Unverified Commit e3b62b9f authored by Nick Cao's avatar Nick Cao Committed by GitHub
Browse files

deeptools: 3.5.5 -> 3.5.6 (#381289)

parents 63a372c7 0669232b

pkgs/by-name/de/deeptools/package.nix

+16 −19
Original line number Diff line number Diff line 
{

  lib,

  python3,

  python3Packages,

  fetchFromGitHub,

  addBinToPathHook,

}:



python3.pkgs.buildPythonApplication rec {

python3Packages.buildPythonApplication rec {

  pname = "deeptools";

  version = "3.5.5";

  version = "3.5.6";

  pyproject = true;



  src = fetchFromGitHub {

    owner = "deeptools";

    repo = "deepTools";

    tag = version;

    hash = "sha256-2kSlL7Y5f/FjVtStnmz+GlTw2oymrtxOCaXlqgbQ7FU=";

    hash = "sha256-dxXlOvOjF4KSc5YO+1A5hlp95sfeyPSbmp93tihm7Vo=";

  };



  nativeBuildInputs = with python3.pkgs; [

  build-system = with python3Packages; [

    setuptools

  ];



  propagatedBuildInputs = with python3.pkgs; [

  dependencies = with python3Packages; [

    numpy

    numpydoc

    scipy

    py2bit

    pybigwig

    pysam

    matplotlib

    pysam

    numpydoc

    pybigwig

    py2bit

    plotly

    deeptoolsintervals

    importlib-metadata

  ];



  nativeCheckInputs = with python3.pkgs; [

  nativeCheckInputs = with python3Packages; [

    pytestCheckHook

    addBinToPathHook

  ];



  preCheck = ''

    export PATH="$out/bin:$PATH"

  '';



  disabledTestPaths = [

    # tests trip on `len(sys.argv) == 1`

    "deeptools/test/test_bigwigAverage.py"
@@ -49,7 +46,7 @@ python3.pkgs.buildPythonApplication rec { 
    "deeptools/test/test_multiBamSummary.py"

  ];



  meta = with lib; {

  meta = {

    homepage = "https://deeptools.readthedocs.io/en/develop";

    description = "Tools for exploring deep DNA sequencing data";

    longDescription = ''
@@ -60,10 +57,10 @@ python3.pkgs.buildPythonApplication rec { 
      publication-ready visualizations to identify enrichments and for functional

      annotations of the genome.

    '';

    license = with licenses; [

    license = with lib.licenses; [

      mit

      bsd3

    ];

    maintainers = with maintainers; [ scalavision ];

    maintainers = with lib.maintainers; [ scalavision ];

  };

}