Unverified Commit ab78a72c authored by Sandro Jäckel's avatar Sandro Jäckel Committed by GitHub
Browse files

Merge pull request #198872 from jiegec/nest 

nest: init at 3.3
parents b8997651 fc2812a1

pkgs/applications/science/biology/nest/default.nix

0 → 100644
+70 −0
Original line number Diff line number Diff line 
{ lib

, stdenv

, fetchFromGitHub

, testers

, cmake

, gsl

, libtool

, mpi

, nest

, pkg-config

, python3

, readline

, autoPatchelfHook

, withPython ? false

, withMpi ? false

}:



stdenv.mkDerivation rec {

  pname = "nest";

  version = "3.3";



  src = fetchFromGitHub {

    owner = "nest";

    repo = "nest-simulator";

    rev = "v${version}";

    sha256 = "sha256-wmn5LOOHlSuyPdV6O6v7j10dxdcvqpym6MfveZdL+dU=";

  };



  postPatch = ''

    patchShebangs cmake/CheckFiles/check_return_val.sh

    # fix PyNEST installation path

    # it expects CMAKE_INSTALL_LIBDIR to be relative

    substituteInPlace cmake/ProcessOptions.cmake \

      --replace "\''${CMAKE_INSTALL_LIBDIR}/python" "lib/python"

  '';



  nativeBuildInputs = [

    cmake

    pkg-config

    autoPatchelfHook

  ];



  buildInputs = [

    gsl

    readline

    libtool # libltdl

  ] ++ lib.optionals withPython [

    python3

    python3.pkgs.cython

  ] ++ lib.optional withMpi mpi;



  cmakeFlags = [

    "-Dwith-python=${if withPython then "ON" else "OFF"}"

    "-Dwith-mpi=${if withMpi then "ON" else "OFF"}"

    "-Dwith-openmp=${if stdenv.isDarwin then "OFF" else "ON"}"

  ];



  passthru.tests.version = testers.testVersion {

    package = nest;

    command = "nest --version";

  };



  meta = with lib; {

    description = "NEST is a command line tool for simulating neural networks";

    homepage = "https://www.nest-simulator.org/";

    license = licenses.gpl2;

    maintainers = with maintainers; [ jiegec ];

    platforms = platforms.unix;

  };

}

pkgs/top-level/all-packages.nix

+4 −0
Original line number Diff line number Diff line
@@ -36343,6 +36343,10 @@ with pkgs; 














  n3 = callPackage ../applications/science/biology/N3 { };



























  nest = callPackage ../applications/science/biology/nest { };

























  nest-mpi = callPackage ../applications/science/biology/nest { withMpi = true; };



























  neuron = callPackage ../applications/science/biology/neuron { python = null; };





























  neuron-mpi = neuron.override {useMpi = true; };

























pkgs/top-level/python-packages.nix



+2
−0






























Original line number
Diff line number
Diff line








@@ -6302,6 +6302,8 @@ self: super: with self; {





























  nessclient = callPackage ../development/python-modules/nessclient { };





























  nest = toPythonModule(pkgs.nest-mpi.override { withPython = true; python3 = python; });





























  nest-asyncio = callPackage ../development/python-modules/nest-asyncio { };































  nested-lookup = callPackage ../development/python-modules/nested-lookup { };