Unverified Commit cc6bdf03 authored by OTABI Tomoya's avatar OTABI Tomoya Committed by GitHub
Browse files

Merge pull request #330740 from pyrox0/denose/biopandas 

python312Packages.biopandas: Remove nose dependency
parents 9f10e677 58db6204

pkgs/development/python-modules/biopandas/default.nix

+18 −6
Original line number Diff line number Diff line
@@ -5,11 +5,10 @@ 
  setuptools,

  looseversion,

  mmtf-python,

  nose,

  numpy,

  pandas,

  pytestCheckHook,

  pythonOlder,

  fetchpatch2,

}:



buildPythonPackage rec {
@@ -24,6 +23,22 @@ buildPythonPackage rec { 
    hash = "sha256-1c78baBBsDyvAWrNx5mZI/Q75wyXv0DAwAdWm3EwX/I=";

  };



  patches = [

    # Needed for below patch to apply properly

    (fetchpatch2 {

      name = "deprecate-mmtf-parsing.patch";

      url = "https://github.com/BioPandas/biopandas/commit/7a1517dbe76f2c70da8edb35f90c9fa69254e726.patch?full_index=1";

      hash = "sha256-RFtXFqUYl8GnZ319HsBwx5SUbfUDnR66Ppakdvtg/wI=";

    })

    # Remove nose as a dependency.

    (fetchpatch2 {

      name = "remove-nose.patch";

      url = "https://github.com/BioPandas/biopandas/commit/67aa2f237c70c826cd9ab59d6ae114582da2112f.patch?full_index=1";

      hash = "sha256-fVl57/vGuzlYX/MBZnma1ZFCVmIpjr1k8t3bUJnb/uI=";

      excludes = [ "setup.py" ];

    })

  ];



  pythonRelaxDeps = [ "looseversion" ];



  build-system = [ setuptools ];
@@ -35,10 +50,7 @@ buildPythonPackage rec { 
    looseversion

  ];



  nativeCheckInputs = [

    nose

    pytestCheckHook

  ];

  nativeCheckInputs = [ pytestCheckHook ];



  disabledTests = [

    # require network access