python312Packages.bayespy: add missing dependency, clean up

{ stdenv, lib, buildPythonPackage, fetchPypi, pythonOlder

, pytestCheckHook, nose, glibcLocales, fetchpatch

, numpy, scipy, matplotlib, h5py }:

{

  lib,

  buildPythonPackage,

  fetchFromGitHub,

  pythonOlder,

  setuptools,

  numpy,

  scipy,

  h5py,

  truncnorm,

  pytestCheckHook,

}:

buildPythonPackage rec {

  pname = "bayespy";

  version = "0.6.1";

  format = "setuptools";

  pyproject = true;

  # Python 2 not supported and not some old Python 3 because MPL doesn't support

  # them properly.

  disabled = pythonOlder "3.4";

  src = fetchPypi {

    inherit pname version;

    sha256 = "sha256-3N8w/LiTLsDZbHp3z26FvDg3vStB2l3XkIWx+Mma1G0=";

  src = fetchFromGitHub {

    owner = "bayespy";

    repo = "bayespy";

    rev = "refs/tags/${version}";

    hash = "sha256-X7CwJBrKHlU1jqMkt/7XEzaiwul1Yzkb/V64lXG4Aqo=";

  };

  nativeCheckInputs = [ pytestCheckHook nose glibcLocales ];

  postPatch = ''

    substituteInPlace versioneer.py \

      --replace-fail SafeConfigParser ConfigParser \

      --replace-fail readfp read_file

  '';

  propagatedBuildInputs = [ numpy scipy matplotlib h5py ];

  build-system = [ setuptools ];

  disabledTests = [

    # Assertion error

    "test_message_to_parents"

  dependencies = [

    numpy

    scipy

    h5py

    truncnorm

  ];

  nativeCheckInputs = [ pytestCheckHook ];

  pythonImportsCheck = [ "bayespy" ];

  meta = with lib; {