libsbml: init at 5.20.2

{

  lib,

  stdenv,

  fetchFromGitHub,

  fetchpatch,

  cmake,

  pkg-config,

  bzip2,

  libxml2,

  swig,

}:

stdenv.mkDerivation (attrs: {

  pname = "libsbml";

  version = "5.20.2";

  src = fetchFromGitHub {

    owner = "sbmlteam";

    repo = "libsbml";

    rev = "v${attrs.version}";

    hash = "sha256-8JT2r0zuf61VewtZaOAccaOUmDlQPnllA0fXE9rT5X8=";

  };

  patches = [

    # This should be in next release, remember to remove fetchpatch

    (fetchpatch {

      name = "fix-xmlerror-conversion.patch";

      url = "https://github.com/sbmlteam/libsbml/pull/358.patch";

      hash = "sha256-uirG6XJ+w0hqBUEAGDnzhHoVtJVRdN1eqBYeneKMBao=";

    })

  ];

  nativeBuildInputs = [

    cmake

    pkg-config

    swig

  ];

  buildInputs = [

    bzip2.dev

    libxml2

  ];

  # libSBML doesn't always make use of pkg-config

  cmakeFlags = [

    "-DLIBXML_INCLUDE_DIR=${lib.getDev libxml2}/include/libxml2"

    "-DLIBXML_LIBRARY=${lib.getLib libxml2}/lib/libxml2${stdenv.hostPlatform.extensions.sharedLibrary}"

    "-DPKG_CONFIG_EXECUTABLE=${lib.getBin pkg-config}/bin/pkg-config"

    "-DSWIG_EXECUTABLE=${lib.getBin swig}/bin/swig"

  ];

  meta = with lib; {

    description = "Library for manipulating Systems Biology Markup Language (SBML)";

    homepage = "https://github.com/sbmlteam/libsbml";

    license = licenses.lgpl21Only;

    maintainers = [maintainers.kupac];

    platforms = platforms.all;

  };

})