Loading pkgs/development/python-modules/datalad/default.nix +38 −100 Original line number Diff line number Diff line Loading @@ -41,6 +41,7 @@ pythonOlder, typing-extensions, # tests pytest-retry, pytest-xdist, pytestCheckHook, p7zip, Loading @@ -48,16 +49,16 @@ httpretty, }: buildPythonPackage rec { buildPythonPackage (finalAttrs: { pname = "datalad"; version = "1.2.3"; version = "1.3.0"; pyproject = true; src = fetchFromGitHub { owner = "datalad"; repo = "datalad"; tag = version; hash = "sha256-C3e9k4RDFfDMaimZ/7TtAJNzdlfVrKoTHVl0zKL9EjI="; tag = finalAttrs.version; hash = "sha256-aTpiwcwRJyUF68+OsT+u9j/cibZEDhmL45I1MSY3Q7E="; }; postPatch = '' Loading @@ -76,7 +77,9 @@ buildPythonPackage rec { ]; dependencies = optional-dependencies.core ++ optional-dependencies.downloaders ++ optional-dependencies.publish; finalAttrs.passthru.optional-dependencies.core ++ finalAttrs.passthru.optional-dependencies.downloaders ++ finalAttrs.passthru.optional-dependencies.publish; optional-dependencies = { core = [ Loading Loading @@ -124,113 +127,43 @@ buildPythonPackage rec { preCheck = '' export HOME=$TMPDIR export DATALAD_TESTS_NONETWORK=1 export PATH="$PATH:$out/bin" ''; # tests depend on apps in $PATH which only will get installed after the test disabledTests = [ # No such file or directory: 'datalad' "test_script_shims" "test_cfg_override" "test_completion" "test_nested_pushclone_cycle_allplatforms" "test_create_sub_gh3463" "test_create_sub_dataset_dot_no_path" "test_cfg_passthrough" "test_addurls_stdin_input_command_line" "test_run_datalad_help" "test_status_custom_summary_no_repeats" "test_quoting" disabledTestMarks = [ "flaky" ]; # No such file or directory: 'git-annex-remote-[...]" disabledTests = [ # Tries to run `git` and fails "test_reckless" "test_create" "test_ensure_datalad_remote_maybe_enable" "test_subsuperdataset_save" # "git-annex: unable to use external special remote git-annex-remote-datalad" "test_ria_postclonecfg" "test_ria_postclone_noannex" "test_ria_push" "test_basic_scenario" "test_annex_get_from_subdir" "test_ensure_datalad_remote_init_and_enable_needed" "test_ensure_datalad_remote_maybe_enable[False]" "test_ensure_datalad_remote_maybe_enable[True]" "test_create_simple" "test_create_alias" "test_storage_only" "test_initremote" "test_read_access" "test_ephemeral" "test_initremote_basic_fileurl" "test_initremote_basic_httpurl" "test_remote_layout" "test_version_check" "test_gitannex_local" "test_push_url" "test_url_keys" "test_obtain_permission_root" "test_source_candidate_subdataset" "test_update_fetch_all" "test_add_archive_dirs" "test_add_archive_content" "test_add_archive_content_strip_leading" "test_add_archive_content_zip" "test_add_archive_content_absolute_path" "test_add_archive_use_archive_dir" "test_add_archive_single_file" "test_add_delete" "test_add_archive_leading_dir" "test_add_delete_after_and_drop" "test_add_delete_after_and_drop_subdir" "test_override_existing_under_git" "test_copy_file_datalad_specialremote" "test_download_url_archive" "test_download_url_archive_from_subdir" "test_download_url_archive_trailing_separator" "test_download_url_need_datalad_remote" "test_datalad_credential_helper - assert False" # Tries to spawn a subshell and fails "test_shell_completion_source" # need internet access "test_clone_crcns" "test_clone_datasets_root" "test_reckless" "test_autoenabled_remote_msg" "test_ria_http_storedataladorg" "test_gin_cloning" "test_nonuniform_adjusted_subdataset" "test_install_datasets_root" "test_install_simple_local" "test_install_dataset_from_just_source" "test_install_dataset_from_just_source_via_path" "test_datasets_datalad_org" "test_get_cached_dataset" "test_cached_dataset" "test_cached_url" "test_anonymous_s3" "test_protocols" "test_get_versioned_url_anon" "test_install_recursive_github" "test_failed_install_multiple" # Times out "test_rerun_unrelated_nonrun_left_run_right" # Top five slowest (2/3 of total runtime) "test_files_split" "test_gitannex_local" "test_save_hierarchy" "test_recurse_existing" "test_source_candidate_subdataset" ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ # pbcopy not found "test_wtf" # CommandError: 'git -c diff.ignoreSubmodules=none -c core.quotepath=false ls-files -z -m -d' failed with exitcode 128 "test_subsuperdataset_save" ] ++ lib.optionals (pythonAtLeast "3.14") [ # For all: https://github.com/datalad/datalad/issues/7781 # AssertionError: `assert 1 == 0` (refcount error) "test_GitRepo_flyweight" "test_Dataset_flyweight" "test_AnnexRepo_flyweight" # TypeError: cannot pickle '_thread.lock' object "test_popen_invocation" # datalad.runner.exception.CommandError: '/python3.14 -i -u -q -']' timed out after 0.5 seconds "test_asyncio_loop_noninterference1" # hangs "test_keyring" ]; nativeCheckInputs = [ p7zip pytest-retry pytest-xdist pytestCheckHook git-annex Loading @@ -243,15 +176,20 @@ buildPythonPackage rec { "-Wignore::DeprecationWarning" ]; # Tests use ports on localhost __darwinAllowLocalNetworking = true; pythonImportsCheck = [ "datalad" ]; meta = { description = "Keep code, data, containers under control with git and git-annex"; homepage = "https://www.datalad.org"; changelog = "https://github.com/datalad/datalad/blob/${finalAttrs.src.tag}/CHANGELOG.md"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ renesat malik sarahec ]; }; } }) Loading
pkgs/development/python-modules/datalad/default.nix +38 −100 Original line number Diff line number Diff line Loading @@ -41,6 +41,7 @@ pythonOlder, typing-extensions, # tests pytest-retry, pytest-xdist, pytestCheckHook, p7zip, Loading @@ -48,16 +49,16 @@ httpretty, }: buildPythonPackage rec { buildPythonPackage (finalAttrs: { pname = "datalad"; version = "1.2.3"; version = "1.3.0"; pyproject = true; src = fetchFromGitHub { owner = "datalad"; repo = "datalad"; tag = version; hash = "sha256-C3e9k4RDFfDMaimZ/7TtAJNzdlfVrKoTHVl0zKL9EjI="; tag = finalAttrs.version; hash = "sha256-aTpiwcwRJyUF68+OsT+u9j/cibZEDhmL45I1MSY3Q7E="; }; postPatch = '' Loading @@ -76,7 +77,9 @@ buildPythonPackage rec { ]; dependencies = optional-dependencies.core ++ optional-dependencies.downloaders ++ optional-dependencies.publish; finalAttrs.passthru.optional-dependencies.core ++ finalAttrs.passthru.optional-dependencies.downloaders ++ finalAttrs.passthru.optional-dependencies.publish; optional-dependencies = { core = [ Loading Loading @@ -124,113 +127,43 @@ buildPythonPackage rec { preCheck = '' export HOME=$TMPDIR export DATALAD_TESTS_NONETWORK=1 export PATH="$PATH:$out/bin" ''; # tests depend on apps in $PATH which only will get installed after the test disabledTests = [ # No such file or directory: 'datalad' "test_script_shims" "test_cfg_override" "test_completion" "test_nested_pushclone_cycle_allplatforms" "test_create_sub_gh3463" "test_create_sub_dataset_dot_no_path" "test_cfg_passthrough" "test_addurls_stdin_input_command_line" "test_run_datalad_help" "test_status_custom_summary_no_repeats" "test_quoting" disabledTestMarks = [ "flaky" ]; # No such file or directory: 'git-annex-remote-[...]" disabledTests = [ # Tries to run `git` and fails "test_reckless" "test_create" "test_ensure_datalad_remote_maybe_enable" "test_subsuperdataset_save" # "git-annex: unable to use external special remote git-annex-remote-datalad" "test_ria_postclonecfg" "test_ria_postclone_noannex" "test_ria_push" "test_basic_scenario" "test_annex_get_from_subdir" "test_ensure_datalad_remote_init_and_enable_needed" "test_ensure_datalad_remote_maybe_enable[False]" "test_ensure_datalad_remote_maybe_enable[True]" "test_create_simple" "test_create_alias" "test_storage_only" "test_initremote" "test_read_access" "test_ephemeral" "test_initremote_basic_fileurl" "test_initremote_basic_httpurl" "test_remote_layout" "test_version_check" "test_gitannex_local" "test_push_url" "test_url_keys" "test_obtain_permission_root" "test_source_candidate_subdataset" "test_update_fetch_all" "test_add_archive_dirs" "test_add_archive_content" "test_add_archive_content_strip_leading" "test_add_archive_content_zip" "test_add_archive_content_absolute_path" "test_add_archive_use_archive_dir" "test_add_archive_single_file" "test_add_delete" "test_add_archive_leading_dir" "test_add_delete_after_and_drop" "test_add_delete_after_and_drop_subdir" "test_override_existing_under_git" "test_copy_file_datalad_specialremote" "test_download_url_archive" "test_download_url_archive_from_subdir" "test_download_url_archive_trailing_separator" "test_download_url_need_datalad_remote" "test_datalad_credential_helper - assert False" # Tries to spawn a subshell and fails "test_shell_completion_source" # need internet access "test_clone_crcns" "test_clone_datasets_root" "test_reckless" "test_autoenabled_remote_msg" "test_ria_http_storedataladorg" "test_gin_cloning" "test_nonuniform_adjusted_subdataset" "test_install_datasets_root" "test_install_simple_local" "test_install_dataset_from_just_source" "test_install_dataset_from_just_source_via_path" "test_datasets_datalad_org" "test_get_cached_dataset" "test_cached_dataset" "test_cached_url" "test_anonymous_s3" "test_protocols" "test_get_versioned_url_anon" "test_install_recursive_github" "test_failed_install_multiple" # Times out "test_rerun_unrelated_nonrun_left_run_right" # Top five slowest (2/3 of total runtime) "test_files_split" "test_gitannex_local" "test_save_hierarchy" "test_recurse_existing" "test_source_candidate_subdataset" ] ++ lib.optionals stdenv.hostPlatform.isDarwin [ # pbcopy not found "test_wtf" # CommandError: 'git -c diff.ignoreSubmodules=none -c core.quotepath=false ls-files -z -m -d' failed with exitcode 128 "test_subsuperdataset_save" ] ++ lib.optionals (pythonAtLeast "3.14") [ # For all: https://github.com/datalad/datalad/issues/7781 # AssertionError: `assert 1 == 0` (refcount error) "test_GitRepo_flyweight" "test_Dataset_flyweight" "test_AnnexRepo_flyweight" # TypeError: cannot pickle '_thread.lock' object "test_popen_invocation" # datalad.runner.exception.CommandError: '/python3.14 -i -u -q -']' timed out after 0.5 seconds "test_asyncio_loop_noninterference1" # hangs "test_keyring" ]; nativeCheckInputs = [ p7zip pytest-retry pytest-xdist pytestCheckHook git-annex Loading @@ -243,15 +176,20 @@ buildPythonPackage rec { "-Wignore::DeprecationWarning" ]; # Tests use ports on localhost __darwinAllowLocalNetworking = true; pythonImportsCheck = [ "datalad" ]; meta = { description = "Keep code, data, containers under control with git and git-annex"; homepage = "https://www.datalad.org"; changelog = "https://github.com/datalad/datalad/blob/${finalAttrs.src.tag}/CHANGELOG.md"; license = lib.licenses.mit; maintainers = with lib.maintainers; [ renesat malik sarahec ]; }; } })
