python312Packages.phik: fix dependencies, clean up (e8d32a3c) · Commits · nix / nixpkgs

pkgs/development/python-modules/phik/default.nix

+13 −35

Original line number	Diff line number	Diff line
		@@ -3,20 +3,17 @@
		, cmake
		, fetchFromGitHub
		, joblib
		, jupyter
		, jupyter-client
		, matplotlib
		, nbconvert
		, ninja
		, numba
		, numpy
		, pandas
		, pathspec
		, pyproject-metadata
		, pybind11
		, pytestCheckHook
		, pythonOlder
		, scikit-build
		, scikit-build-core
		, scipy
		, setuptools
		}:

		buildPythonPackage rec {
		@@ -24,7 +21,7 @@ buildPythonPackage rec {
		version = "0.12.4";
		pyproject = true;

		disabled = pythonOlder "3.7";
		disabled = pythonOlder "3.8";

		src = fetchFromGitHub {
		owner = "KaveIO";
		@@ -33,58 +30,39 @@ buildPythonPackage rec {
		hash = "sha256-YsH7vVn6gzejunUjUY/RIcvWtaQ/W1gbciJWKi5LDTk=";
		};

		nativeBuildInputs = [
		build-system = [
		cmake
		ninja
		scikit-build
		setuptools
		pathspec
		pybind11
		pyproject-metadata
		scikit-build-core
		];

		propagatedBuildInputs = [
		dependencies = [
		joblib
		matplotlib
		numpy
		scipy
		pandas
		matplotlib
		numba
		pybind11
		scipy
		];

		nativeCheckInputs = [
		pytestCheckHook
		nbconvert
		jupyter
		jupyter-client
		];

		# Uses setuptools to drive build process
		# Uses scikit-build-core to drive build process
		dontUseCmakeConfigure = true;

		pythonImportsCheck = [
		"phik"
		];

		postInstall = ''
		rm -r $out/bin
		'';

		preCheck = ''
		# import from $out
		rm -r phik
		'';

		disabledTests = [
		# TypeError: 'numpy.float64' object cannot be interpreted as an integer
		# https://github.com/KaveIO/PhiK/issues/73
		"test_significance_matrix_hybrid"
		"test_significance_matrix_mc"
		];

		disabledTestPaths = [
		# Don't test integrations
		"tests/phik_python/integration/"
		];

		meta = with lib; {
		description = "Phi_K correlation analyzer library";
		longDescription = ''