Commit fd230b25 authored by Alexis Praga's avatar Alexis Praga
Browse files

multiqc: 1.28 -> 1.29 

Polars is now a dependencies.
Running it with nix in some configuration fails to remove temporary
directories. Before skipping this step, it retries 10 times and doubles the waiting
time each time. We set max retries to 2.
parent dcb247a5

pkgs/by-name/mu/multiqc/package.nix

+12 −2
Original line number Diff line number Diff line
@@ -10,7 +10,7 @@ 


python3Packages.buildPythonApplication rec {

  pname = "multiqc";

  version = "1.28";

  version = "1.29";



  # Two data sources. One for the code, another for the test data

  srcs = [
@@ -19,7 +19,7 @@ python3Packages.buildPythonApplication rec { 
      owner = "MultiQC";

      repo = "MultiQC";

      tag = "v${version}";

      hash = "sha256-rYZaecoVAO1RE44XCw60aVwvWhKcZ/RrG3WpVRcLbuA=";

      hash = "sha256-KKLdDNf889lEbCyNpJFZoE8rNO50CRzNP4hKpKHRAcE=";

    })

    (fetchFromGitHub {

      owner = "MultiQC";
@@ -30,6 +30,15 @@ python3Packages.buildPythonApplication rec { 
    })

  ];



  # Multiqc cannot remove temporary directories in some case.

  # Default is 10 retries, lower it to 2

  postPatch = ''

    substituteInPlace multiqc/utils/util_functions.py \

      --replace-fail \

        "max_retries: int = 10," \

        "max_retries: int = 2,"

  '';



  sourceRoot = "multiqc";



  dependencies = with python3Packages; [
@@ -43,6 +52,7 @@ python3Packages.buildPythonApplication rec { 
    numpy

    packaging

    requests

    polars

    pillow

    plotly

    pyyaml