Commit ff787004 authored by Gaetan Lepage's avatar Gaetan Lepage
Browse files

python312Packages.dask-image: fix build

parent 5b73ca5a

pkgs/development/python-modules/dask-image/default.nix

+24 −3
Original line number Diff line number Diff line 
{

  lib,

  buildPythonPackage,

  pythonOlder,

  fetchFromGitHub,



  # build-system

  setuptools,

  setuptools-scm,



  # dependencies

  dask,

  numpy,

  scipy,

  pandas,

  pims,



  # tests

  pyarrow,

  pytestCheckHook,

  scikit-image,

}:
@@ -19,8 +25,6 @@ buildPythonPackage rec { 
  version = "2024.5.3";

  pyproject = true;



  disabled = pythonOlder "3.9";



  src = fetchFromGitHub {

    owner = "dask";

    repo = "dask-image";
@@ -28,6 +32,11 @@ buildPythonPackage rec { 
    hash = "sha256-kXCAqJ2Zgo/2Khvo2YcK+n4oGM219GyQ2Hsq9re1Lac=";

  };



  postPatch = ''

    substituteInPlace dask_image/ndinterp/__init__.py \

      --replace-fail "out_bounds.ptp(axis=1)" "np.ptp(out_bounds, axis=1)"

  '';



  build-system = [

    setuptools

    setuptools-scm
@@ -42,15 +51,27 @@ buildPythonPackage rec { 
  ];



  nativeCheckInputs = [

    pyarrow

    pytestCheckHook

    scikit-image

  ];



  pythonImportsCheck = [ "dask_image" ];



  disabledTests = [

    # The following tests are from 'tests/test_dask_image/test_ndmeasure/test_find_objects.py' and

    # fail because of errrors on numpy slices

    # AttributeError: 'str' object has no attribute 'start'

    "test_find_objects"

    "test_3d_find_objects"

    # AssertionError (comparing slices)

    "test_find_objects_with_empty_chunks"

  ];



  meta = {

    description = "Distributed image processing";

    homepage = "https://github.com/dask/dask-image";

    changelog = "https://github.com/dask/dask-image/releases/tag/v${version}";

    license = lib.licenses.bsdOriginal;

    maintainers = with lib.maintainers; [ GaetanLepage ];

  };