bio-gappa: init at 0.8.4 (#295944)

{

  lib,

  stdenv,

  fetchFromGitHub,

  cmake,

  autoconf,

  pkg-config,

  libz,

  bzip2,

  xz,

}:

stdenv.mkDerivation (finalAttrs: {

  pname = "bio-gappa";

  version = "0.8.4";

  src = fetchFromGitHub {

    owner = "lczech";

    repo = "gappa";

    rev = "v${finalAttrs.version}";

    hash = "sha256-VAp9e5Cu3tTeWSOTZ8kPG1eOyocYZiJsy/s+MWbCMLI=";

    fetchSubmodules = true;

  };

  nativeBuildInputs = [

    cmake

    pkg-config

    autoconf

  ];

  buildInputs = [

    libz

    bzip2

    xz

  ];

  installPhase = ''

    runHook preInstall

    mkdir -p $out/bin

    install -Dm755 ../bin/gappa $out/bin/gappa

    runHook postInstall

  '';

  meta = with lib; {

    homepage = "https://github.com/lczech/gappa";

    description = "Toolkit for analyzing and visualizing phylogenetic (placement) data";

    longDescription = ''

      gappa is a collection of commands for working with phylogenetic data. Its

      main focus are evolutionary placements of short environmental sequences

      on a reference phylogenetic tree. Such data are typically produced by

      tools such as EPA-ng, RAxML-EPA or pplacer, and usually stored in jplace

      files.

    '';

    platforms = platforms.all;

    license = licenses.gpl3Plus;

    maintainers = with maintainers; [ bzizou ];

    mainProgram = "gappa";

  };

})