Unverified Commit f8dd50d2 authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

Merge pull request #222582 from bcdarwin/python3-simpleitk 

python310Packages.simpleitk: init at 2.2.1
parents 5b67ec7a 157285ff

pkgs/development/libraries/itk/generic.nix

+16 −5
Original line number Diff line number Diff line
@@ -3,10 +3,7 @@ 
{ lib, stdenv, fetchFromGitHub, cmake, makeWrapper

, pkg-config, libX11, libuuid, xz, vtk, Cocoa }:



stdenv.mkDerivation rec {

  pname = "itk";

  inherit version;



let

  itkGenericLabelInterpolatorSrc = fetchFromGitHub {

    owner = "InsightSoftwareConsortium";

    repo = "ITKGenericLabelInterpolator";
@@ -21,6 +18,18 @@ stdenv.mkDerivation rec { 
    hash = "sha256-deJbza36c0Ohf9oKpO2T4po37pkyI+2wCSeGL4r17Go=";

  };



  itkSimpleITKFiltersSrc = fetchFromGitHub {

    owner = "InsightSoftwareConsortium";

    repo = "ITKSimpleITKFilters";

    rev = "bb896868fc6480835495d0da4356d5db009592a6";

    hash = "sha256-MfaIA0xxA/pzUBSwnAevr17iR23Bo5iQO2cSyknS3o4=";

  };

in



stdenv.mkDerivation {

  pname = "itk";

  inherit version;



  src = fetchFromGitHub {

    owner = "InsightSoftwareConsortium";

    repo = "ITK";
@@ -36,6 +45,7 @@ stdenv.mkDerivation rec { 
      --replace "@OPENJPEG_INSTALL_LIB_DIR@" "@OPENJPEG_INSTALL_FULL_LIB_DIR@"

    ln -sr ${itkGenericLabelInterpolatorSrc} Modules/External/ITKGenericLabelInterpolator

    ln -sr ${itkAdaptiveDenoisingSrc} Modules/External/ITKAdaptiveDenoising

    ln -sr ${itkSimpleITKFiltersSrc} Modules/External/ITKSimpleITKFilters

  '';



  cmakeFlags = [
@@ -45,6 +55,7 @@ stdenv.mkDerivation rec { 
    "-DModule_ITKMINC=ON"

    "-DModule_ITKIOMINC=ON"

    "-DModule_ITKIOTransformMINC=ON"

    "-DModule_SimpleITKFilters=ON"

    "-DModule_ITKVtkGlue=ON"

    "-DModule_ITKReview=ON"

    "-DModule_MGHIO=ON"
@@ -69,7 +80,7 @@ stdenv.mkDerivation rec { 


  meta = {

    description = "Insight Segmentation and Registration Toolkit";

    homepage = "https://www.itk.org/";

    homepage = "https://www.itk.org";

    license = lib.licenses.asl20;

    maintainers = with lib.maintainers; [viric];

  };

pkgs/development/libraries/simpleitk/default.nix

+1 −3
Original line number Diff line number Diff line
@@ -4,12 +4,10 @@ stdenv.mkDerivation rec { 
  pname = "simpleitk";

  version = "2.2.1";



  outputs = [ "out" "dev" ];



  src = fetchFromGitHub {

    owner = "SimpleITK";

    repo = "SimpleITK";

    rev = "v${version}";

    rev = "refs/tags/v${version}";

    hash = "sha256-0YxmixUTXpjegZQv7DDCNTWFTH8QEWqQQszee7aQ5EI=";

  };

pkgs/development/python-modules/simpleitk/default.nix

0 → 100644
+27 −0
Original line number Diff line number Diff line 
{ lib

, buildPythonPackage

, pythonOlder

, fetchFromGitHub

, cmake

, swig4

, itk

, numpy

, simpleitk

, scikit-build

}:



buildPythonPackage rec {

  inherit (simpleitk) pname version src meta;

  format = "pyproject";

  disabled = pythonOlder "3.8";



  sourceRoot = "source/Wrapping/Python";

  preBuild = ''

    make

  '';



  nativeBuildInputs = [ cmake swig4 scikit-build ];

  propagatedBuildInputs = [ itk simpleitk numpy ];



  pythonImportsCheck = [ "SimpleITK" ];

}

pkgs/top-level/python-packages.nix

+4 −0
Original line number Diff line number Diff line
@@ -10828,6 +10828,10 @@ self: super: with self; { 


  simplehound = callPackage ../development/python-modules/simplehound { };



  simpleitk = callPackage ../development/python-modules/simpleitk {

    inherit (pkgs) simpleitk;

  };



  simplejson = callPackage ../development/python-modules/simplejson { };



  simplekml = callPackage ../development/python-modules/simplekml { };