Unverified Commit bcb86e4c authored by Gaétan Lepage's avatar Gaétan Lepage Committed by GitHub
Browse files

splitcode: add update script; 0.30.0 -> 0.31.2 (#370167)

parents d43b3890 653c1f69

pkgs/by-name/sp/splitcode/add-stdint.patch

deleted100644 → 0
+0 −12
Original line number Diff line number Diff line 
diff --git a/src/SplitCode.h b/src/SplitCode.h

index 45c199c..fb05250 100644

--- a/src/SplitCode.h

+++ b/src/SplitCode.h

@@ -18,6 +18,7 @@

 #include <stack>

 #include <cmath>

 #include <iomanip>

+#include <cstdint>

 

 #if defined(_MSVC_LANG)

 #define SPLITCODE_CPP_VERSION _MSVC_LANG

pkgs/by-name/sp/splitcode/package.nix

+10 −5
Original line number Diff line number Diff line
@@ -5,9 +5,10 @@ 
  cmake,

  libcxx,

  zlib,

  nix-update-script,

}:

let

  version = "0.30.0";

  version = "0.31.2";

in

stdenv.mkDerivation {

  pname = "splitcode";
@@ -16,12 +17,10 @@ stdenv.mkDerivation { 
  src = fetchFromGitHub {

    owner = "pachterlab";

    repo = "splitcode";

    rev = "v${version}";

    hash = "sha256-g38pJFP9uA2P5ktogAPXKgPtsEJn5vtnK5HClqqezmg=";

    tag = "v${version}";

    hash = "sha256-fIx8EXdhkIkWmb86HKlUPSgsKvbGcrKsuNMWo8kU+Aw=";

  };



  patches = [ ./add-stdint.patch ];



  nativeBuildInputs = [ cmake ];



  buildInputs = [
@@ -36,6 +35,8 @@ stdenv.mkDerivation { 
    bash ./func_tests/runtests.sh

  '';



  passthru.updateScript = nix-update-script { };



  meta = {

    description = "Tool for flexible, efficient parsing, interpreting, and editing of technical sequences in sequencing reads";

    homepage = "https://github.com/pachterlab/splitcode";
@@ -43,5 +44,9 @@ stdenv.mkDerivation { 
    platforms = lib.platforms.all;

    maintainers = with lib.maintainers; [ zimward ];

    mainProgram = "splitcode";

    badPlatforms = [

      # Test hangs indefinitely. See https://github.com/pachterlab/splitcode/issues/31

      "aarch64-linux"

    ];

  };

}