDIR}station_ids
  endif
  if ($recife_brazil == 0) then
    echo 49 >> ${WKDIR}station_ids
  endif
  if ($nairobi_kenya == 0) then
    echo 50 >> ${WKDIR}station_ids
  endif
  if ($new_dehli_india == 0) then
    echo 51 >> ${WKDIR}station_ids
  endif
  if ($madras_india == 0) then
    echo 52 >> ${WKDIR}station_ids
  endif
  if ($danang_vietnam == 0) then
    echo 53 >> ${WKDIR}station_ids
  endif
  if ($yap_island == 0) then
    echo 54 >> ${WKDIR}station_ids
  endif
  if ($falkland_islands == 0) then
    echo 55 >> ${WKDIR}station_ids
  endif
endif
endif

#***************************************************************
# Setup webpages and make tar file
if ($web_pages == 0) then
  setenv DENSITY $density
  if ($img_type == 0) then
    set image = png
  else
    if ($img_type == 1) then
      set image = gif
    else
      set image = jpg
    endif
  endif
  if ($p_type != ps) then
    echo ERROR: WEBPAGES ARE ONLY MADE FOR POSTSCRIPT PLOT TYPE
    exit
  endif
  if ($CNTL == OBS) then
    setenv WEBDIR ${WKDIR}$test_casename-obs
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_obs $test_casename $image
    cd $WKDIR
    set tarfile = ${test_casename}-obs.tar
  else          # model-to-model 
    setenv WEBDIR ${WKDIR}$test_casename-$cntl_casename
    if (! -e $WEBDIR) mkdir $WEBDIR
    cd $WEBDIR
    $HTML_HOME/setup_2models $test_casename $cntl_casename $image 
    cd $WKDIR
    set tarfile = $test_casename-${cntl_casename}.tar
  endif
endif

#---------------------------------------------------------
# If weight_months == 1, set variables to null
#---------------------------------------------------------
if ($weight_months == 1) then
  set non_time_vars = " "   
else
   set non_time_vars = " "
endif

#---------------------------------------------------------
# Set RGB_FILE to null if c_type == MONO 
#---------------------------------------------------------
if ($c_type != COLOR) then
   setenv RGB_FILE " "
endif

# Set this to 0; WACCM sets can turn it on.
setenv USE_WACCM_LEVS 0

#---------------------------------------------------------
# Create yearly files that map where each month is located
#---------------------------------------------------------

if ($test_filetype == time_series) then
if ($test_compute_climo == 0 ) then
@ yr_end = $test_first_yr + $test_nyrs
@ yr_cnt = $test_first_yr - 1
  while ($yr_cnt <= $yr_end)
    set year_slice_file = ${test_path_climo}/${yr_cnt}_slice.txt
    $DIAG_CODE/find_time_series_year.pl ${test_path_climo}/test_file_list.txt \
                                        $yr_cnt \
                                        $test_path_climo \
                                        "null" \
                                        $year_slice_file
    @ yr_cnt = $yr_cnt + 1
  end
endif
endif

if ($cntl_filetype == time_series) then
if ($cntl_compute_climo == 0 ) then
@ yr_end = $cntl_first_yr + $cntl_nyrs
@ yr_cnt = $cntl_first_yr - 1
  while ($yr_cnt <= $yr_end)
    set year_slice_file = ${cntl_path_climo}/${yr_cnt}_slice.txt
    $DIAG_CODE/find_time_series_year.pl ${cntl_path_climo}/cntl_file_list.txt \
                                        $yr_cnt \
                                        $cntl_path_climo \
                                        "null" \
                                       $year_slice_file
   @ yr_cnt = $yr_cnt + 1
  end
endif
endif

cd $mydir

  if($CNTL != "OBS" ) then
     #---------------------------------------------------------------
     # Determine how to deal with the DJF season for the cntl dataset
     #---------------------------------------------------------------
     @ cnt = $cntl_first_yr
     @ cnt --
     set yearnum = ${cntl_rootname}`printf "%04d" ${cnt}`
     # echo ${cntl_path}${yearnum}-12.nc
     if ($cntl_filetype == "monthly_history") then
       if (! -e ${cntl_path_history}${yearnum}-12.nc ) then    # dec of previous year
          set cntl_djf = "NEXT"
       else
          set cntl_djf = "PREV"
       endif
       echo 'cntl_djf: ' $cntl_djf
     endif

     #------------------------------------------
     # Comparsion between two different datasets
     #------------------------------------------

      echo PLOTS: $plots

       cd $swift_scratch_dir

      swift -config $mydir/cf.properties \
      -sites.file $mydir/sites.xml  -tc.file $mydir/tc.data -cdm.file $mydir/fs.data \
      $mydir/swift/amwg_stats.swift -workdir=$test_path_diag -sig=$significance -test_inst=$test_inst -cntl_inst=$cntl_inst \
      -test_case=${test_casename} -test_djf=$test_djf -test_path=$test_path_history -test_nyrs=$test_nyrs -test_begin=$test_first_yr \
      -test_compute_climo=$test_compute_climo -cntl_compute_climo=$cntl_compute_climo \
      -test_path_climo=$test_path_climo -cntl_path_climo=$cntl_path_climo \
      -cntl_case=${cntl_casename} -cntl_djf=$cntl_djf -cntl_path=$cntl_path_history -cntl_nyrs=$cntl_nyrs -cntl_begin=$cntl_first_yr \
      -plot_ANN_climo=$plot_ANN_climo -plot_DJF_climo=$plot_DJF_climo \
      -plot_JJA_climo=$plot_JJA_climo -plot_MON_climo=$plot_MON_climo -plot_MAM_climo=$plot_MAM_climo -plot_SON_climo=$plot_SON_climo \
      -all_sets=$all_sets -set_1=$set_1 -set_2=$set_2 -set_3=$set_3 -set_4=$set_4 -set_4a=$set_4a -set_5=$set_5 -set_6=$set_6 \
      -set_7=$set_7 -set_8=$set_8 -set_9=$set_9 -set_10=$set_10 -set_11=$set_11 -set_12=$set_12 -set_13=$set_13 -set_14=$set_14 \
      -set_15=$set_15 -set_16=$set_16 -all_waccm_sets=$all_waccm_sets -all_chem_sets=$all_chem_sets -wset_1=$wset_1 -cset_1=$cset_1 \
      -cset_2=$cset_2 -cset_3=$cset_3 -cset_4=$cset_4 -cset_5=$cset_5 -cset_6=$cset_6 -cset_7=$cset_7 \
      -cntl=$CNTL -obs_data=$OBS_DATA -custom_names=$custom_names -casenames=$CASENAMES -case1=$CASE1 -case2=$CASE2 \
      -diag_code=$DIAG_CODE  -plots=$plots -plot_type=$PLOTTYPE -version=$DIAG_VERSION -color_type=$COLORTYPE -time_stamp=$TIMESTAMP \
      -web_pages=$web_pages -imageType=$image -webdir=$WEBDIR -rgb_file=$RGB_FILE -mg_micro=$MG_MICRO -paleo=$PALEO -land_mask1=$land_mask1 \
      -land_mask2=$land_mask2 -tick_marks=$TICKMARKS -sig_plot=$SIG_PLOT -sig_lvl=$SIG_LVL -diffs=$DIFF_PLOTS -significance=$significance \
      -diaghome=$DIAG_HOME -cam_data=$CAM35_DATA -cam_base=$TAYLOR_BASECASE -ncarg_root=$NCARG_ROOT -strip_off_vars=$strip_off_vars \
      -test_var_list=$test_var_list -cntl_var_list=$cntl_var_list -test_non_time_var_list=$test_non_time_var_list \
      -cntl_non_time_var_list=$cntl_non_time_var_list  -weight_months=$weight_months \
      -save_ncdfs=$save_ncdfs -delete_ps=$DELETEPS -conv_test=$test_rootname -conv_cntl=$cntl_rootname -test_res_in=$test_res_in \
      -test_res_out=$test_res_out -cntl_res_in=$cntl_res_in -cntl_res_out=$cntl_res_out -map_dir=$MAP_DATA -interp_method=$INTERP_METHOD \
      -test_grid=$test_grid -cntl_grid=$cntl_grid -test_filetype=$test_filetype -cntl_filetype=$cntl_filetype -use_waccm_levs=$USE_WACCM_LEVS

      set cntl_in = $cntl_out

      cd $mydir
   else

     echo 'Comparison against observations'
     #---------------------------------
     # Comparsion against observations
     #---------------------------------

       cd $swift_scratch_dir 

       swift -config $mydir/cf.properties \
      -sites.file $mydir/sites.xml  -tc.file $mydir/tc.data -cdm.file $mydir/fs.data \
      $mydir/swift/amwg_stats.swift -workdir=$test_path_diag -sig=$significance -test_inst=$test_inst \
      -test_case=${test_casename} -test_djf=$test_djf -test_path=$test_path_history -test_nyrs=$test_nyrs -test_begin=$test_first_yr \
      -test_path_climo=$test_path_climo -plot_ANN_climo=$plot_ANN_climo \
      -test_compute_climo=$test_compute_climo -cntl_compute_climo=$cntl_compute_climo -plot_DJF_climo=$plot_DJF_climo \
      -plot_JJA_climo=$plot_JJA_climo -plot_MON_climo=$plot_MON_climo -plot_MAM_climo=$plot_MAM_climo -plot_SON_climo=$plot_SON_climo \
      -all_sets=$all_sets -set_1=$set_1 -set_2=$set_2 -set_3=$set_3 -set_4=$set_4 -set_4a=$set_4a -set_5=$set_5 -set_6=$set_6 \
      -set_7=$set_7 -set_8=$set_8 -set_9=$set_9 -set_10=$set_10 -set_11=$set_11 -set_12=$set_12 -set_13=$set_13 -set_14=$set_14 \
      -set_15=$set_15 -set_16=$set_16 -all_waccm_sets=$all_waccm_sets -all_chem_sets=$all_chem_sets -wset_1=$wset_1 -cset_1=$cset_1 \
      -cset_2=$cset_2 -cset_3=$cset_3 -cset_4=$cset_4 -cset_5=$cset_5 -cset_6=$cset_6 -cset_7=$cset_7 \
      -cntl=$CNTL -obs_data=$OBS_DATA -custom_names=$custom_names -casenames=$CASENAMES -case1=$CASE1 -case2=$CASE2 \
      -diag_code=$DIAG_CODE -plots=$plots -plots=$plots -plot_type=$PLOTTYPE -version=$DIAG_VERSION -color_type=$COLORTYPE -time_stamp=$TIMESTAMP \
      -web_pages=$web_pages -imageType=$image -webdir=$WEBDIR -rgb_file=$RGB_FILE -mg_micro=$MG_MICRO -paleo=$PALEO -land_mask1=$land_mask1 \
      -land_mask2=$land_mask2 -tick_marks=$TICKMARKS -sig_plot=$SIG_PLOT -sig_lvl=$SIG_LVL -diffs=$DIFF_PLOTS -significance=$significance \
      -diaghome=$DIAG_HOME -cam_data=$CAM35_DATA -cam_base=$TAYLOR_BASECASE -ncarg_root=$NCARG_ROOT -strip_off_vars=$strip_off_vars \
      -test_var_list=$test_var_list -cntl_var_list=$cntl_var_list -test_non_time_var_list=$test_non_time_var_list -weight_months=$weight_months \
      -save_ncdfs=$save_ncdfs -delete_ps=$DELETEPS -conv_test=$test_rootname -conv_cntl=$cntl_rootname -test_res_in=$test_res_in \
      -test_res_out=$test_res_out -cntl_res_in=$cntl_res_in -cntl_res_out=$cntl_res_out -map_dir=$MAP_DATA -interp_method=$INTERP_METHOD \
      -test_grid=$test_grid -cntl_grid=$cntl_grid -cntl_non_time_var_list=$cntl_non_time_var_list -cntl_non_time_var_list=$cntl_non_time_var_list \
      -test_filetype=$test_filetype -cntl_filetype=$cntl_filetype -use_waccm_levs=$USE_WACCM_LEVS

      cd $mydir

   endif

   set test_in = $test_out

   rm -rf _concurrent
   rm -f $test_path_diag/*.tar
   rm -f $test_path_climo/dummy*
   rm -f ${test_path_climo}/*_slice.txt
   rm -f ${cntl_path_climo}/*_slice.txt

   if ($set_1 == 0) then
      if ($web_pages == 0) then
       mv *.asc $WEBDIR/set1
   endif
endif

endif # end of !use_swift  branch

#***************************************************************
# end of swift branch
#***************************************************************

EXIT:
wait          # wait for all child precesses to finish
echo ' '
# make tarfile of web pages
if ($web_pages == 0) then
  cd $WKDIR
  set tardir = $tarfile:r
  echo MAKING TAR FILE OF DIRECTORY $tardir
  tar -cf ${test_path_diag}$tarfile $tardir
  \rm -fr $WEBDIR
endif
# send email message
if ($email == 0) then
  echo `date` > email_msg
  echo MESSAGE FROM THE AMWG DIAGNOSTIC PACKAGE. >> email_msg
  echo THE PLOTS FOR $tardir ARE NOW READY! >> email_msg
  mail -s 'DIAG plots' $email_address < email_msg
  echo E-MAIL SENT
  \rm -f email_msg
endif  
# cleanup
if ($weight_months == 0) then
  \rm -f ${test_path_diag}*_unweighted.nc
endif
if ($save_ncdfs == 1) then
  echo "================== " CLEANING UP
  endif
  \rm -f ${test_path_diag}/${test_casename}*_plotvars.nc
  if ($CNTL == USER) then
    \rm -f ${test_path_diag}/${cntl_casename}*_plotvars.nc  
  endif
  if ($significance == 0) then
    \rm -f ${test_path_diag}/${test_casename}*_variance.nc
    if ($CNTL == USER) then
      \rm -f ${test_path_diag}/${cntl_casename}*_variance.nc     
    endif
  endif
endif 
echo ' '
echo NORMAL EXIT FROM SCRIPT
date
#***************************************************************
#***************************************************************
# Known Bugs
# 29mar10 ------ nanr - Should season plots missing
#    /set5_6/set5_[MAM,SON]_PRECIP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_ALBSURF_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_PS_c.png			! Plot not created
#    /set5_6/set5_[MAM,SON]_TTRP_TROP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_ALBEDO_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_ALBEDOC_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_TICLDIWP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_TICLDLIQWP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_TICLDLWP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_MEANPTOP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_MEANTTOP_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_MEANTAU_c.png		! Plot not created
#    /set5_6/set5_[MAM,SON]_TCLDAREA_c.png		! Plot not created
#***************************************************************