Commit bca3dcb3 authored by Gaetan Lepage's avatar Gaetan Lepage
Browse files

python3Packages.nibabel: cleanup, fix

parent 7a6e1c1b

pkgs/development/python-modules/nibabel/default.nix

+17 −12
Original line number Diff line number Diff line
@@ -5,17 +5,25 @@ 
  fetchpatch2,

  pythonAtLeast,

  pythonOlder,

  hatchling,



  # build-system

  hatch-vcs,

  hatchling,



  # dependencies

  numpy,

  packaging,

  importlib-resources,

  typing-extensions,



  # optional-dependencies

  pydicom,

  pillow,

  h5py,

  scipy,

  git,



  addBinToPathHook,

  gitMinimal,

  pytest-doctestplus,

  pytest-httpserver,

  pytest-xdist,
@@ -42,8 +50,8 @@ buildPythonPackage (finalAttrs: { 
  ];



  build-system = [

    hatchling

    hatch-vcs

    hatchling

  ];



  dependencies = [
@@ -53,19 +61,20 @@ buildPythonPackage (finalAttrs: { 
  ++ lib.optionals (pythonOlder "3.12") [ importlib-resources ]

  ++ lib.optionals (pythonOlder "3.13") [ typing-extensions ];



  optional-dependencies = rec {

    all = dicom ++ dicomfs ++ minc2 ++ spm ++ zstd;

  optional-dependencies = lib.fix (self: {

    all = self.dicom ++ self.dicomfs ++ self.minc2 ++ self.spm ++ self.zstd;

    dicom = [ pydicom ];

    dicomfs = [ pillow ] ++ dicom;

    dicomfs = [ pillow ] ++ self.dicom;

    minc2 = [ h5py ];

    spm = [ scipy ];

    zstd = [

      # TODO: pyzstd

    ];

  };

  });



  nativeCheckInputs = [

    git

    addBinToPathHook

    gitMinimal

    pytest-doctestplus

    pytest-httpserver

    pytest-xdist
@@ -78,10 +87,6 @@ buildPythonPackage (finalAttrs: { 
    "test_deprecator_maker"

  ];



  preCheck = ''

    export PATH=$out/bin:$PATH

  '';



  meta = {

    homepage = "https://nipy.org/nibabel";

    changelog = "https://github.com/nipy/nibabel/blob/${finalAttrs.version}/Changelog";