Unverified Commit cd54cfb6 authored by kirillrdy's avatar kirillrdy Committed by GitHub
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Merge pull request #287985 from trofi/svaba-gcc-13-fix 

svaba: fix `gcc-13` build failure
parents 5df6af84 a59d5e30

pkgs/applications/science/biology/svaba/default.nix

+7 −0
Original line number Diff line number Diff line
@@ -14,6 +14,13 @@ stdenv.mkDerivation rec { 


  buildInputs = [ zlib bzip2 xz ];



  postPatch = ''

    # Fix gcc-13 build failure due to missing includes

    sed -e '1i #include <cstdint>' -i \

      SeqLib/src/non_api/Histogram.h \

      src/svaba/Histogram.h

  '';



  # Workaround build failure on -fno-common toolchains like upstream

  # gcc-10. Otherwise build fails as:

  #   ld: ./libfml.a(rle.o):/build/source/SeqLib/fermi-lite/rle.h:33: multiple definition of