Commit c23d2709 authored by Ben Darwin's avatar Ben Darwin
Browse files

python310Packages.intensity-normalization: unbreak 

Added missing dependencies and fixed test collection.
parent b5a6d5bf

pkgs/development/python-modules/intensity-normalization/default.nix

+17 −7
Original line number Diff line number Diff line
@@ -3,13 +3,17 @@ 
, fetchPypi

, pythonOlder

, pytestCheckHook

, pythonRelaxDepsHook

, matplotlib

, nibabel

, numpy

, pydicom

, pymedio

, scikit-fuzzy

, scikitimage

, scikit-learn

, scipy

, simpleitk

, statsmodels

}:
@@ -26,25 +30,32 @@ buildPythonPackage rec { 
    hash = "sha256-Yjd4hXmbT87xNKSqc6zkKNisOVhQzQAUZI5wBiI/UBk=";

  };



  postPatch = ''

    substituteInPlace setup.cfg --replace "!=3.10.*," "" --replace "!=3.11.*" ""

    substituteInPlace setup.cfg --replace "pytest-runner" ""

  '';



  nativeBuildInputs = [ pythonRelaxDepsHook ];

  pythonRelaxDeps = [ "nibabel" ];



  propagatedBuildInputs = [

    matplotlib

    nibabel

    numpy

    pydicom

    pymedio

    scikit-fuzzy

    scikitimage

    scikit-learn

    scipy

    simpleitk

    statsmodels

  ];



  nativeCheckInputs = [

    pytestCheckHook

  ];



  postPatch = ''

    substituteInPlace setup.cfg \

      --replace "pytest-runner" ""

  '';

  pytestFlagsArray = [ "tests" ];



  pythonImportsCheck = [

    "intensity_normalization"
@@ -53,12 +64,11 @@ buildPythonPackage rec { 
    "intensity_normalization.util"

  ];





  meta = with lib; {

    homepage = "https://github.com/jcreinhold/intensity-normalization";

    description = "MRI intensity normalization tools";

    maintainers = with maintainers; [ bcdarwin ];

    license = licenses.asl20;

    # depends on simpleitk python wrapper which is not packaged yet

    broken = true;

  };

}