Commit bf210e08 authored by kyehn's avatar kyehn
Browse files

kent: use finalAttrs and tag and writableTmpDirAsHomeHook

parent 27070759

pkgs/by-name/ke/kent/package.nix

+9 −7
Original line number Diff line number Diff line 
{

  lib,

  stdenv,

  writableTmpDirAsHomeHook,

  libpng,

  libuuid,

  zlib,
@@ -16,17 +17,19 @@ 
  jq,

  nix-update,

}:

stdenv.mkDerivation rec {

stdenv.mkDerivation (finalAttrs: {

  pname = "kent";

  version = "486";



  src = fetchFromGitHub {

    owner = "ucscGenomeBrowser";

    repo = "kent";

    rev = "v${version}_base";

    tag = "v${finalAttrs.version}_base";

    hash = "sha256-NffQ04+5rMtG/VI7YFK4Ff39DDhdh9Wlc0i1iVbg8Js=";

  };



  nativeBuildInputs = [ writableTmpDirAsHomeHook ];



  buildInputs = [

    libpng

    libuuid
@@ -40,10 +43,10 @@ stdenv.mkDerivation rec { 


  postPatch = ''

    substituteInPlace ./src/checkUmask.sh \

      --replace "/bin/bash" "${bash}/bin/bash"

      --replace-fail "/bin/bash" "${bash}/bin/bash"



    substituteInPlace ./src/hg/sqlEnvTest.sh \

      --replace "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config"

      --replace-fail "which mysql_config" "${which}/bin/which ${libmysqlclient}/bin/mysql_config"

  '';



  buildPhase = ''
@@ -53,7 +56,6 @@ stdenv.mkDerivation rec { 
    export CFLAGS="-fPIC"

    export MYSQLINC=$(mysql_config --include | sed -e 's/^-I//g')

    export MYSQLLIBS=$(mysql_config --libs)

    export HOME=$TMPDIR

    export DESTBINDIR=$HOME/bin



    mkdir -p $HOME/lib $HOME/bin/${stdenv.hostPlatform.parsed.cpu.name}
@@ -96,9 +98,9 @@ stdenv.mkDerivation rec { 
  meta = {

    description = "UCSC Genome Bioinformatics Group's suite of biological analysis tools, i.e. the kent utilities";

    homepage = "http://genome.ucsc.edu";

    changelog = "https://github.com/ucscGenomeBrowser/kent/releases/tag/v${version}_base";

    changelog = "https://github.com/ucscGenomeBrowser/kent/releases/tag/v${finalAttrs.version}_base";

    license = lib.licenses.unfree;

    maintainers = with lib.maintainers; [ scalavision ];

    platforms = lib.platforms.linux;

  };

}
 
})