Unverified Commit ce0af187 authored by natsukium's avatar natsukium
Browse files

mafft: enable simple test

parent 4b3081c5
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+20 −0
Original line number Diff line number Diff line
@@ -2,6 +2,8 @@
  lib,
  stdenv,
  fetchFromGitLab,
  runCommand,
  mafft,
}:

stdenv.mkDerivation (finalAttrs: {
@@ -25,6 +27,24 @@ stdenv.mkDerivation (finalAttrs: {
    "PREFIX=$(out)"
  ];

  passthru.tests = {
    simple = runCommand "${finalAttrs.pname}-test" { } ''
      mkdir $out
      cd ${finalAttrs.src}/test
      ${lib.getExe mafft} sample > $out/test.fftns2
      ${lib.getExe mafft} --maxiterate 100  sample > $out/test.fftnsi
      ${lib.getExe mafft} --globalpair sample > $out/test.gins1
      ${lib.getExe mafft} --globalpair --maxiterate 100  sample > $out/test.ginsi
      ${lib.getExe mafft} --localpair sample > $out/test.lins1
      ${lib.getExe mafft} --localpair --maxiterate 100  sample > $out/test.linsi
      diff $out/test.fftns2 sample.fftns2
      diff $out/test.fftnsi sample.fftnsi
      diff $out/test.gins1 sample.gins1
      diff $out/test.ginsi sample.ginsi
      diff $out/test.lins1 sample.lins1
    '';
  };

  meta = with lib; {
    description = "Multiple alignment program for amino acid or nucleotide sequences";
    homepage = "https://mafft.cbrc.jp/alignment/software/";