Unverified Commit e1b21eaa authored by Gaétan Lepage's avatar Gaétan Lepage Committed by GitHub
Browse files

python312Packages.papermill: fix, cleanup (#400928)

parents 4fdf00c2 8965dab3

pkgs/development/python-modules/bash-kernel/default.nix

+15 −11
Original line number Diff line number Diff line 
{

  lib,

  buildPythonPackage,

  fetchPypi,

  fetchFromGitHub,

  replaceVars,

  bashInteractive,

  flit-core,

  filetype,

  ipykernel,

  python,

  pexpect,

  bashInteractive,

  replaceVars,

  writableTmpDirAsHomeHook,

  python,

}:



buildPythonPackage rec {
@@ -16,10 +17,11 @@ buildPythonPackage rec { 
  version = "0.10.0";

  pyproject = true;



  src = fetchPypi {

    pname = "bash_kernel";

    inherit version;

    hash = "sha256-LtWgpBbEGNHXUecVBb1siJ4SFXREtQxCh6aF2ndcKMo=";

  src = fetchFromGitHub {

    owner = "takluyver";

    repo = "bash_kernel";

    tag = version;

    hash = "sha256-ugFMcQx1B1nKoO9rhb6PMllRcoZi0O4B9um8dOu5DU4=";

  };



  patches = [
@@ -36,9 +38,9 @@ buildPythonPackage rec { 
    pexpect

  ];



  preBuild = ''

    export HOME=$TMPDIR

  '';

  nativeBuildInputs = [

    writableTmpDirAsHomeHook

  ];



  postInstall = ''

    ${python.pythonOnBuildForHost.interpreter} -m bash_kernel.install --prefix $out
@@ -59,6 +61,8 @@ buildPythonPackage rec { 
    runHook postCheck

  '';



  __darwinAllowLocalNetworking = true;



  meta = {

    description = "Bash Kernel for Jupyter";

    homepage = "https://github.com/takluyver/bash_kernel";

pkgs/development/python-modules/papermill/default.nix

+46 −30
Original line number Diff line number Diff line 
{

  lib,

  stdenv,

  aiohttp,

  ansicolors,

  azure-datalake-store,

  azure-identity,

  azure-storage-blob,

  boto3,

  buildPythonPackage,

  fetchFromGitHub,



  # build-system

  setuptools,



  # dependencies

  ansicolors,

  click,

  entrypoints,

  fetchFromGitHub,

  gcsfs,

  ipykernel,

  moto,

  nbclient,

  nbformat,

  pyarrow,

  pygithub,

  pytest-mock,

  pytestCheckHook,

  pythonAtLeast,

  pythonOlder,

  pyyaml,

  requests,

  setuptools,

  tenacity,

  tqdm,

  pythonAtLeast,

  aiohttp,



  # optional-dependencies

  azure-datalake-store,

  azure-identity,

  azure-storage-blob,

  gcsfs,

  pygithub,

  pyarrow,

  boto3,



  # tests

  ipykernel,

  moto,

  pytest-mock,

  pytestCheckHook,

  versionCheckHook,

  writableTmpDirAsHomeHook,

}:



buildPythonPackage rec {
@@ -34,8 +43,6 @@ buildPythonPackage rec { 
  version = "2.6.0";

  pyproject = true;



  disabled = pythonOlder "3.8";



  src = fetchFromGitHub {

    owner = "nteract";

    repo = "papermill";
@@ -46,15 +53,15 @@ buildPythonPackage rec { 
  build-system = [ setuptools ];



  dependencies = [

    ansicolors

    click

    pyyaml

    nbformat

    entrypoints

    nbclient

    tqdm

    nbformat

    pyyaml

    requests

    entrypoints

    tenacity

    ansicolors

    tqdm

  ] ++ lib.optionals (pythonAtLeast "3.12") [ aiohttp ];



  optional-dependencies = {
@@ -75,17 +82,25 @@ buildPythonPackage rec { 
      moto

      pytest-mock

      pytestCheckHook

      versionCheckHook

      writableTmpDirAsHomeHook

    ]

    ++ optional-dependencies.azure

    ++ optional-dependencies.s3

    ++ optional-dependencies.gcs;



  preCheck = ''

    export HOME=$(mktemp -d)

  '';

  versionCheckProgramArg = "--version";



  pythonImportsCheck = [ "papermill" ];



  # Using pytestFlagsArray to prevent disabling false positives

  pytestFlagsArray = [

    # AssertionError: 'error' != 'display_data'

    "--deselect=papermill/tests/test_execute.py::TestBrokenNotebook2::test"



    # AssertionError: '\x1b[31mSystemExit\x1b[39m\x1b[31m:\x1b[39m 1\n' != '\x1b[0;31mSystemExit\x1b[0m\x1b[0;31m:\x1b[0m 1\n'

    "--deselect=papermill/tests/test_execute.py::TestOutputFormatting::test_output_formatting"

  ];



  disabledTests =

    [

      # pytest 8 compat
@@ -103,10 +118,11 @@ buildPythonPackage rec { 


  __darwinAllowLocalNetworking = true;



  meta = with lib; {

  meta = {

    description = "Parametrize and run Jupyter and interact with notebooks";

    homepage = "https://github.com/nteract/papermill";

    license = licenses.bsd3;

    changelog = "https://papermill.readthedocs.io/en/latest/changelog.html";

    license = lib.licenses.bsd3;

    maintainers = [ ];

    mainProgram = "papermill";

  };