Unverified Commit d9559b9a authored by Fernando Rodrigues's avatar Fernando Rodrigues Committed by GitHub
Browse files

blast: 2.14.1 -> 2.17.0 (#484505)

parents 46c4feda 7d6605f8

pkgs/by-name/bl/blast/package.nix

+9 −2
Original line number Diff line number Diff line
@@ -9,15 +9,17 @@ 
  cpio,

  gawk,

  coreutils,

  curl,

  sqlite,

}:



stdenv.mkDerivation (finalAttrs: {

  pname = "blast";

  version = "2.14.1";

  version = "2.17.0";



  src = fetchurl {

    url = "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/${finalAttrs.version}/ncbi-blast-${finalAttrs.version}+-src.tar.gz";

    sha256 = "sha256-cSwtvfD7E8wcLU9O9d0c5LBsO1fpbf6o8j5umfWxZQ4=";

    sha256 = "sha256-UCBXqI6ZkONOYnWL4h6kdMwK1o1qY6LjeyNyrx5eoUc=";

  };



  sourceRoot = "ncbi-blast-${finalAttrs.version}+-src/c++";
@@ -28,6 +30,7 @@ stdenv.mkDerivation (finalAttrs: { 
    "--with-flat-makefile"

    "--without-makefile-auto-update"

    "--with-dll" # build dynamic libraries (static are default)

    "--with-sqlite3=${sqlite.dev}"

  ];



  makeFlags = [ "all_projects=app/" ];
@@ -100,6 +103,7 @@ stdenv.mkDerivation (finalAttrs: { 
    gawk

    zlib

    bzip2

    sqlite

  ];



  strictDeps = true;
@@ -109,6 +113,9 @@ stdenv.mkDerivation (finalAttrs: { 
  postInstall = ''

    substituteInPlace $out/bin/get_species_taxids.sh \

        --replace-fail "/bin/rm" "${coreutils}/bin/rm"



    substituteInPlace $out/bin/update_blastdb.pl \

        --replace-fail 'qw(/usr/local/bin /usr/bin)' 'qw(${lib.getBin curl}/bin)'

  '';

  patches = [ ./no_slash_bin.patch ];