python3Packages.linear-operator: 0.6 -> 0.6.1 (#510416) (c83d340d) · Commits · nix / nixpkgs

pkgs/development/python-modules/ax-platform/default.nix

+4 −4

Original line number	Diff line number	Diff line
		@@ -30,14 +30,14 @@

		buildPythonPackage (finalAttrs: {
		pname = "ax-platform";
		version = "1.2.3";
		version = "1.2.4";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "facebook";
		repo = "ax";
		tag = finalAttrs.version;
		hash = "sha256-zIK3D7QSkfzAxySumdxsA3tiPWYbP9E6SS21837H4ZY=";
		hash = "sha256-ZeYoLOPF2D1bk89V5/WO/v0UCtDisbAOOL/Su9sB2Fg=";
		};

		env.ALLOW_BOTORCH_LATEST = "1";
		@@ -120,8 +120,8 @@ buildPythonPackage (finalAttrs: {
		# broken with sqlalchemy 2
		"test_sql_storage"
		]
		++ lib.optionals stdenv.hostPlatform.isDarwin [
		# flaky on x86
		++ lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isx86_64) [
		# flaky
		"test_gen_with_expanded_parameter_space"
		];

+12 −3

Original line number	Diff line number	Diff line
		@@ -29,14 +29,14 @@

		buildPythonPackage (finalAttrs: {
		pname = "botorch";
		version = "0.17.0";
		version = "0.17.2";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "meta-pytorch";
		repo = "botorch";
		tag = "v${finalAttrs.version}";
		hash = "sha256-NDdXsmVdrTEXMXXVf89EkGXVOYnEcXwtzarB5niTNaw=";
		hash = "sha256-KWkRdgOAhWoVRoBn0XvKhTQX3KPHJrzqWoiaKrYzi7o=";
		};

		build-system = [
		@@ -82,10 +82,19 @@ buildPythonPackage (finalAttrs: {
		# RuntimeError: Boolean value of Tensor with more than one value is ambiguous
		"test_optimize_acqf_mixed_binary_only"
		]
		++ lib.optionals (stdenv.buildPlatform.system == "x86_64-linux") [
		++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86_64) [
		# stuck tests on hydra
		"test_moo_predictive_entropy_search"
		]
		++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
		# RuntimeError: Failed to initialize cpuinfo!
		"test_append_features"
		"test_delattr_ctx"
		"test_input_perturbation"
		"test_module_rollback_ctx"
		"test_parameter_rollback_ctx"
		"test_zero_grad_ctx"
		]
		++ lib.optionals (stdenv.hostPlatform.isDarwin) [
		# RuntimeError: required keyword attribute 'value' has the wrong type
		"test_posterior_in_trace_mode"

+7 −12

Original line number	Diff line number	Diff line
		@@ -9,7 +9,6 @@
		setuptools-scm,

		# dependencies
		jaxtyping,
		linear-operator,
		mpmath,
		scikit-learn,
		@@ -22,31 +21,22 @@

		buildPythonPackage (finalAttrs: {
		pname = "gpytorch";
		version = "1.15.1";
		version = "1.15.2";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "cornellius-gp";
		repo = "gpytorch";
		tag = "v${finalAttrs.version}";
		hash = "sha256-ftiAY02K0EwVQZufk8xR+/21A+2ONWchuWPF3a5lRW0=";
		hash = "sha256-1CavS+qrV8YqnsT87GjmJV2LOtvExFYQE5YpYZEw9ts=";
		};

		# AttributeError: module 'numpy' has no attribute 'trapz'
		postPatch = ''
		substituteInPlace gpytorch/kernels/spectral_mixture_kernel.py \
		--replace-fail \
		"np.trapz(emp_spect, freq)" \
		"np.trapezoid(emp_spect, freq)"
		'';

		build-system = [
		setuptools
		setuptools-scm
		];

		dependencies = [
		jaxtyping
		linear-operator
		mpmath
		scikit-learn
		@@ -67,6 +57,11 @@ buildPythonPackage (finalAttrs: {
		"test_optimization_optimal_error"
		# https://github.com/cornellius-gp/gpytorch/issues/2396
		"test_t_matmul_matrix"
		]
		++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
		# RuntimeError: Failed to initialize cpuinfo!
		"test_dtype_value_context"
		"test_half"
		];

		disabledTestPaths = lib.optionals (stdenv.hostPlatform.isDarwin && stdenv.hostPlatform.isx86_64) [

+20 −17

Original line number	Diff line number	Diff line
		{
		lib,
		stdenv,
		buildPythonPackage,
		fetchFromGitHub,
		jaxtyping,
		pytestCheckHook,
		scipy,

		# build-system
		setuptools,
		setuptools-scm,

		# dependencies
		scipy,
		torch,
		typeguard,

		# tests
		pytestCheckHook,
		}:

		buildPythonPackage rec {
		buildPythonPackage (finalAttrs: {
		pname = "linear-operator";
		version = "0.6";
		version = "0.6.1";
		pyproject = true;

		src = fetchFromGitHub {
		owner = "cornellius-gp";
		repo = "linear_operator";
		tag = "v${version}";
		hash = "sha256-qBC7wrpcZ8ViFqIOSd2F8heeBRQxrac/l33srHhNaIM=";
		tag = "v${finalAttrs.version}";
		hash = "sha256-Ghe4a3zMSvTv3J6ROd1RLELK+k24/rO8p+XUPVsl090=";
		};

		build-system = [
		@@ -29,15 +34,8 @@ buildPythonPackage rec {
		];

		dependencies = [
		jaxtyping
		scipy
		torch
		typeguard
		];

		pythonRelaxDeps = [
		"jaxtyping"
		"typeguard"
		];

		pythonImportsCheck = [ "linear_operator" ];
		@@ -49,12 +47,17 @@ buildPythonPackage rec {
		"test_matmul_matrix_broadcast"
		"test_solve_matrix_broadcast"
		"test_svd"
		]
		++ lib.optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isAarch64) [
		# RuntimeError: Failed to initialize cpuinfo!
		"test_half"
		];

		meta = {
		description = "LinearOperator implementation to wrap the numerical nuts and bolts of GPyTorch";
		homepage = "https://github.com/cornellius-gp/linear_operator/";
		homepage = "https://github.com/cornellius-gp/linear_operator";
		changelog = "https://github.com/cornellius-gp/linear_operator/releases/tag/${finalAttrs.src.tag}";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ veprbl ];
		};
		}
		})