Merge pull request #219377 from fabaff/pybigwig-bump

{ lib

, buildPythonPackage

, fetchPypi

, pytest

, fetchFromGitHub

, numpy

, pytestCheckHook

, pythonOlder

, zlib

}:

buildPythonPackage rec {

  pname = "pyBigWig";

  version = "0.3.18";

  pname = "pybigwig";

  version = "0.3.20";

  format = "setuptools";

  src = fetchPypi {

    inherit pname version;

    sha256 = "4c2a8c571b4100ad7c4c318c142eb48558646be52aaab28215a70426f5be31bc";

  disabled = pythonOlder "3.7";

  src = fetchFromGitHub {

    owner = "deeptools";

    repo = "pyBigWig";

    rev = "refs/tags/${version}";

    hash = "sha256-uYKxM0HOG4fus5geBFjbfbv6G1kDvMaAwhk0w/e1YII=";

  };

  buildInputs = [ zlib ];

  buildInputs = [

    zlib

  ];

  nativeCheckInputs = [

    numpy

    pytestCheckHook

  ];

  pythonImportsCheck = [

    "pyBigWig"

  ];

  nativeCheckInputs = [ numpy pytest ];

  pytestFlagsArray = [

    "pyBigWigTest/test*.py"

  ];

  disabledTests = [

    # Test file is donwloaded from GitHub

    "testAll"

    "testBigBed"

    "testFoo"

    "testNumpyValues"

  ];

  meta = with lib; {

    homepage = "https://github.com/deeptools/pyBigWig";

    description = "File access to bigBed files, and read and write access to bigWig files";

    longDescription = ''

      A python extension, written in C, for quick access to bigBed files

      A Python extension, written in C, for quick access to bigBed files

      and access to and creation of bigWig files. This extension uses

      libBigWig for local and remote file access.

    '';

    homepage = "https://github.com/deeptools/pyBigWig";

    changelog = "https://github.com/deeptools/pyBigWig/releases/tag/${version}";

    license = licenses.mit;

    maintainers = with maintainers; [ scalavision ];

  };