Commit b8ec97a7 authored by Phillip Seeber's avatar Phillip Seeber
Browse files

python3Packages.biopython: fix numpy >= 2.4 compatibility

parent b4a1d471

pkgs/development/python-modules/biopython/default.nix

+9 −2
Original line number Diff line number Diff line
@@ -2,6 +2,7 @@ 
  lib,

  buildPythonPackage,

  fetchPypi,

  fetchpatch,

  setuptools,

  numpy,

}:
@@ -16,6 +17,14 @@ buildPythonPackage rec { 
    hash = "sha256-k6ULWGpNLOxoqy+Z0D71g8V2HY+6VTXLjoHaeB0Nkv8=";

  };



  patches = [

    # Numpy 2.4 compatibility

    (fetchpatch {

      url = "https://github.com/biopython/biopython/pull/5161.patch";

      hash = "sha256-oN0nNlhvshIgNrmm+tIeCAJx1U/OqhdL4tj51DV2CHU=";

    })

  ];



  build-system = [ setuptools ];



  dependencies = [ numpy ];
@@ -33,8 +42,6 @@ buildPythonPackage rec { 
  '';



  meta = {

    # https://github.com/biopython/biopython/issues/5135

    broken = lib.versionAtLeast numpy.version "2.4";

    description = "Python library for bioinformatics";

    longDescription = ''

      Biopython is a set of freely available tools for biological computation