Merge pull request #329983 from bcdarwin/multiscale-spatial-image (a2c2cc0e) · Commits · nix / nixpkgs

pkgs/development/python-modules/multiscale-spatial-image/default.nix

0 → 100644

+81 −0

Original line number	Diff line number	Diff line
		{
		lib,
		buildPythonPackage,
		pythonOlder,
		fetchFromGitHub,
		hatchling,
		dask,
		numpy,
		python-dateutil,
		spatial-image,
		xarray,
		xarray-datatree,
		zarr,
		dask-image,
		fsspec,
		jsonschema,
		nbmake,
		pooch,
		pytestCheckHook,
		pytest-mypy,
		urllib3,
		}:

		buildPythonPackage rec {
		pname = "multiscale-spatial-image";
		version = "1.0.1";
		pyproject = true;

		disabled = pythonOlder "3.8";

		src = fetchFromGitHub {
		owner = "spatial-image";
		repo = "multiscale-spatial-image";
		rev = "refs/tags/v${version}";
		hash = "sha256-s/88N8IVkj+9MZYAtEJSpmmDdjIxf4S6U5gYr86Ikrw=";
		};

		build-system = [ hatchling ];

		dependencies = [
		dask
		numpy
		python-dateutil
		spatial-image
		xarray
		xarray-datatree
		zarr
		];

		optional-dependencies = {
		dask-image = [ dask-image ];
		#itk = [
		# itk-filtering # not in nixpkgs yet
		#];
		test = [
		dask-image
		fsspec
		#ipfsspec # not in nixpkgs
		#itk-filtering # not in nixpkgs
		jsonschema
		nbmake
		pooch
		pytest-mypy
		urllib3
		];
		};

		nativeCheckInputs = [ pytestCheckHook ] ++ optional-dependencies.test;

		doCheck = false; # all test files try to download data

		pythonImportsCheck = [ "multiscale_spatial_image" ];

		meta = {
		description = "Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF";
		homepage = "https://github.com/spatial-image/multiscale-spatial-image";
		changelog = "https://github.com/spatial-image/multiscale-spatial-image/releases/tag/v${version}";
		license = lib.licenses.asl20;
		maintainers = with lib.maintainers; [ bcdarwin ];
		};
		}

0 → 100644

+59 −0

Original line number	Diff line number	Diff line
		{
		lib,
		buildPythonPackage,
		fetchFromGitHub,
		pythonOlder,
		check-manifest,
		setuptools,
		setuptools-scm,
		packaging,
		pytestCheckHook,
		xarray,
		zarr,
		}:

		buildPythonPackage rec {
		pname = "datatree";
		version = "0.0.14";
		pyproject = true;

		disabled = pythonOlder "3.9";

		src = fetchFromGitHub {
		owner = "xarray-contrib";
		repo = "datatree";
		rev = "refs/tags/v${version}";
		hash = "sha256-C6+WcHc2+sftJ5Yyh/9TTIHhAEwhAqSsSkaDwtq7J90=";
		};

		build-system = [
		check-manifest
		setuptools
		setuptools-scm
		];

		dependencies = [
		packaging
		xarray
		];

		nativeCheckInputs = [
		pytestCheckHook
		zarr
		];

		pythonImportsCheck = [ "datatree" ];

		disabledTests = [
		# output formatting issue, likely due to underlying library version difference:
		"test_diff_node_data"
		];

		meta = with lib; {
		description = "Tree-like hierarchical data structure for xarray";
		homepage = "https://xarray-datatree.readthedocs.io";
		changelog = "https://github.com/xarray-contrib/datatree/releases/tag/v${version}";
		license = licenses.asl20;
		maintainers = with maintainers; [ bcdarwin ];
		};
		}

+4 −0

Original line number	Diff line number	Diff line
		@@ -8017,6 +8017,8 @@ self: super: with self; {

		multiprocess = callPackage ../development/python-modules/multiprocess { };

		multiscale-spatial-image = callPackage ../development/python-modules/multiscale-spatial-image { };

		multiset = callPackage ../development/python-modules/multiset { };

		multitasking = callPackage ../development/python-modules/multitasking { };
		@@ -17434,6 +17436,8 @@ self: super: with self; {

		xarray-dataclasses = callPackage ../development/python-modules/xarray-dataclasses { };

		xarray-datatree = callPackage ../development/python-modules/xarray-datatree { };

		xarray-einstats = callPackage ../development/python-modules/xarray-einstats { };

		xattr = callPackage ../development/python-modules/xattr { };