Merge pull request #193990 from swflint/add-lifelines (a5826fe6) · Commits · nix / nixpkgs

pkgs/development/python-modules/autograd-gamma/default.nix

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Original line number	Diff line number	Diff line
		{ lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook, autograd, scipy }:

		buildPythonPackage rec {
		pname = "autograd-gamma";
		version = "0.4.3";

		src = fetchFromGitHub {
		owner = "CamDavidsonPilon";
		repo = "autograd-gamma";
		rev = "v${version}";
		sha256 = "0v03gly5k3a1hzb54zpw6409m3riak49qd27hkq2f66ai42ivqz2";
		};

		propagatedBuildInputs = [
		autograd
		scipy
		];

		pythonImportsCheck = [ "autograd_gamma" ];

		checkInputs = [ pytestCheckHook ];

		meta = {
		homepage = "https://github.com/CamDavidsonPilon/autograd-gamma";
		description = "Autograd compatible approximations to the gamma family of functions";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ swflint ];
		};
		}

0 → 100644

+63 −0

Original line number	Diff line number	Diff line
		{ lib
		, buildPythonPackage
		, fetchFromGitHub
		, pytestCheckHook
		, hatchling
		, hatch-vcs
		, git
		, astor
		, interface-meta
		, numpy
		, pandas
		, scipy
		, sympy
		, wrapt
		, typing-extensions
		}:

		buildPythonPackage rec {
		pname = "formulaic";
		version = "0.5.2";

		format = "pyproject";

		src = fetchFromGitHub {
		owner = "matthewwardrop";
		repo = "formulaic";
		rev = "v${version}";
		sha256 = "sha256-sIvHTuUS/nkcDjRgZCoEOY2negIOsarzH0PeXJsavWc=";
		};

		SETUPTOOLS_SCM_PRETEND_VERSION = version;

		nativeBuildInputs = [
		hatchling
		hatch-vcs
		];

		propagatedBuildInputs = [
		astor
		numpy
		pandas
		scipy
		wrapt
		typing-extensions
		interface-meta
		sympy
		];

		pythonImportsCheck = [ "formulaic" ];

		checkInputs = [ pytestCheckHook ];

		disabledTestPaths = [
		"tests/transforms/test_poly.py"
		];

		meta = {
		homepage = "https://matthewwardrop.github.io/formulaic/";
		description = "High-performance implementation of Wilkinson formulas for";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ swflint ];
		};
		}

0 → 100644

+36 −0

Original line number	Diff line number	Diff line
		From 581102ae94a7e6dfd3ad3fa5371068189b9e7c44 Mon Sep 17 00:00:00 2001
		From: "Samuel W. Flint" <swflint@flintfam.org>
		Date: Thu, 27 Oct 2022 12:42:07 -0500
		Subject: [PATCH] fix-versions

		---
		interface_meta/_version.py \| 2 +-
		pyproject.toml \| 2 +-
		2 files changed, 2 insertions(+), 2 deletions(-)

		diff --git a/interface_meta/_version.py b/interface_meta/_version.py
		index 3d50665..b3d3818 100644
		--- a/interface_meta/_version.py
		+++ b/interface_meta/_version.py
		@@ -1,5 +1,5 @@
		__author__ = "Matthew Wardrop"
		__author_email__ = "mpwardrop@gmail.com"
		-__version__ = "0.0.0"
		+__version__ = "1.3.0"

		__dependencies__ = []
		diff --git a/pyproject.toml b/pyproject.toml
		index 43dab27..e543549 100644
		--- a/pyproject.toml
		+++ b/pyproject.toml
		@@ -1,6 +1,6 @@
		[tool.poetry]
		name = "interface_meta"
		-version = "0.0.0"
		+version = "1.3.0"
		description = "`interface_meta` provides a convenient way to expose an extensible API with enforced method signatures and consistent documentation."
		authors = ["Matthew Wardrop <mpwardrop@gmail.com>"]
		license = "MIT"
		--
		2.37.0

0 → 100644

+38 −0

Original line number	Diff line number	Diff line
		{ lib, buildPythonPackage, fetchFromGitHub, pytestCheckHook, poetry-core, poetry-dynamic-versioning }:

		buildPythonPackage rec {
		pname = "interface-meta";
		version = "1.3.0";

		format = "pyproject";

		src = fetchFromGitHub {
		owner = "matthewwardrop";
		repo = "interface_meta";
		rev = "v${version}";
		sha256 = "0rzh11wnab33b11391vc2ynf8ncxn22b12wn46lmgkrc5mqza8hd";
		};

		patches = [
		./0001-fix-version.patch
		];

		nativeBuildInputs = [
		poetry-core
		];

		propogatedBuildInputs = [
		poetry-dynamic-versioning
		];

		pythonImportsCheck = [ "interface_meta" ];

		checkInputs = [ pytestCheckHook ];

		meta = {
		homepage = "https://github.com/matthewwardrop/interface_meta";
		description = "Convenient way to expose an extensible API with enforced method signatures and consistent documentation";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ swflint ];
		};
		}

0 → 100644

+63 −0

Original line number	Diff line number	Diff line
		{ lib
		, buildPythonPackage
		, fetchFromGitHub
		, pytestCheckHook
		, numpy
		, scipy
		, pandas
		, matplotlib
		, autograd
		, autograd-gamma
		, formulaic
		, scikit-learn
		, sybil
		, flaky
		, jinja2
		, dill
		, psutil
		}:

		buildPythonPackage rec {
		pname = "lifelines";
		version = "0.27.4";

		src = fetchFromGitHub {
		owner = "CamDavidsonPilon";
		repo = "lifelines";
		rev = "v${version}";
		sha256 = "sha256-KDoXplqkTsk85dmcTBhbj2GDcC4ry+2z5C2QHAnBTw4=";
		};

		propagatedBuildInputs = [
		numpy
		scipy
		pandas
		matplotlib
		autograd
		autograd-gamma
		formulaic
		];

		pythonImportsCheck = [ "lifelines" ];

		checkInputs = [
		dill
		flaky
		jinja2
		psutil
		pytestCheckHook
		scikit-learn
		sybil
		];

		disabledTestPaths = [
		"lifelines/tests/test_estimation.py"
		];

		meta = {
		homepage = "https://lifelines.readthedocs.io";
		description = "Survival analysis in Python";
		license = lib.licenses.mit;
		maintainers = with lib.maintainers; [ swflint ];
		};
		}