Unverified Commit c3e57afe authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

Merge pull request #192695 from bcdarwin/edlib-init 

python310Packages.edlib: init at 1.3.9
parents dc3d9427 cbb3c576

pkgs/development/libraries/science/biology/edlib/default.nix

0 → 100644
+30 −0
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{ lib, stdenv, fetchFromGitHub, cmake }:



stdenv.mkDerivation rec {

  pname = "edlib";

  version = "unstable-2021-08-20";



  src = fetchFromGitHub {

    owner = "Martinsos";

    repo = pname;

    rev = "f8afceb49ab0095c852e0b8b488ae2c88e566afd";

    hash = "sha256-P/tFbvPBtA0MYCNDabW+Ypo3ltwP4S+6lRDxwAZ1JFo=";

  };



  nativeBuildInputs = [ cmake ];



  doCheck = true;

  checkPhase = ''

    runHook preCheck

    bin/runTests

    runHook postCheck

  '';



  meta = with lib; {

    homepage = "https://martinsos.github.io/edlib";

    description = "Lightweight, fast C/C++ library for sequence alignment using edit distance";

    maintainers = with maintainers; [ bcdarwin ];

    license = licenses.mit;

    platforms = platforms.unix;

  };

}

pkgs/development/python-modules/edlib/default.nix

0 → 100644
+36 −0
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{ lib

, buildPythonPackage

, pythonOlder

, fetchFromGitHub

, edlib

, cython

, python

}:



buildPythonPackage {

  inherit (edlib) pname src meta;

  version = "1.3.9";



  disabled = pythonOlder "3.6";



  sourceRoot = "source/bindings/python";



  preBuild = ''

    ln -s ${edlib.src}/edlib .

  '';



  EDLIB_OMIT_README_RST = 1;

  EDLIB_USE_CYTHON = 1;



  nativeBuildInputs = [ cython ];

  buildInputs = [ edlib ];



  checkPhase = ''

    runHook preCheck

    ${python.interpreter} test.py

    runHook postCheck

  '';



  pythonImportsCheck = [ "edlib" ];



}

pkgs/top-level/all-packages.nix

+2 −0
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@@ -6675,6 +6675,8 @@ with pkgs; 














  edk2-uefi-shell = callPackage ../tools/misc/edk2-uefi-shell { };



























  edlib = callPackage ../development/libraries/science/biology/edlib { };



























  eff = callPackage ../development/interpreters/eff { };





























  eflite = callPackage ../applications/audio/eflite {};

























pkgs/top-level/python-packages.nix



+4
−0






























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@@ -2937,6 +2937,10 @@ self: super: with self; {





























  editorconfig = callPackage ../development/python-modules/editorconfig { };





























  edlib = callPackage ../development/python-modules/edlib {













    inherit (pkgs) edlib;













  };





























  edward = callPackage ../development/python-modules/edward { };































  effect = callPackage ../development/python-modules/effect { };