Unverified Commit e28384a4 authored by Fabian Affolter's avatar Fabian Affolter Committed by GitHub
Browse files

Merge pull request #231808 from fabaff/numpyro-fix 

python310Packages.numpyro: add missing input for tests
parents 134a0791 e639bfd1

pkgs/development/python-modules/arviz/default.nix

+7 −7
Original line number Diff line number Diff line
@@ -2,6 +2,7 @@ 
, buildPythonPackage

, fetchFromGitHub

, emcee

, h5netcdf

, matplotlib

, netcdf4

, numba
@@ -31,7 +32,7 @@ 


buildPythonPackage rec {

  pname = "arviz";

  version = "0.15.0";

  version = "0.15.1";

  format = "setuptools";



  disabled = pythonOlder "3.7";
@@ -40,10 +41,11 @@ buildPythonPackage rec { 
    owner = "arviz-devs";

    repo = pname;

    rev = "refs/tags/v${version}";

    hash = "sha256-LcdITCT9Bvycfj/taXhzkjn4IfZrxWX9MYXD6+MifOs=";

    hash = "sha256-jjA+yltvpPZldIxXXqu1bXCLqpiU5/NBYTPlI9ImGVs=";

  };



  propagatedBuildInputs = [

    h5netcdf

    matplotlib

    netcdf4

    numpy
@@ -80,11 +82,6 @@ buildPythonPackage rec { 
    "arviz/tests/base_tests/"

  ];



  disabledTestPaths = [

    # Remove tests as dependency creates a circular dependency

    "arviz/tests/external_tests/test_data_pymc.py"

  ];



  disabledTests = [

    # Tests require network access

    "test_plot_separation"
@@ -94,6 +91,8 @@ buildPythonPackage rec { 
    "test_plot_kde"

    "test_plot_kde_2d"

    "test_plot_pair"

    # Array mismatch

    "test_plot_ts"

  ];



  pythonImportsCheck = [
@@ -103,6 +102,7 @@ buildPythonPackage rec { 
  meta = with lib; {

    description = "Library for exploratory analysis of Bayesian models";

    homepage = "https://arviz-devs.github.io/arviz/";

    changelog = "https://github.com/arviz-devs/arviz/blob/v${version}/CHANGELOG.md";

    license = licenses.asl20;

    maintainers = with maintainers; [ omnipotententity ];

  };

pkgs/development/python-modules/h5netcdf/default.nix

+5 −3
Original line number Diff line number Diff line
@@ -21,6 +21,8 @@ buildPythonPackage rec { 
    hash = "sha256-kyw7Vzvtc3Dr/J6ALNYPGk2lI277EbNu7/iXMk12v1Y=";

  };



  SETUPTOOLS_SCM_PRETEND_VERSION = version;



  nativeBuildInputs = [

    setuptools-scm

  ];

pkgs/development/python-modules/numpyro/default.nix

+7 −0
Original line number Diff line number Diff line
@@ -7,6 +7,7 @@ 
, numpy

, pytestCheckHook

, pythonOlder

, tensorflow-probability

, tqdm

}:
@@ -31,6 +32,7 @@ buildPythonPackage rec { 
  ];



  nativeCheckInputs = [

    tensorflow-probability

    pytestCheckHook

  ];
@@ -46,11 +48,16 @@ buildPythonPackage rec { 
    "test_gamma_poisson"

    "test_gof"

    "test_hpdi"

    "test_kl_dirichlet_dirichlet"

    "test_kl_univariate"

    "test_mean_var"

    # Tests want to download data

    "data_load"

    "test_jsb_chorales"

    # RuntimeWarning: overflow encountered in cast

    "test_zero_inflated_logits_probs_agree"

    # NameError: unbound axis name: _provenance

    "test_model_transformation"

  ];



  meta = with lib; {