Commit dc622dce authored by Alexander Kiselyov's avatar Alexander Kiselyov Committed by Emery Hemingway
Browse files

petsc: removed default unfree dependencies

parent 771c5644

pkgs/by-name/pe/petsc/package.nix

+36 −43
Original line number Diff line number Diff line
@@ -15,6 +15,7 @@ 
  hdf5,

  metis,

  parmetis,

  withParmetis ? false,

  pkg-config,

  p4est,

  zlib, # propagated by p4est but required by petsc
@@ -36,7 +37,6 @@ stdenv.mkDerivation rec { 
  };



  inherit mpiSupport;

  withp4est = petsc-withp4est;



  strictDeps = true;

  nativeBuildInputs = [
@@ -47,7 +47,7 @@ stdenv.mkDerivation rec { 
  buildInputs = [

    blas

    lapack

  ] ++ lib.optional hdf5-support hdf5 ++ lib.optional withp4est p4est;

  ] ++ lib.optional hdf5-support hdf5 ++ lib.optional petsc-withp4est p4est ++ lib.optionals withParmetis [ metis parmetis ];



  prePatch = lib.optionalString stdenv.isDarwin ''

    substituteInPlace config/install.py \
@@ -60,49 +60,42 @@ stdenv.mkDerivation rec { 
  # These messages contaminate test output, which makes the quicktest suite to fail. The patch adds filtering for these messages.

  patches = [ ./filter_mpi_warnings.patch ];



  preConfigure = ''

    patchShebangs ./lib/petsc/bin

    configureFlagsArray=(

      $configureFlagsArray

      ${

        if !mpiSupport then

          ''

            "--with-mpi=0"

          ''

        else

          ''

  configureFlags = [

    "--with-blas=1"

    "--with-lapack=1"

    "--with-scalar-type=${petsc-scalar-type}"

    "--with-precision=${petsc-precision}"

    "--with-mpi=${if mpiSupport then "1" else "0"}"

  ] ++ lib.optionals mpiSupport [

    "--CC=mpicc"

    "--with-cxx=mpicxx"

    "--with-fc=mpif90"

            "--with-mpi=1"

  ] ++ lib.optionals (mpiSupport && withParmetis) [

    "--with-metis=1"

    "--with-metis-dir=${metis}"

    "--with-parmetis=1"

    "--with-parmetis-dir=${parmetis}"

          ''

      }

      ${lib.optionalString withp4est ''

  ] ++ lib.optionals petsc-optimized [

    "--with-debugging=0"

    "COPTFLAGS=-O3"

    "FOPTFLAGS=-O3"

    "CXXOPTFLAGS=-O3"

    "CXXFLAGS=-O3"

  ];

  preConfigure = ''

    patchShebangs ./lib/petsc/bin

  '' + lib.optionalString petsc-withp4est ''

    configureFlagsArray+=(

      "--with-p4est=1"

      "--with-zlib-include=${zlib.dev}/include"

      "--with-zlib-lib=-L${zlib}/lib -lz"

      ''}

      ${lib.optionalString hdf5-support ''

    )

  '' + lib.optionalString hdf5-support ''

    configureFlagsArray+=(

      "--with-hdf5=1"

      "--with-hdf5-fortran-bindings=1"

        "--with-hdf5-lib=-L${hdf5}/lib -lhdf5"

      "--with-hdf5-include=${hdf5.dev}/include"

      ''}

      "--with-blas=1"

      "--with-lapack=1"

      "--with-scalar-type=${petsc-scalar-type}"

      "--with-precision=${petsc-precision}"

      ${lib.optionalString petsc-optimized ''

        "--with-debugging=0"

        COPTFLAGS='-O3'

        FOPTFLAGS='-O3'

        CXXOPTFLAGS='-O3'

        CXXFLAGS='-O3'

      ''}

      "--with-hdf5-lib=-L${hdf5}/lib -lhdf5"

    )

  '';