python3Packages.mne-python: 1.6.0 -> 1.6.1

{ lib

, buildPythonPackage

, fetchFromGitHub

, setuptools

, setuptools-scm

, numpy

, scipy

, pytestCheckHook

, pytest-timeout

, h5py

, pytest-harvest

, matplotlib

, nibabel

, pandas

, scikit-learn

, decorator

, jinja2

, pooch

, tqdm

, setuptools

, packaging

, importlib-resources

, lazy-loader

, h5io

, pymatreader

, pythonOlder

}:

buildPythonPackage rec {

  pname = "mne-python";

  version = "1.6.0";

  format = "setuptools";

  version = "1.6.1";

  pyproject = true;

  disabled = pythonOlder "3.7";

  disabled = pythonOlder "3.8";

  src = fetchFromGitHub {

    owner = "mne-tools";

    repo = pname;

    repo = "mne-python";

    rev = "refs/tags/v${version}";

    hash = "sha256-OoaXNHGL2svOpNL5GHcVRfQc9GxIRpZRhpZ5Hi1JTzM=";

    hash = "sha256-U1aMqcUZ3BcwqwOYh/qfG5PhacwBVioAgNc52uaoJL0";

  };

  postPatch = ''

    substituteInPlace pyproject.toml  \

      --replace "--cov-report=" ""  \

      --replace "--cov-branch" ""

  '';

  nativeBuildInputs = [

    setuptools

    setuptools-scm

  ];

  propagatedBuildInputs = [

    decorator

    jinja2

    matplotlib

    numpy

    pooch

    scipy

    setuptools

    matplotlib

    tqdm

    pooch

    decorator

    packaging

    jinja2

    lazy-loader

  ] ++ lib.optionals (pythonOlder "3.9") [

    importlib-resources

  ];

  passthru.optional-dependencies = {

    hdf5 = [

      h5io

      pymatreader

    ];

  };

  nativeCheckInputs = [

    h5py

    nibabel

    pandas

    pytestCheckHook

    scikit-learn

    pytest-timeout

  ];

    pytest-harvest

  ] ++ lib.flatten (builtins.attrValues passthru.optional-dependencies);

  preCheck = ''

    export HOME=$TMP

    export HOME=$(mktemp -d)

    export MNE_SKIP_TESTING_DATASET_TESTS=true

    export MNE_SKIP_NETWORK_TESTS=1

  '';

  # All tests pass, but Pytest hangs afterwards - probably some thread hasn't terminated

  doCheck = false;

  pythonImportsCheck = [

    "mne"

  ];

  meta = with lib; {

    description = "Magnetoencephelography and electroencephalography in Python";

    homepage = "https://mne.tools";

    changelog = "https://mne.tools/stable/changes/v${version}.html";

    license = licenses.bsd3;

    maintainers = with maintainers; [ bcdarwin ];

  };