Commit da053191 authored by Alexis Praga's avatar Alexis Praga
Browse files

dragmap: fix compilation issue 

Missing include for Boost.
Upstream PR: https://github.com/Illumina/DRAGMAP/pull/66
parent 0d02ff33

pkgs/by-name/dr/dragmap/boost-iterator-range.patch

0 → 100644
+12 −0
Original line number Diff line number Diff line 
diff --git a/src/lib/map/Mapper.cpp b/src/lib/map/Mapper.cpp

index 6eaa2c5..781988c 100644

--- a/src/lib/map/Mapper.cpp

+++ b/src/lib/map/Mapper.cpp

@@ -22,6 +22,7 @@

 //#include "common/Crc32Hw.hpp"

 #include "common/DragenLogger.hpp"

 #include "map/Mapper.hpp"

+#include <boost/range/iterator_range.hpp>

 

 namespace dragenos {

 namespace map {

pkgs/by-name/dr/dragmap/package.nix

+10 −4
Original line number Diff line number Diff line
@@ -33,6 +33,10 @@ stdenv.mkDerivation (finalAttrs: { 
    # Add missing include cstdint.  Upstream does not accept PR. Issue opened at

    # https://github.com/Illumina/DRAGMAP/issues/63

    ./cstdint.patch



    # Missing import in Mapper.cpp

    # Issue opened upstream https://github.com/Illumina/DRAGMAP/pull/66

    ./boost-iterator-range.patch

  ];



  env = {
@@ -53,7 +57,7 @@ stdenv.mkDerivation (finalAttrs: { 
  # Tests are launched by default from makefile

  doCheck = false;



  meta = with lib; {

  meta = {

    description = "Open Source version of Dragen mapper for genomics";

    mainProgram = "dragen-os";

    longDescription = ''
@@ -61,8 +65,10 @@ stdenv.mkDerivation (finalAttrs: { 
      which the Illumina team created to procude the same results as their

      proprietary DRAGEN hardware.

    '';

    license = licenses.gpl3;

    platforms = platforms.unix;

    maintainers = with maintainers; [ apraga ];

    homepage = "https://github.com/Illumina/DRAGMAP";

    changelog = "https://github.com/Illumina/DRAGMAP/releases/tag/${finalAttrs.version}";

    license = lib.licenses.gpl3;

    platforms = [ "x86_64-linux" ];

    maintainers = with lib.maintainers; [ apraga ];

  };

})